Loading of cohesin and cohesion generation in response to DNA damage. Rutger.C.C. Hengeveld The sister chromatids are held together by the conserved cohesin complex from DNA replication in S phase until the metaphase to anaphase transition during mitosis. Generation of sister chromatid cohesion is essential for creating bipolar attachments between chromosomes and microtubules to allow equal segregation of sister chromatids in anaphase. In addition, the cohesin complex plays important roles in DNA damage checkpoint signaling and repair of DNA double strand breaks. In mammalian and yeast studies it was shown that the cohesin complex and its important loading factors are recruited to sites of DNA damage. Recent yeast studies indicate that not only local cohesion is generated at the damaged site. Remarkably, DNA damage triggers genome-wide cohesion establishment. However, it is still unknown if this is similar in mammalian cells. Phosphorylation of the cohesin complex components, SMC1 and SMC3, plays important roles in DNA damage induced checkpoint signalling in human cells. Several post-translational modifications mediate the different functions of the cohesin complex. Here, the role of the cohesin complex during DNA damage and its post-translational modifications are discussed, with a specific focus on the differences between yeast and human. The cohesin complex Scc3 is associated with the complex via From DNA replication in S phase until the Scc1 (Nasmyth and Haering 2005). The metaphase in cohesin complex is believed to hold the mitosis, chromatid pairs are held together by sisters chromatids together by co-entrapping the cohesin complex. The establishment of them inside its ring-shaped structure which cohesion in S phase and the removal in allows entrapment of the sister chromatids. to anaphase transition mitosis is mediated by accessory proteins and post-translational modifications of the Loading of the cohesin complex cohesin subunits. The core of the cohesin The conserved proteins Scc2 and Scc4 are and the similar condensin complexes are responsible for loading of cohesin during build of telophase in higher eukaryotes (Ciosk et al. are 2000, Tomonaga et al. 2000 and Bernard et conserved from yeast to human (Hirano et al. 2006). The mechanism by which Scc2 al. 2006). In eukaryotes, the SMC protein and Scc4 recruit cohesin to the DNA is family consists of six members, SMC1-6, largely unknown. However, the recruitment and are between 1000-1300 amino acids in of Scc2 and Scc4 to DNA appears to be length. All SMC proteins contain two large dependent on the pre-replication complex coiled coil domains between a central hinge (pre-Rc) in Xenopus egg extracts (Gillespie and a globular domain (Hirano et al. 2006) and Hirano et al. 2004 and Takahashi et al. (Fig. 1A). Because the protein folds back at 2004). The pre-RC forms by assembly of the the central hinge domain, the N and C origin of replication recognition complex terminal heads are in close proximity (ORC), Cdt1 and Cdc6 during the initiation creating domain step of DNA replication (Bell and Dutta et al. (Nasmyth and Haering 2005). The hinge 2002) (Fig. 1B). This complex in turn recruits domain also facilitates dimerization of SMC the Mcm2-7 helicase to the DNA in an molecules creating a V-shaped structure. inactive form. The activation of the Mcm2-7 Electron microscopy studies showed that helicase requires phosphorylation by the the SMC molecules are approximately 50 kinase Cdc7 and interaction with Cdc45 and nm in length and the hinge domain is Gins (Ilves et al. 2010). Importantly, Cdc7 extremely flexible (Haering et al. 2002 and kinase interacts with Scc2/Scc4 and its Gruber et al. 2003). Three different SMC kinase activity is required for efficient hetero-dimers recruitment of the complex to the DNA from Structural Chromosome (SMC) a (cohesin), functional are SMC2/4 Maintenance proteins ATPase formed: and SMC1/3 (condensin) and (Takahashi et al. 2008) (Fig. 1B). However SMC5/6. The cohesin complex consists of the SMC1, SMC3 and the non SMC proteins association of cohesin with chromatin in Scc1, Pds5, Sororin and Wapl yeast, indicating that in yeast cohesin is (Losada et al. 2000, Sumara et al. 2000, recruited to chromatin in a DNA-replication Haering et al. 2002 and Gruber et al. 2003). independent manner. Whether the pre-Rc is The N- and C-terminal domains of SMC1 required for cohesin loading in mammalian and SMC3 are coupled via Scc1 (Fig. 1A). cells is unclear. Scc3, pre-Rc is not essential for the Figure 1| Cohesin complex and cohesin loading. (a) The cohesin complex consisting of SMC1 (green), SMC3 (red), Scc1 (blue) and Scc3 (gray). The coiled coils and ATPase domains of SMC1 and SMC3 are highlighted. (b) In Xenopus egg extracts, the loading of Scc2 and Scc4 is dependent on the pre-replication complex and Cdc7 kinase activity. Establishment of cohesion in S phase to Pds5 through FGF sequence motifs and The recruitment of cohesin to DNA is interacts with Scc1 and Scc3. How SMC3 essential but not sufficient to entrap the acetylation exactly counteracts Scc3, Pds5 sister generation and Wapl activity is still unknown. One requires passage trough S phase and the model is that, at least in animal cells, action of establishment factors (Uhlmann acetylation of SMC3 recruits a cohesion and Nasmyth 1998). The expression of a maintenance factor, called sororin, which non-cleavable Scc1 after DNA replication also contains FGF sequence motifs. When does not hinder anaphase, indicating that sororin is recruited it displaces Wapl from its cohesion is not generated after S-phase binding (Haering et al. 2004). The conserved cohesion acetyltransferase, Eco1/Ctf7, is essential to (Nishiyama et al. 2010) (Fig. 2). However, establish sister chromatid cohesion. The thus human Eco1 Importantly, in human cells, depletion of both Wapl or Pds5 can rescue the phenotype of chromatids. genome orthologs, Cohesion encodes Esco1/Esco2, two and are to far Pds5 and generation no maintenance sororin is (Hou and Zou 2005). In yeast studies, two expression of a non-acetylatable SMC3 conserved lysines (K112 and K113) within mutant, the ATPase domain of SMC3 were