1 Supporting Materials and Methods CD11b+ Gr1+ Bone Marrow Cells Ameliorate Liver Fibrosis by Producing Interleukin-10 in Mice Yang-Gun Suh,1 Ja Kyung Kim,2 Jin-Seok Byun,1 Hyon-Seung Yi,1 Young-Sun Lee,1 Hyuk Soo Eun,1 So Yeon Kim,1 Kwang-Hyub Han,2 Kwan Sik Lee,2 Gregg Deuster,3 Scott L. Friedman,4 and Won-Il Jeong1 Materials. Carbon tetrachloride (CCl4), OptiPrep and type I Collagenase were purchased from Sigma-Aldrich (St. Louis, MO). Percoll gradient and DNase I were obtained from GE Healthcare (Buckinghamshire, UK) and Roche (Indianapolis, IN), respectively. Human hepatic stellate cell lines (LX-2 and hTERT) were friendly obtained from Dr. Friedman (Mount Sinai School of Medicine, NY, USA) and Dr. Brenner (UC San Diego, CA, USA) respectively. Serum chemistry. Serum alanine aminotransferase (ALT), aspartate aminotransferase (AST), total cholesterol, triglyceride, and albumin were measured using VetTest Chemistry analyzer (IDEXX Lab., Westbrook, ME) according to manufacturer’s instruction. Mouse BMC preparation and Isolation of liver MNC. For transfer of BMC, 6-weekold mice were sacrificed by CO2 inhalation, and bones of tibias and fibulas were removed. The BMC were flushed from the medullary cavities of the excised bones, and suspended in RPMI-1640 containing 10% FBS. For isolation of liver MNCs, livers were removed and minced into small pieces, which were shaken in the digestion buffer (0.075 % collagenase type I in HBSS with 0.02% DNase I) at 37°C for 20 min, homogenized and filtered through a 70-μm cell strainer. For elimination of hepatocytes, the cell suspension was centrifuged at 400 rpm for 5 min at room temperature, and then supernatant was collected, washed in PBS and resuspended in a 40% Percoll gradient. The cell suspension was gently overlaid onto 70% Percoll and 2 centrifuged at 2,400 rpm for 30 min. Liver MNCs were collected from the interface. Co-culturing experiments of activated HSCs and BMC. For isolation of HSCs,1 mouse livers were perfused in situ first with EGTA solution (5.4 mM KCl, 0.44 mM KH2PO4, 140 mM NaCl, 0.34 mM Na2HPO4, 0.5 mM EGTA, 25 mM Tricine, pH 7.2), followed by the perfusion buffer and the digestion buffer (0.009% collagenase type I in HBSS with 0.02% DNase I) at 37°C for 20-30 min. The cell suspension was filtered through a 70-m cell strainer and centrifuged at 400 rpm for 5 min at room temperature to remove hepatocytes. The supernatant was washed, resuspended in HBSS, loaded on 11.5% OptiPrep and centrifuged at 1400 g for 15 min at 4°C. HSCs were collected from interfaces and cultured in RPMI-1640 with 10% FBS and 10% horse serum on plastic plates for 4 days to activate themselves spontaneously (D4 HSCs). For co-culturing experiments, D4 HSCs were fasted in RPMI-1640 with 1% FBS for 6 hours and then co-cultured with BMC for 6, 12 or 24 hours. For experiments of human samples, human hepatic stellate cell lines, LX-2 and hTERT were maintained in DMEM with 10% FBS. After fasting in RPMI-1640 with 1% FBS for 6 hours, LX-2 or hTERT cells were co-cultured with human BMC for 6, 12 or 24 hours. Human BMC preparation and Procedure of BMC infusion. Human BMC were isolated as described previously.2 Bone marrow (500-750 mL) was harvested from both iliac bones as standard procedures under general anesthesia and was collected in a plastic bag containing heparin.3 After removal of fat and bony particles by filtration, MNCs of bone marrow were isolated using the automatic cell washer 2991 (Gambro, Lakewood, CO). The final concentrated cells were made up to a final volume of about 100 mL. Five-mL of the final cell product were subjected to trypan blue dye exclusion test, bacterial culture, and cell counting. At 4-8 hours after the bone marrow harvest, the final bone marrow MNC preparation was administered via peripheral vein over an hour. BMC infusion is described in Supporting