Proposals for integration with the 7th Framework Programme The Second Call 2007 CALL 2A: FP7-KBBE-2007-2A KBE-2007-1-1-04: Development of technologies and tools for the exploitation of livestock genome MAS-BREEDING OF PIG RACES BY MEANS OF MOLECULAR-GENETIC MARKERS DETERMINING MEAT QUALITY Institute of Genetics and Cytology of the National Academy of Sciences of Belarus Phone: (37517) 2841917 Fax: (37517) 2841917 E-mail: M.Mikhailova@igc.bas-net.by Address: 27 Akademicheskaya St., Minsk 220072, Republic of Belarus Scientific adviser: Ph.D. M.E.Mikhailova Members of team: Research work: Tikhanovich N.I., Kamysh N.A., Volchok N.M. Ph.D. student E.V. Belaja Summary Exhibiting pleiotropic effect, allelic variants of H-FABP, PIT1 genes exert a great effect on a number of economic traits such as salted pork fat, content of intramuscular fat (defines meat quality), etc. The data, obtained as a result of screening proposed by us, will become the basis for pedigree work at some pig-breeding complexes in Belarus aimed at improving quality and increasing diversity of native meat produce, because owing to marker-associated selection will make it possible to purposefully conduct crossing of animals on an industrial scale providing either lean dietary meat or specialty, the so-called “marble” meat with a high fat content. Creation of pig DNA bank of different races will become a side result of the work that allows population and evolutionary-genetic investigations on a large scale aimed at intensification of the breeding process in native cattle-breeding and improvement of its efficiency to the level of developed European countries. Nevertheless, it is shown that all the studied polymorphism sites are associated in any case with factors defining productive quality of animals and value of meat. Therefore different allelic variants of H-FABP, PIT1 genes are considered reliable markers of meat quality for some pig races. Introduction At present screening of pig populations for the existence of different alleles of gene FABP was carried out practically in all west countries, Poland, Czech Republic and Russia. Studies for the existence of D-polymorphism which gives less stable and brilliant results were conducted in England, USA and some other countries. And finally screening for the presence of A-polymorphism was carried out only in some research centers specializing in study on H-FABP gene action (England and some others). A-type polymorphism occurs very seldom, effects of different alleles were insufficiently studied, therefore, in spite of the fact that in some communications difference in the content of intramuscular fat can reach 300% in carriers of different A-allelic variants of HFABP gene, polymorphism of the given type cannot be used yet as a breeding marker. Investigations of a similar scale for search for markers of quality and quantity of meat produce are proposed for the first time in our Republic. Nevertheless there is a certain work already done in the laboratory of animal genetics owing to the interest and financial support of some entities of agroindustrial complex in searching for markets for marker-associated breeding (MAS-breeding). For the present our laboratory has completed methods for studying H- and D-polymorphism of HFABP gone and created the collection of pig DNAS (more than 1000 samples) which will become the basis for DNA bank. The completed work allows supposition for fruitfulness of the investigations planned. PIT1 is a pituitary transcription factor for GH, prolactin and TSHß genes and also studied associations of PIT1 polymorphisms with carcass and performance traits. Main part Aim of the subproject: Full-scale screening of some pig races for molecular markers of meat quality. Objective: MAS-breeding of pig races, used in industrial crossing at farms of the Republic of Belarus by means of molecular-genetic markers determining meat quality. Work plan: Task 1. PCR/RFLP-screening of pigs of different races for H-FABP gene (d- and h-alleles). Relation of polymorphism of structural FABP gene to various parameters of meat quality. Task 2. Genetic screening of pig populations of different races for regulatory gene PIT1. Polymorphism of regulatory PIT1 gene. Task 3. Relation of allelic variants of H-FABP and PIT1 genes with meat quality values. Task 4. Recommendations for using preferable variants of FABP and PIT genes for MAS- breeding for improving meat quality. Deliverables 1. Comparative characteristic of genetic structure of pig populations will be given for allelic variants of FABP genes determining the content of intramuscular fat and PIT1 influencing an increase in animal weight. 2. Recommendations will be given for MAS-breeding for FABP and PIT1 genes. Main publications 1. Mosse I.B., Mikhailova M.E., Glushkova I.V., Kasinskaya S.I., Anoshenko I.P., Aksyutik T.V., Tikhanovich N.I., Kamysh N.A. Genetic monitoring of natural drosophila populations inhabiting radiocontaminated regions of Belarus // Radiatsionnaya biologia. Radioekologia. 2006, Vol.46, N.3, P.288-296. 2. Mikhailova M.E., Tikhanovich N.I., Kamysh N.A., Volchok N.M., Bezzubov V.I., Perashvili N.I., Ankudovich G.I., Dvornik V.A. Diagnostics of stress-sensitive pigs produced by different cross combinations for RYR1 gene // Zootechnical science of Belarus: Proc. Vol.40. Inst. of Cattle- Breeding of National Academy of Sciences of Belarus. Zhodino. 2005. P.93-97. 3. Kasinskaya S.I., Mikhailova M.E., Tikhanovich N.I. Combining effect of ionizing radiation and melanin on genetic structure of experimental drosophila populations carrying mutation ebony // Vesti NAN Belarusi. Ser.biol. nauk. 2004. N.2. P.66-69. 4. Mosse I.B., Kasinskaya S.I., Mikhailova M.E., Tikhanovich N.I. Genetic polymorphism sustension is the basis for biodiversity conservation // UNESCO Project “Development of Transboundary East European Model of the Regional Ecological Network “Polesie: Belarus – Ukraine – Poland” and Action Plan for Its Integration into the Pan-European Ecological Network” Strategies in Protection and Use of Water Resources and Biological Diversity in Polesie. International Seminar. Pinsk, Belarus, May 29-31, 2003. FINAL REPORT & PROCEEDINGS P.118-121. 5. Kasinskaya S.I., Mikhailova M.E., Tikhanovich N.I., Kamysh N.A. Variability of Adh, Gpdh ans Sod loci in natural drosophila populations inhabiting radiocontaminated regions of Belarus // Vesti NAN Belarusi. Ser. Boil. Nauk. 2002. N.4. P.32-36. 6. Kasinskaya S.I., Mikhailova M.E., Mosse I.B., Tikhanovich N.I. “Combined effect of ionizing radiation and melanin on genetic structure of experimental drosophila populations // Vesti NAN Belarusi. Ser. Boil. Nauk. N3. 2001. P.31-34. 7. Kasinskaya S.I., Mikhailova M.E., Mosse I.B. Genetic diversity of natural Drosophila melanogaster populations from different Belarus areas // Biodiversity and Dynamics of Ecosystem in North Eurasia. 21-26 August. Novosibirsk. Russia. Vol.3. Part 1. P.51-53.