identified mechanism is conserved from yeast to as major Eco1 targets in S phase (Rolef human (Gandi et al. 2006 and Terret et al. Ben-Shahar et al. 2008, Zhang et al. 2008, 2009). cohesion by counteracting a so far poorly understood ‘’anti-establishment activity’’ associated with Scc3, Pds5 and Wapl (Tanaka et al. 2001, Rowland et al. 2009 and Sutani et al. 2009) (Fig. 2). Wapl binds indication deficiency known. Esco1 This acetylation allows establishment of Esco2 of allows involved in the establishment of cohesion Unal et al. 2008 and Rowland et al. 2009). and yeast thereby that the or the regulatory Figure 2| Generation of cohesion during S phase. At S phase onset the cohesin complex is tightly bound to Pds5 and Wapl which antagonize cohesion establishment. When SMC3 is acetylated by Eco1, sororin is recruited and displaces Wapl from its binding to Pds5 and thereby allows cohesion generation or maintenance. Cohesin removal during mitosis pathway in human cells remains to be Cohesin is removed during mitosis by two established. One explanation could be that steps. The first, also called the prophase- the human chromosomes are larger than pathway, removes the bulk of cohesin from yeast chromosomes. During the metaphase chromosome arms. This removal depends to anaphase transition there is a lot of on the action of Wapl and Polo-like kinase-1 pulling force from the spindle poles to the (Plk-1), which is believed to phosphorylate chromosomes which potentially could break the cohesin subunit, Scc3 (Hauf et al. 2005, the chromosomal arms when they are still in Waizenegger et al. 2000 and Kueng et al. the cohesive state. 2006). How Wapl facilitates the removal of chromosomal arm cohesin is currently DNA damage response and checkpoint unknown. Cohesin is protected at the recovery centromeric regions by the activity of Bub1 The DNA is constantly exposed to external kinase which phosphorylates H2A and and internal factors which cause DNA thereby recruits proteins of the Shugoshin damage. The most common insults are family (Sgo1 and Sgo2) to the inner ionizing radiation, chemicals, and oxidative centromeric region (Kawashima et al. 2010). stress which create DNA double strand Sgo1 is thought to protect centromeric breaks. A functional DNA damage response cohesin by recruiting Protein Phosphatase stops the cell cycle progression until the 2A (PP2A) which may dephosphorylate damage is repaired. Scc3 (Hauf et al. 2005, Riedel et al. 2006 process to maintain genome stability and and Kitajima et al. 2006). The remaining thus Cohesin that persists at centromeric regions cancerous (Hoeijmakers et al. 2001 and is removed at the metaphase to anaphase Lobrich et al. 2007). When cells undergo transition by cleavage of Scc1 by the DNA damage, specialized ‘sensor’ proteins protease separase (Peters et al. 2006). detect the site of DNA damage and activate Importantly, in yeast, all cohesin remains on the DNA damage response pathway which the chromosomal arms until cleavage by results in a cell cycle arrest (Fernandez- separase. The function of the prophase- Capetillo et al. 2003). Then the damage can to protect This is an essential cells from becoming be repaired by non-homologous end-joining autophosphorylation (ATM is converted from (NHEJ) or by homologous recombination an (HR) (Ohnishi et al. 2009 and San Filippo et monomers), al. 2008). During NHEJ, the broken ends are complex acts upstream of ATM (Fig. 3A) directly re-ligated and often the double stand (Falck et al. 2005). The C-terminus of Nbs1 breaks are repaired accurately. However, interacts with the so called HEAT repeats of imprecise repair also frequently occur during ATM to mediate this recruitment (You et al. NHEJ due to the loss of nucleotides and 2005). Activated ATM first phosphorylates thus loss of genetic information. Therefore H2AX on a conserved serine residue (serine HR is performed during S and G2 phase, 139) using a homologous template from the sister phosphorylated: H2AX is called γH2AX), chromatid (San Filippo et al. 2008) Since the creating a docking site for the mediator of sister chromatids are identical this will DNA damage checkpoint 1 protein (MDC1) accurately genetic (Fig. 3A) (Stucki et al. 2005; 2006). Kinetic material. When cells are not able to repair studies showed indeed that first the MRN the damage properly the cells will die by the complex and MDC1 are accumulated at site induction of apoptosis. of DNA damage (Lukas et al. 2004). Other preserve the loss inactive at dimer into indicating the two that the C-terminus active MNR (when important factors like breast cancer type-1 Formation of a wide γH2AX region susceptibility protein (BRCA1) and 53BP1 The central kinases involved in the DNA (discussed damage response are the phosphoinositide suggesting that the recruitment of the MRN 3-kinase related kinases (PIKKs); ATM and complex and MDC1 is an early event in the ATR (Bartek and Lukas 2007 and Jackson DNA damage response. In addition, since and Bartek 2009). The substrates of these the recruitment of Nbs1, BRCA1 and 53BP1 kinases mediate cell cycle arrests in G1, S failed in cells lacking MDC1 it is proposed and G2, facilitate DNA repair and can that eventually induce apoptosis (Shiloh et al. platform to accumulate proteins involved in 2003, Bakkenist et al. 2004, Bartek et al. the DNA damage response (Lukas et al. 2004 and Lukas et al. 2004). The MRN 2004 and Bekker-Jensen et al. 2005). complex consisting of Mre11, Rad50 and Importantly, Nbs1 is the major sensor of DNA damage. region containing multiple conserved acidic This multifunctional complex is involved in motifs (SDT motifs) are phosphorylated by DNA telomere casein kinase 2 (CK2) on both serine and checkpoint threonine residues (Spycher et al. 2008, signaling (Petrini et al. 2003). In response to Melander et al. 2008 and Chapman et al. DNA damage the MRN complex recognizes 2008). This phosphorylation mediates the the free DNA ends of the DNA double strand protein-protein interaction between MDC1 breaks When and the N-terminal FHA domain of NBS1. positioned, the MRN complex recruits ATM This interaction is essential for accumulation which and retention of the