Fig.4E, F. Fluorescence-activated cell sorting (FACS). Isolated liver MNCs or BMC were stained with anti-CD45 (30-F11), anti-F4/80 (BM8), anti-FoxP3 (FJK-16s) (eBioscience, San Diego, CA), anti-CD45.1 (A20), anti-CD11b (M1/70), anti-CD3e 3 (145-2C11), anti-NK1.1 (PK138), anti-CD4 (RM4-5), anti-Gr1 (RB6-8C5), anti-Ly6C (AL-21), and anti-Ly6G (1A8) (BD bioscience, San Jose, CA). For blocking nonspecific antibody reactions, cells were pre-incubated with anti-mouse CD16/32 mouse Fc blocker (BD bioscience) before the staining with antibodies. The stained cells were analyzed using BD™ LSR II Flow Cytometer (BD bioscience) and FlowJo software (Tree Star, Ashland, OR). For intracellular staining, PE conjugated anti-IL-10 antibody (BD) was used. In vitro experiment, GolgiStop protein transport inhibitor (BD) containing monensin was treated to BMC after 6 hours of co-culturing with D4 HSCs as manufacturer’s instruction, and then the BMC were further cultured for 6 hours. The cultured BMC were permeabilized with Cytofix/Cytosperm solution (BD), stained with PE conjugated anti-mouse IL-10, and subjected to FACS analysis. For ex vivo experiment, freshly isolated BMC from each mouse were restimulated with 1 ml of 25 ng/ml PMA, 500 ng/ml ionomycin, and GolgiStop for 6 hours, and then subjected to FACS analysis by same methods with in vitro experiments. The sorting of BMC was performed using FACSAria™ II Cell Sorter (BD bioscience) depending on their marker expression. Staining. Five-μm sections of paraffin embedded tissue blocks were stained with 0.1% Sirius Red (Sigma-Aldrich) to examine collagen deposition. For measuring of collagen deposition, 9 areas of each section were taken and analyzed using an Olympus BX51 microscope equipped with a CCD camera (Tokyo, Japan) and computer-assisted image analysis with DP2-BSW (Olympus). Immunohistochemistry and immunofluorescence staining were performed with anti-α-SMA antibody (Dako, Glostrup, Denmark) and anti-F4/80 antibody (Novus Biologicals, Cambridge, UK). The antigen-antibody complexes were visualized with avidin-biotin peroxidase complex solution using an ABC kit (Vector Laboratories, Burlingame, CA) and DAB (Invitrogen, Eugene, OR) or visualized with Alexa Fluor®594 conjugated anti-mouse IgG or anti-rat IgG secondary antibody (Invitrogen) and VECTASHELD Mounting Medium with DAPI (Vector Laboratories) as manufacturer’s instructions. For staining intracellular IL-10 in the BMC, the BMC co-cultured with D4 HSCs for 12 hours with GolgiStop and then the BMC were attached to slide glasses by cytospin with 500 rpm for 5 minutes, fixed with 4% paraformaldehyde, permeabilized with 0.2% triton-X (Sigma-aldrich), then stained with anti-mouse/rat IL-10 antibody (R&D Systems, Minneapolis, MN), and visualized with ABC kit and DAB. Giemsa staining (Merck, 4 Damstadt, Germany) was performed in the BMC co-cultured with D4 HSCs or in the BMC expressing IL-10 and CD45.1. Immunoblot. Proteins from cells and tissues were extracted with RIPA buffer (30 mmol/L Tris, pH 7.5, 150 mmol/L sodium chloride, 1 mmol/L phenylmethylsulfonyl fluoride, 1 mmol/L sodium orthovanadate, 1% Nonidet P-40, 10% glycerol, and phosphatase and protease inhibitors) after homogenization of tissues. Western blot analyses were performed with 50-80 μg proteins from liver homogenates using anti-αSMA and anti-β-actin antibodies (Sigma-Aldrich). Proteins were separated by electrophoresis through 7.5-12.5% SDS-polyacrylamide gels and then transferred to nitrocellulose membranes using ECL system (GE healthcare). Quantitative RT-PCR. Total RNA from purified cells was extracted using Trizol (Invitrogen). Extracted 1ug of RNA was reverse-transcribed using the SuperScript® II reverse transcriptase (Invitrogen) and oligo(dT) primer to make cDNA. Synthesized cDNA and gene specific primers (Supporting Table 2) were used for PCR using amfiSure PCR master mix kit (GenDepot, Barker, TX). Quantitative RT-PCR was performed with the CFX96 system (Bio-Rad, Hercules, CA) and the SYBR Green supermix kit (Bio-Rad). Expression of specific genes was normalized and expressed as a fold-change relative to housekeeping genes (-actin or GAPDH). 