MRN complex and ATM repair maintenance mechanisms, and (Stucki then cell-cycle et is al. 2006). activated by below) MDC1/γH2AX after are recruited interaction MDC1 later, forms recruitment a a at double strand breaks (Fig. 3A). This 53BP1 remains unknown. However, recently newly it recruited ATM phosphorylates was shown that the histone proximal H2AX molecules. Repetition of methyltransferase MMSET these events creates a positive feedback phosphorylated loop that leads to the formation of a wide phosphorylated form can directly bind to the γH2AX region around double strand breaks BRCT domain of MDC1. After its recruitment (Fig. 3A) (Stucki et al. 2006). MMSET methylates H4 on lysine 20, which by ATM is and its facilitates 53BP1 recruitment (Pei et al. Recruitment 53BP1 and the BRCA1 2011) (Fig. 3B). complex to sites of DNA damage The N-terminus of MDC1 is phosphorylated Checkpoint response by ATM on the so called TQXF motifs and The increased local concentration of ATM, serves as recruitment factor for RNF8 BRCA and 53BP1 allows phosphorylation of (Mailand et al. 2007) (Fig. 3A). RNF8 Chk2 on serine 68 by ATM (Matsuoka et al. contains a RING finger domain at the C- 2000). Chk2 is a protein kinase that triggers terminus which provides its E3 ubiquitin a cell cycle arrest after its activation (Fig. ligase activity and a FHA domain at the N- 3C). One of its major targets is p53 which is terminus the highly unstable in undamaged cells. p53 phosphorylated form of MDC1 (Fig. 3B) normally binds to the ubiquitin ligase MDM2, (Mailand et al. 2007, Kolas et al. 2007 and which targets p53 for destruction by the Huen et al. 2007). The ubiquitin cofactor proteasome (Momand 1992 et al., Oliner UBC13 binds to RNF8 and acts together to 1993 et al., Haupt 1997 et al., Honda 1997 ubiquitinate H2A and H2AX. However, et al. and Kubbutat et al. 1997). After RNF8 does not sustain the ubiquitylation of phosphorylation of p53, the binding affinity is the the reduced and p53 is stabilized. Stabilized H2A by UBC13/RNF8 p53 acts as a transcription factor and can creates a docking site for UBC13/RNF168 stimulate transcription of genes important in which specifically polyubiquitylates H2A and the checkpoint response. The major target γH2AX (Stewart et al. 2009 and Doil et al. gene is p21 that binds and inactivate 2009). These ubiquitin chains are in turn cyclin/CDK complexes to allow a cell cycle required for the recruitment of the BRCA1 arrest (Giono and et al. 2007). Chk2 also complex (consisting of BRCA1, RAP80, inhibits Abraxas and BRCC36) and 53BP1 which activates the Wee1 kinase which inhibits are important checkpoint proteins (Fig. 3B). Cdk activity directly (Sanchez et al. 1997, Two ubiquitin-interaction motifs on RAP80 Mailand et al. 2002 and Branzei and Foiani facilitate the accumulation of the BRCA1 et al. 2008) (Fig. 3E). which histones. It ubiquitylation of recognizes was shown that the Cdc25 phosphatase and complex to the site of DNA damage through interaction with polyubiquitinated H2A and Activation of Chk1 H2AX (Wang et al. 2007). How this After the resection of the double strand ubiquitylation regulates the recruitment of break which is dependent on CDK activity (Wohlbold and Fisher et al. 2009), the single sufficient stranded DNA is coated with replication recovery. Many proteins are phosphorylated protein A (RPA) which is required for the by ATM/ATR and therefore it was likely that recruitment of the ATR-ATRIP complex (Zou a phosphatase was involved in checkpoint et al. 2003) (Fig. 3C). Full ATR activation recovery. Indeed, a phosphatase, called requires TopBP1 binding which is recruited Wip1, was identified to dephosphorylate to RPA in an ATRIP dependent manner ATM and ATR targets including ATM/ATR, (Kumagai et al. 2006). Activated ATR Chk1/2 and p53 (Lu et al. 2008 and phosphorylates recruits Lindqvist et al. 2009). Wip1 also activates Claspin, which in turn is essential to activate MDM2 to target p53 for destruction by the the protein kinase Chk1 (Wang et al. 2006) proteasome (Zhang et al. 2009). Rad17, which (Fig. 3D). Chk1 and Chk2 share many of their substrates (Fig. 3E). Checkpoint recovery A critical function of the DNA damage checkpoint is to halt cell cycle progression until the damage is properly repaired. After the DNA is repaired, cells resume cell cycle progression, also called checkpoint recovery. When the DNA cannot be repaired cells go in senescence or die by apoptosis. A major player in DNA checkpoint recovery is Plk1 kinase, which is phosphorylated by Aurora A, complexed with Bora (Macurek et al. 2008) (Fig. 3F). This phosphorylation is required for its full activation. After its activation, Plk1 phosphorylates the inhibitors of CDC25; Claspin and Wee1 (Mamely et al. 2006, Watanabe et al. 2004, Mailand et al. 2006, Peschiaroli et al. 2006, van Vugt et al. 2010, Smits et al. 2002 and ToyoshimaMorimoto et al. 2002). These phosphorylations result in Claspin and Wee1 degradation, leading to reactivation of the CDC25 phosphatase. CDC25 can in turn activate CDK/Cyclin complexes to allow cell cycle progression. Plk1 also inhibits Chk2 and 53BP1 by direct phosphorylation (van Vugt et al. 2010). However, Plk1 is not to fully induce checkpoint Figure 3| Model for the DNA damage response and checkpoint recovery. (a) After a double strand break the MRN complex recognizes the free DNA end and recruits ATM to the site of DNA damage. ATM is activated by autophosphorylation and then first phosphorylates H2AX creating a docking site for MDC1. When MDC1 is recruited to the site of DNA damage it is phosphorylated by CK2 which mediates the protein-protein interaction between MDC1 and NBS1. This interaction leads to the accumulation of the MRN complex and thus ATM to the site of DNA damage. ATM is now able to phosphorylate proximal H2AX molecules and thereby creates a positive feedback loop to create a wide γH2AX region. (b) ATM phosphorylates MDC1 which serves a recruitment factor for the ubiquitin ligase RNF8. RNF8 together with its cofactor UBC13 act together to monoubiquitinate H2A and γH2AX. Once monoubiquinated it serves as a docking site for UBC13/RNF168 which in turn polyubiquitinate H2A and γH2AX. These ubiquitin chains facilitates the recruitment of the BRCA1 complex and 53BP1. ATM also phosphorylates the methyltransferase MMSET to facilitate its binding to MDC1. When positioned MMSET methylates Histone H4 which is important for 53BP1 recruitment. (c) The increased local concentration of ATM, the BRCA1 complex and 53BP1 allows activation of Chk2 by ATM dependent phosphorylation. Chk2 induces a cell cycle arrest though MDM2, p53, wee1 and CDC25 which eventually leads to the inhibition of CDK1/CyclinB. (d) Single stranded DNA is coated whit RPA which then recruit the ATR-ATRIP complex. ATR is activated by the action of TopBP1. (e) Once activated ATR phosphorylates Claspin, which in turn activates Chk1. Chk2 and Chk1 share their substrates to create a cell cycle arrest. (f) When the damage is properly repaired the cells resume cell cycle progression. Plk1 is activated by the Aurora A/Bora complex and acts together with Wip1 to allow cell cycle progression by targeting Claspin, Chk1, Chk2, Wee1 and MDM2. Cohesin is recruited to double-strand double strand breaks were induced by HO breaks and is required for DNA repair nuclease expression which was under Establishment of cohesion occurs during control of a galactose inducible promoter. DNA replication and is dependent on the Scc1 and SMC1 were used as markers for loading factors Scc2 and Scc4, and the the cohesin complex and their binding to establishment DNA factor Eco1. Intriguingly, was determined by chromatin these factors are also important for DNA immunoprecipitation (ChIP). The interacting repair in G2 (Sjogren and Nasmyth et al. chromosomal regions were analyzed by 2001). This raised the remarkable possibility PCR. that the novo cohesin loading and cohesion accumulated near the region of the DNA generation establishment can take place in double strand break (Strom et al. 2004). G2 in response to DNA damage. For the Importantly, quantifications of chromosome first evidence that sister chromatid cohesion III containing a HO recognition site showed is involved in DNA repair, chromosomes at least a 5-fold increase of Scc1 in ~100 kb from γ irradiated cells in G2 phase were around the site of double stand break (Unal separated by pulse-field gel electrophoresis el al. 2004). Surprisingly, a 2-fold reduction and amounts of full length chromosome 16 of Scc1 and SMC1 binding was observed in and its shorter (unrepaired) variants were regions of 2 kb proximal to the double strand detected by Southern blot (Sjogren and break, suggesting that either cohesin is not Nasmyth et al. 2001). Importantly, yeast loaded at the break itself or that cohesin has strains containing the temperature-sensitive moved away from the sites of DNA damage. alleles; Scc1, Scc2, Eco1, SMC1 and pds5 In the absence of Scc2 and Scc4, SMC1 is showed impaired DNA repair after switching not accumulated in the region of DNA temperature to 350C in G2 phase. This damage, indicating that Scc2 and Scc4 are interesting observation suggests that next to indeed required for loading of cohesin also the cohesin subunits also the known loading in response to DNA damage. Indeed, Scc1 and SMC1 are and establishment factors; Scc2, Eco1 and pds5 are required for efficient postreplicative Involvement of checkpoint proteins in double stand DNA repair. After this finding cohesin recruitment many studies were performed to find out It was clear that the cohesin complex is why this takes place and how this is recruited to sites of DNA damage. The regulated. straight forward question arises how this is exactly regulated. As describe above the Accumulation of cohesin subunits to sites of conserved loading factors are involved in DNA damage this recruitment. Interestingly, the important The first step was to find out if the cohesin checkpoint and repair proteins Tel1 (ATR), subunits are recruited to the site of damage. Mec1 (ATM), γH2AX and Mre11 are also Therefore, was required for efficient cohesin recruitment to generated with a HO recognition site and sites of DNA damage (Strom et al. 2004, yeast chromosome V Unal el al. 2004). Because the recruitment similar GAL-inducible promoter. Yeast stains of cohesin requires conserved components containing a temperature sensitive allele for of the DNA damage response, it is a Scc1 showed reestablishment of cohesion in possibility that the mechanism of cohesin G2/M phase after temperature switch to loading in response to DNA damage is 37.50C (loss of S phase cohesion), but only conserved. after induction of HO endonuclease together with the non temperature sensitive Scc1, Generation of cohesion during DNA indicating damage in yeast cells establishment can only occur in response to Generation of local cohesion in response to DNA damage. that postreplicative cohesion DNA damage Cohesion between two sister chromatids is Generation of genome wide cohesion in generated during DNA replication by the response to DNA damage action of conserved proteins. Since the Surprisingly, depletion of the cohesion establishment operators on chromosome I or chromosome factors Eco1 and Pds5 showed impaired IV while keeping the HO cleavage site on DNA repair in G2 (Sjogren and Nasmyth et chromosome III showed that cohesion is al. 2001), it was important to find out established whether de novo cohesion is generated in chromosomes. This indicates that genome- response to DNA damage. To study the wide cohesion is established in response to reestablishment chromatid DNA damage in yeast. Similar studies cohesion in response to DNA damage, showed that Mre11 and Mec1 (ATR) are elegant required for the generation of genome-wide of double cohesion sister strand unbroken temperature sensitive yeast strains ( Strom contrast, Tel1 (ATM) and γH2AX deficient et cells showed no abnormalities in genome- Chromosome and III Unal el al. wide sister chromatid cohesion (Unal et al. operators which can bind to Tet repressor- 2007 and Strom et al. 2007). Furthermore, a GFP fusion proteins to visualize sister different chromatids cohesion after DNA damage. temperature-sensitive Two GFP dots indicates cohesion loss, chromatid cohesion was generated in G2/M whereas one GFP dot indicates