5 Supporting Table 1. Clinical characteristics of enrolled patients for autologous bone marrow infusion. Effective patients Non-effective All patients (n = 10) patients (n = 5) (n = 15) 4:6 3:2 7:8 56 (6.6) 49 (5.8) 53 (7.0) Hepatitis B virus 10 4 14 Alcohol 0 1 1 Child-Pugh score* 7.2 (0.4) 8.0 (0.7) 7.5 (0.7) Albumin*, g/dL 2.9 (0.4) 2.9 (0.6) 2.9 (0.5) Sex (M:F) Age, * years Cause of liver cirrhosis *Values are expressed as the mean (standard deviation). 6 Supporting Table 2. Primer sequences Name Forward primer Reverse primer Mouse IL-10 GCTCTTACTGACTGGCATGA CGCAGCTCTAGGAGCATGTG Mouse IL-6 TCCATCCAGTTGCCTTCTTG TTCCAC GATTTCCCAGAGAAC Mouse MCP-1 AGGTCCCTGTCATGCTTCTG TCTGGACCCATTCCTTCTTG Mouse FoxP3 GGCCCTTCTCCAGGACAGA GCTGATCATGGCTGGGTTGT Mouse ColIa1 CTGCTGGCAAAGATGGAGA ACCAGGAAGACCCTGGAATC Mouse α-SMA CTGACAGAGGCACCACTGAA GAAGGAATAGCCACGCTCAG Mouse β-actin AGAGGGAAATCGTGCGTGAC CAATAGTGATGACCTGGCCGT Mouse MMP-9 GTGTTCCCGTTCATCTTTGAGG GAAACCCCACTTCTTGTCAGTG Mouse MMP-13 TGTTTGCAGAGCACTACTTGAA CAGTCACCTCTAAGCCAAAGAAA Human IL-10 GAGATGCCTTCAGCAGAGTGAAGA AGGCTTGGCAACCCAGGTAAC Human GAPDH CCACTCCTCCACCTTTGAC ACCCTGTTGCTGTAGCCA 7 Supporting Figure Legends Supporting Fig. 1. Infusion of BMCs ameliorates CCl4-induced liver fibrosis in mice. Mice were injected with CCl4 three times a week for 2 weeks and then isolated whole bone marrow cells (BMCs) of GFP+ mice were infused through tail vein. Mice were sacrificed at 12 or 24 hours after infusion of BMCs. (A) Serum chemistry was conducted for AST, triglyceride, cholesterol and glucose. (B) Stained area with Sirius red and α-SMA were analyzed. (C) Isolated HSCs from mice livers were subjected to RT-PCR analyses. (D) After staining with α-SMA antibody, frozen liver sections were observed under the fluorescent microscopy (original magnification, upper panels ×100; lower panels ×400). Data are expressed as the mean ± SEM. *P < 0.05, **P < 0.01 in comparison with the corresponding controls. Supporting Fig. 2. Infused BMC influence the frequencies of CD4+CD25+Foxp3+ Tregs and F4/80+CD11b+ macrophages but not in those of NK and granulocytic cells in fibrotic liver. Mice with 2-week CCl4–induced liver fibrosis were sacrificed at 12 or 24 hours after infusion of BMC of GFP+ mice via tail vein and liver MNCs and tissues were isolated or collected. (A) Liver MNCs were first gated with CD45+ cells and then analyzed with gates of lymphocytes, monocytes and granulocytes. (B) Treg in liver MNCs were analyzed by FACS using antibodies to CD4, CD25 and Foxp3 after infusion of BMC at 12 or 24 hours. (C) FACS analyses were performed using antibodies to CD3, NK1.1, Gr1, F4/80 and CD11b. (D) Frozen liver tissues were immunostained with F4/80 antibody and DAPI (original magnification, upper panels 400; lower panels ×800). (E) Frozen liver tissues were immunostained with F4/80 antibody at 24 hours after GFP+ BMC infusion (original magnification, ×800). Data are expressed as the mean ± SEM *P < 0.05, **P < 0.01 in comparison with the corresponding controls. Supporting Fig. 3. Infused BMC subtypes CD11b+Gr1+F4/80+ and CD11b+Gr1highF4/80- play important roles in IL-10 production in fibrotic livers of recipient mice. Mice with 2-week CCl4–induced liver fibrosis were sacrificed at 12 or 24 hours after infusion of BMC of GFP+ or CD45.1+ mice via tail vein. Liver MNCs were isolated and subjected to FACS analyses. (A, B) The percentages of subsets of 8 GFP+ BMC at 12 and 24 hours after BMC infusion. Supporting Fig. 4. Co-culturing BMC with HSCs. (A) Isolated HSCs from healthy mice were cultured on plastic dish