cohesion phase after treatment with γ-irradiation and between The induction of the non temperature sensitive formation of double strand breaks is induced SMC1. Strikingly, next to Mre11 and Mec1, by now Tel1 deficient cells and cells expressing expression sister of marked 2007). Tet the was performed on Tet cohesion after a double strand break. In 2007 were induced also using in al. assays break experiments by chromatids. site specific HO study showed that cells in SMC1 lines, sister endonuclease under control of an GAL- non-phosphorylateble H2A showed inducible promoter and HO cleavage sites increased sister separation compared to on chromosome III. Ectopic non temperature control cells when arrested in mitosis (Strom sensitive Scc1 was also under control of a et al. 2007). A possible explanation is that Mre11, Mec1, phosphorylation Tel1 are and stimulates cohesion generation (Heidinger-Pauli et al. 2008) (Fig. 4). Serine formation of local cohesion in response to 83 phosphorylation is not required for S DNA damage while Mre11 and Mec1 are in phase induced cohesion. This indicates that fact required for the formation of genome- the cohesion generation in response to DNA wide sister chromatid cohesion. How these damage somehow differs from S phase checkpoint induced unidentified proteins and for thereby the proteins essential H2A possibly Importantly, overexpression of Eco1 bypasses the defect formation of cohesion after a double stand imposed by the expression of the non- break is still unknown. In addition, Scc2 is phosphorylateble also essential for the formation of local and Scc1 phosphorylation by Chk1 promotes genome-wide cohesion, indicating that the Eco1 activity only in response to DNA formation cohesion damage (Unal et al. 2007; Heidinger-Pauli et formation requires the same loading factors al. 2009). In addition, the phospho-mimetic as in S phase. Overall, how the loading of mutant, Scc1S83D, suppressed the cohesion cohesin is regulated during DNA damage defect in cells expressing the less active and in S phase is very poorly understood. Eco1R222G/K223G mutant (Heidinger-Pauli et al. postreplicative to cohesion. the of contribute also Scc1, suggesting that 2009). Eco1 activity may be promoted in response to DNA damage Eco1 may acetylate Scc1 to promote The next question was if the establishment cohesion generation factor, Eco1, is also required for the After these findings it was likely that Eco1 establishment break activity is essential to generate cohesion in induced cohesion. The fist indication that response to DNA damage. The observation this that is of indeed double the strand case came from Scc1 phosphorylation promotes experiments in which overexpression of cohesion generation after DNA damage Eco1 generates cohesion in G2/M cells in raised the possibility that Scc1 is acetylated the absence of a double strand break. This in response to DNA damage. Using multiple strongly suggests that Eco1 activity is sequence alignments two candidate lysines, limiting in undamaged cells and becomes K84/K210, were identified (Fig. 5 B/C). more active in response to DNA damage to These were attractive candidates because facilitate the generation of cohesion. Since K84 was immediately adjacent to S83 and Mec1 is required for the generation of DNA both shared similarities in proximal amino damage a acids compared to the lysines on SMC3 activity which are also Eco1 targets in S phase. In possibility induced that cohesion, Mec1 it kinase was regulates Eco1 acetyltransferase activity. addition, K210 had previously been Importantly, it was shown that Chk1, which described as an Eco1 target, but at the time is a downstream target of Mec1, can no phenotype was observed upon mutation phosphorylate serine 83 of Scc1 and of this lysine. Importantly, substitutions of these lysines to arginines in Scc1 do not inhibitor protein Wapl (Fig. 4A). Since lysine affect the generation of S phase cohesion. 83 residue of Scc1 is in close proximity to K210R the acetylation sites of SMC3, it was likely mutants showed a partial defect in DNA that also the acetylation of lysine 83 damage induced cohesion and when both promotes cohesion generation in response residues are mutated, cohesion generation to DNA damage by antagonizing Wapl. is Indeed, Wapl depleted cells allow cohesion However, the single Scc1 completely K84R abolished. and Scc1 Interestingly, cohesin containing the Scc1K84R/K210R mutant generation is still enriched around the site of a double absence of a DNA double strand break, strand break, indicating that cohesin is indicating that Wapl also is an inhibitor of recruited to the site of DNA damage but cohesion generation in G2/M phase. In cannot addition, covert into a cohesive state in either cells the presence expressing the or non- (Heidinger-Pauli et al. 2009). The same acetylatable Scc1 mutant which normally phenotype cells blocked cohesion generation during G2/M containing the Scc1S83A allele or Eco1 can establish cohesion in the absence of deficient cells. Moreover, cells expressing Wapl (Fig 4C). This suggests that Eco1 the acetyl-mimics of Scc1-K84 and Scc1- dependent acetylation promotes cohesion K210 can generate cohesion in G2/M in the generation in response to DNA damage by absence antagonizing is of also observed Eco1 activity or in in cells Wapl. Importantly, Scc1 expressing the Scc1S83A mutant (Heidinger- phosphorylation Pauli et al. 2009). Furthermore, cohesion acetylation on lysine 84 and 210 is not generation in response to DNA damage is required for the generation of S phase blocked the cohesion. In addition, lysine 112 and 113 of Scc1S83D/K84R/K210R mutants. All these data SMC3 which are essential for cohesion strongly mediated generation during S- phase are not required phosphorylation of Scc1 on serine 83 in response to DNA damage. Also the enhances Eco1 mediated acetylation of acetyl- mimetic mutant of SMC3 cannot Scc1 on lysine 84 and lysine 210. However, bypass the need for DNA damage for till now there is no biochemical evidence cohesion that these residues are actually acetylated in indicating that SMC3 acetylation cannot vivo. Mass spectrometry analysis can be antagonize Wapl in G2/M phase (Fig. 4). in cells suggests that expressing Chk1 performed to test the existence of this acetylation. Scc1 acetylation may promote cohesion generation in response to DNA damage by antagonizing Wapl In S phase, SMC3 is acetylated by Eco1 and thereby antagonizes the cohesion on generation serine in 83 G2/M and phase, Figure 4| Generation of cohesion during DNA damage. (a) During S-phase SMC3 (red) is acetylated by EcoI, which antagonizes Wapl to allow cohesion generation or maintenance. (b) In response to DNA damage a wide γH2AX region around the DNA double strand break is formed and the cohesin complex is recruited via Scc2 and Scc4 by a still unidentified mechanism (indicated by arrowheads). Cohesion generation is inhibited by Wapl activity. (c) Mec1 (ATR) activates Chk1, which in turn phosphorylates Scc1 presumably to recruit Eco1 to the site of DNA damage. Eco1 may acetylate Scc1 to promote cohesion generation by antagonizing Wapl. Post-translational of not (Fig. 5A/B/C). This suggests that the cohesin subunits in response to DNA establishment of cohesion in response to damage in human cells DNA damage may differ between these two Generation of cohesion is apparently not species. strictly limited to S phase, but can also quantitative reestablish in G2 in response to DNA spectrometry analysis showed that SMC3 damage. acetylation acetylation at lysine 105 and lysine 106 is antagonizes Wapl during DNA replication in induced in response to DNA damage in S phase and in response to DNA damage human cells (Beom-Jun et al. 2010). This by targeting SMC3 or Scc1 respectively in acetylation is dependent on ESCO1 and on yeast cells. While the acetylation sites on ATM/ATR SMC3 are conserved between yeast and phospho-proteomic human, ESCO1 Eco1 modifications dependent remarkably the putative Scc1 acetylation and phosphorylation sites are Indeed, recent studies SILAC-based kinase as a activity. mass Recently, screen novel using ATM a identified substrate, suggesting that ESCO1 may be under control of ATM kinase activity (Matsuoka et al. 2007). However, ESCO1 could also be an indirect target of ATM, because the phospho-proteomic screen was performed using ATM inhibitors. How and whether ESCO1 is recruited to the site of DNA damage and how it is further regulated remains unknown. Interestingly, using ChIP-sequencing it was shown that postreplicative binding of SMC1 and SMC3 was not limited to the DNA damaged sites but was observed genomewide on pre-existing cohesin binding sites. In addition, when serine 1083 of SMC3 (a known ATM site, discussed later) is substituted to alanine, cohesin binding is impaired. How these post translational modifications enhance cohesin binding to chromatin is unclear. Because these modifications are in close proximity to the ATPase domain it is a possibility that these modifications regulate SMC3 ATPase activity. A second likely possibility is that these modifications modulate the antiestablishment factor Wapl as in S phase. Figure 5| Comparison of phosphorylated and acetylated regions of SMC3 and Scc1 between yeast and human. (a) Eco1 dependent acetylation An important note is that the generation of sites on SMC3. (b) Chk1 dependent phosphorylation cohesion in response to DNA damage was and Eco1 dependent acetylation site on Scc1. (c) Eco1 thus far not been shown in human cells. In dependent acetylation site on Scc1. conclusion different post translational modifications appear to regulate the loading of the cohesin complex and generation of cohesion in response to DNA damage. Remarkably these modified residues are not all conserved between yeast and human. SMC1 is a target for ATM in response to 343 to activate the S phase checkpoint. DNA damage in human cells Importantly, in cells expressing NBS1 in As mentioned earlier, ATM is the major which serine 278 and 343 are mutated to kinase that regulates cell cycle checkpoints, alanines, the phosphorylation of SMC1 on DNA serine repair and recombination. This 957 was abolished and suggests the possibility that also the cohesin phosphorylation of serine 966 was reduced subunits are under the control of this master (Yazi et al. 2002). This suggest that the regulator in response to DNA damage. phosphorylation of NBS1 acts upstream of Indeed, in human cells, SMC1 was found to SMC1 be phosphorylated in vivo and in vitro in an mechanism ATM Mass (discussed later). BRCA1 mutants who can spectrometry analysis identified that both not be phosphorylated by ATM do not affect serine SMC1 dependent 957 and manner. 966 of SMC1 are phosphorylation. remains to The be phosphorylation. exact established However, Co- phosphorylated by ATM in vivo upon immunoprecipitation experiments showed ionizing that irradiation (Kim et al. 2002). SMC1 can interact with BRCA1, However, in ATM deficient cells these indicating that SMC1 and BRCA1 may form residues were still phosphorylated after a complex in response to DNA damage exposure to ultraviolet light or when DNA (Yazi et al. 2002). The function of this replication is inhibited by hydroxyurea. This complex and whether or not this complex is indicates that an additional kinase(s) can DNA phosphorylate SMC1 in response to DNA unknown. damage-regulated is currently damage or a blockade of replication. Indeed, it was described that that SMC1 is SMC1 phosphorylation is important to phosphorylated by ATR in ATM deficient cell maintain the S phase and the G2/M lines checkpoint in response to DNA damage (Tomimatsu et al. 2009). It became evident that SMC1 phosphorylation is involved in the S phase SMC1 phosphorylation of serine 957 and checkpoint since the non- phosphorylateble 966 are NBS1 and BRCA1 dependent SMC1 Many proteins and protein complexes are increased DNA synthesis in response to involved in the DNA damage response. DNA damage, compared to wild type SMC1 Early studies showed that phosphorylation expressing cells (Yazi et al. 2002). In of serines 957 and 966 were abolished in addition, cells lacking NBS1 or BRCA1, indicating metaphase that these phosphorylation events are NBS1 increase of chromosomal aberrations in and BRCA1 dependent (Kim et al. 2002; cells expressing