for 4 days (D4 HSCs). Then freshly isolated BMC of mice were co-cultured with activated D4 HSCs (HSCs:BMC = 1:10). Co-cultured BMC were quickly attached to D4 HSCs at early time point (5 min). (B) After coculturing, the adherent and floating BMC of mice were harvested and subjected to RTPCR. (C) Human HSCs (LX-2 and hTERT) were co-cultured with human BMC of HBV patients for 6 hours after 6 hour-starvation of human HSCs (HSCs:BMC = 1:10). (D) Depending on the improvement of Child-Pugh scoring and albumin levels, patients (n=15) were divided into effective group (n=10) or non-effective group (n=5) after autologous BMC infusion and then analyzed IL-10 levels in blood of noneffective group. (E) Schematic presentation of autologous bone marrow infusion procedure. (F) Changes of serum albumin levels after 6 months of autologous BMC infusion. Data are expressed as the mean ± SEM. *P < 0.05 in comparison with the corresponding controls. Supporting Fig. 5. Co-culturing BMC with D4 HSCs. Isolated HSCs from healthy mice were cultured on plastic dish for 4 days (D4 HSCs). Then freshly isolated BMC were co-cultured with activated D4 HSCs for 6 to 24 hours (HSCs:BMC=1:10). (A) The frequencies of CD11b+Gr1highF4/80- and CD11b+Gr1+F4/80+ BMC were analyzed by FACS. (B) After co-culturing BMC with D4 HSCs, IL-10 positive cells were analyzed in the adherent and floating BMC. (C) IL-10 positive BMC were analyzed using antibodies to IL-10, CD11b, Gr1 and F4/80. (D) IL-10+CD11b- BMC were analyzed using antibodies to Gr1 and F4/80 but there were no significant differences between both groups. (E) To define the features of CD11b+Gr1highF4/80- and CD11b+Gr1+F4/80+ BMC, they were analyzed using additional antibodies to Ly6G and Ly6C. CD11b+Gr1highF4/80- and CD11b+Gr1+F4/80+ BMC were identified as CD11b+Ly6G+Ly6Clow and CD11b+Ly6G-Ly6Chigh cells, respectively. (F) As shown in Fig. 5E, selected three populations of BMCs were sorted and defined morphologies (original magnification, upper and middle panels ×400 and lower panel ×1200). Data are expressed as the mean ± SEM. *P < 0.05, **P < 0.01 in comparison with the corresponding controls. 9 Supporting Fig. 6. Infusion of WT BMC does not ameliorate liver fibrosis in RALDH1-/- mice. RALDH1-/- mice with 2-weekCCl4-induced liver fibrosis were infused with isolated whole BMC of WT mice through tail vein and then were sacrificed at 24 h after infusion of BMC. (A) Representative α-SMA staining of liver tissue (original magnification, ×100). (B) There were no significant changes in the population of Gr1+CD11b+ and F4/80+CD11b+ cells in liver. (C) Intrahepatic CD4+CD25+FoxP3+ Treg did not increase in RALDH1-/- mice after infusion of WT BMC at 24 hours. Supporting Fig. 7. Mice with 2-week CCl4-induced liver fibrosis were infused with vehicle, or with isolated whole BMC of control WT or IL-10-/- mice through the tail vein. Mice were sacrificed at 12 and 24 hours after BMC infusion. MMP-9 (A) and MMP-13 (B) mRNA levels in liver MNCs were determined using qRT-PCR analyses. Data are expressed as the mean ± SEM. *P < 0.05 in comparison with the corresponding controls. 10 References 1. Jeong WI, Park O, Radaeva S, Gao B. STAT1 inhibits liver fibrosis in mice by inhibiting stellate cell proliferation and stimulating NK cell cytotoxicity. Hepatology 2006;44:1441-51. 2. Kim JK, Park YN, Kim JS, Park MS, Paik YH, Seok JY, Chung YE, Kim HO, Kim KS, Ahn SH, Kim do Y, Kim MJ, Lee KS, Chon CY, Kim SJ, Terai S, Sakaida I, Han KH. Autologous bone marrow infusion activates the progenitor cell compartment in patients with advanced liver cirrhosis. Cell transplantation 2010;19:1237-46. 3. Schanz U, Gmur J. Rapid and automated processing of bone marrow grafts without Ficoll density gradient for transplantation of cryopreserved autologous or ABO-incompatible allogeneic bone marrow. Bone Marrow Transplant 1992;10:50713.