SMC1S957A/S966A, suggesting Yazi et al. 2002). NBS1 is part of the MRN that these phosphorylations are important (MRE11/RAD50/NBS1) is for either sensing the DNA damage , or for phosphorylated by ATM on serine 278 and maintaining the G2/M checkpoint (Kitagawa complex and mutant (SMC1S957A/S966A) chromosome arrested cells showed spreads showed of an et al. 2004). these (Tomimatsu et al. 2009). How SMC1 is phosphorylations are also important for DNA phosphorylated in response to hypoxia was repair is unknown. Interestingly, antibodies unclear. In cells treated with the hypoxia- detecting co- mimetic treatment, Desferrioxamine (DFO), NBS1, SMC1 is phosphorylated at serine 966 in an 53BP1, CHK2 and BRCA1 foci after ionizing ATM independent manner. Importantly, in irradiation, is ATR deficient cells, the levels of SMC1, phosphorylated at the site of DNA damage. Chk1 and NBS1 phosphorylation greatly Importantly, cells expressing SMC1S957A/S966A decreases, indicating that these proteins are showed no aberration in localization of these phosphorylated by ATR. However, these ATM substrates, SMC1 phosphorylations could also be indirect. In phosphorylation events is not involved in addition, DNA-PKcs deficient cells showed recruiting these ATM substrates (Kitagawa no abnormalities in phosphorylation of these et al. 2004). However, probably other proteins. Importantly, Chk2 phosphorylation regions of SMC1 or other cohesin subuntis was not affected in ATR deficient cells, but are involved in the recruitment of important was reduced in cells lacking DNA-PKcs. checkpoint proteins to the site of DNA This suggests that two different pathways damage (discussed later). are activated in response to DFO. First, pS957 localization with Whether SMC1 ATM, suggesting showed γH2AX, that SMC1 indicating that SMC1, NBS and Chk1 are phosphorylated The role of SMC1 in hypoxia induced in an ATR dependent manner, whereas apoptosis Chk2 DNA damage signaling pathways are also dependent. In addition, ATR deficient cells initiated in response to hypoxia, including show phosphorylation of SMC1 on serine 966. exposure Hypoxia is mainly observed in solid tumors expressing SMC1 in which serine 966 was due the reduced availability of oxygen mutated to alanine also show a reduction of supply. The lack of oxygen can induce apoptosis after exposure of DFO. This aberrant DNA repair which will lead to suggest that ATR mediated phosphorylation genetic of SMC1 is responsible for this phenotype. instability. Hypoxia induced activation of ATM and ATR is independent of the MRN complex (Bencokova et al. 2009). As describe phosphorylated in an above, ATM SMC1 is dependent manner in response to ionizing radiation, but ATM is dispensable after treatment with hydroxyurea or UV irradiation. Recently it was found that in ATM deficient cells SMC1, p53, Chk1, Chk2 and 53BP1 are phosphorylated in a ATR dependent manner phosphorylation a reduction to DFO. of is DNA-PKcs apoptosis after Importantly, cells The role of cohesin in the DNA damage damage induced checkpoint signaling. In induced G1/S and G2/M checkpoint in addition, when the checkpoint was switched human cells off after one hour of induction of DNA Besides the role in DNA repair, cohesin is damage, control cells showed less broken also involved in the DNA damage induced chromosomes than the sororin depleted checkpoint activation. As describe above, cells, indicating that indeed also in human SMC1 is phosphorylated on serine 957 and cells, cohesion is essential for efficient DNA 966 in an ATM dependent manner upon γ- repair. However, this finding needs to be irradiation. phosphorylation confirmed by measuring checkpoint activity, accumulates at irradiation induced foci in the for instance by determination of p21 levels nucleus in G2 cells lacking Scc1 or sororin. SMC1 and cells expressing non- phosphorylateble mutants shows defect in the intra-S phase and the G2/M checkpoint The cohesin complex regulates Chk2 kinase checkpoint (Yazi et al. 2002 and Kitagawa et activity al. 2004). Likewise, residues of SMC3 Interestingly, semi-quantitative immunoblot (serine 1067 and 1083) are phosphorylated and immunofluorescence analysis showed by that ATM and expression non- the phosphorylation of Chk2 on phosphorylateble mutants also affects the threonine 68, which is essential for its intra-S phase checkpoint. activation, is reduced in Scc1 and SMC3 In human cells sororin is required for depleted cells. Remarkably, the DNA repair in G2 phase (Schmitz et al. phosphorylation of ATM, Chk1 and γH2AX 2007). In sororin depleted cells, cohesin can was increased in Scc1 and SMC3 depleted associate with chromatin, but is unable to cells during and before DNA damage. A generate possible explanation or maintain sister chromatid could be that in cohesion. The role of cohesin in the G2/M cohesin deficient cells, DNA double strand checkpoint became evident when double breaks accumulate due to defects in DNA strand breaks were induced in Hela cells by repair. Importantly, sororin is not required for γ-irradiation or treatment with etoposide in Chk2 activation, suggesting that cohesin G2 phase. To determine the activity of the and not its ability to mediate cohesion is G2/M checkpoint, chromosomal spreads of essential for Chk2 activation. In addition, mitotic chromosomes were analyzed for cohesin is also required to active Chk2 in broken chromosomes (Watrin et al. 2009). G1 phase, again indicating that this process In these experiments, Scc1 and SMC3 is independent of the generation of sister depleted cells overrides the G2/M DNA chromatid cohesion. damage checkpoint and enters mitosis with broken chromosomes. Importantly, sororin is The cohesin complex recruits important not required for the G2/M checkpoint, checkpoint proteins to sites of DNA damage indicating that cohesin and not its ability to After irradiation, several proteins which are generate cohesion is essential in DNA involved in the DNA damage response are recruited to the site of DNA damage. contributed to the formation of cohesion is Immunofluoresce experiments showed that currently Scc1 and sororin are not involved in the recruitment enrichment of Mre11, Nbs1, MDC1, γH2AX cohesion in G2/M phase are dependent on and ATM-S1981P to the site of DNA the conserved loading factors Scc2 and damage. However, MDC1 and γH2AX are Scc4. How these factors recruit cohesin to more diffuse over the chromatin in Scc1 chromatin remains to be investigated, both depleted in S phase and in response to DNA cells. In contrast, proper localization of the mediator protein 53BP1 is unclear. and Intriguingly, the the establishment of damage. strongly dependent on Scc1 but not on sororin. Since 53BP1 is known to be Yeast required for Chk2 phosphorylation, it is phosphorylation by Chk1 promotes Eco1 possible dependent that cohesin mediates Chk2 studies argue acetylation that and Scc1 thereby activation by promoting the recruitment of antagonizes the cohesion inhibitor Wapl. 53BP1 to the sites of DNA damage. It is an However, the serine and lysine residues in interesting possibility that cohesin is a Scc1 are not conserved between yeast and crucial recruitment factor for more essential humans, indicating that in this respect the checkpoint is establishment of DNA damage induced important to look for interaction partners of cohesion may differ between these species. the cohesin subunits specifically in response Importantly, human studies showed that to Immunoprecipitation lysine 105 and lysine 106 of SMC3 are experiments in combination with mass acetylated not only at the site of DNA spectrometry analysis could help to identify damage but also in a genome wide fashion. such interaction partners. These proteins. DNA Therefore, damage. it acetylations are dependent on ESCO1 and on ATM/ATR. Whether or not Concluding remarks and future perspectives Above, the this contributes to the establishment of DNA damage induced cohesion is unknown. role the Since important checkpoint proteins are generation of cohesion in response to DNA involved in the loading of cohesin and damage studies generation of cohesion in response to DNA became clear that cohesin subunits are damage it is possible that cohesin loading enriched around the site of DNA damage and cohesion generation may differ from S and are able to transform into the cohesive phase. Interestingly, phospho proteomics state. wide revealed ESCO1 as a potential target for cohesion is established. To allow cohesion ATM, raising the possibility that ESCO1 establishment after DNA replication, the activity is under control of ATM kinase important checkpoint proteins Tel1 (ATM), activity. Mec1 ESCO1 phosphorylation increases its local are of described. Importantly, (ATR), required. How cohesin Yeast also Chk1 these and genome and MRE11 proteins are exactly One possibility could be that recruitment to the chromatin in response to expressing the non phosphorylateble mutant DNA damage. of NBS1. BRCA1 phosphorylation does not affect the phosphorylation co of SMC1. Thus, in yeast and possibly in mammalian However, cells local and genome wide cohesion is experiment showed that BRCA1 interacts to generated. However, the actual function of SMC1. Which domains are involved and the the generation of cohesion in response to function DNA damage is still under debate. A straight unknown. of immunoprecipitation this complex is currently forward model for local cohesion is to bring the DNA strands in close proximity to allow SMC1 phosphorylation is involved in the S proper DNA repair. But why does DNA phase damage trigger genome wide cohesion Importantly, establishment? One explanation is to inhibit localized at the sites of DNA damage. gene transcription to avoid unregulated However, these phosphorylation events do signaling important not affect the localization of the checkpoint regulatory proteins are mutated due DNA proteins NBS1, 53BP1, CHK2 and BRCA1. damage. In contrast, 53BP1 localization is dependent pathways when and the G2/M checkpoint. phosphorylated SMC1 is on the cohesin complex, indicating that In human cells it is shown that SMC1 is other regions on SMC1 or other subunits of phosphorylated on serine 957 and 966 by the complex are involved in the recruitment ATM in response to DNA damage or ATR of 53BP1 and possibly more important after treatment with a hypoxia-mimetic checkpoint treatment. these phosphorylation on serine 68 is reduced in phosphorylation events were abolished in Scc1 and SMC3 depleted cells. 53BP1 is the absence of NSB1 or BRCA1, suggesting required for that SMC1 phosphorylation is downstream interesting possibility could be that the of these checkpoint proteins. Further studies cohesin showed that NBS1 phosphorylation by ATM recruitment promotes SMC1 phosphorylation. The exact phosphorylation. In addition, a more diffuse regulatory mechanism remains unclear. A localization possible explanation could be that NBS1 observed in cells lacking Scc1. Interestingly, phosphorylation cohesin in an artificial situation in which the cohesin complex to allow local phosphorylation of complex cannot transfer into its cohesive SMC1. is state, 53BP1 does localize properly. So far, phosphorylated in an ATM/ATR dependent it is unknown how the cohesin complex manner to regulate the S phase checkpoint recruits 53BP1 or other novel important after irradiation. Until now no studies were checkpoint performed on the localization of SMC1 or immunoprecipitation and proteomics studies SMC3 in cells lacking NBS1 or cells need In Importantly, recruits addition, the also SMC3 to proteins. Interestingly, Chk2 Chk2 phosphorylation. complex and of facilitates thereby MDC1 proteins. be performed 53BP1 allows and Chk2 γH2AX Large to An allow is scale the identification of potential interaction partners This could then lead to the removal of of the cohesin complex and eventually its cohesin in a similar manner as during the post-translational modifications in response prophase-pathway. to DNA damage. This method also has the potential to identify unknown proteins that The crucial residues and their post are important for the recruitment of the translational modifications that are important cohesin complex to chromatin. for generation of cohesion in yeast are not all conserved in mammalian cells. 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