S1 Table. - figshare

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S1. Supplementary tables 1: Proteomic analysis of fetal bovine serum (FBS)

Name of the protein

Molecular weight

(KDa)

25.1

Type of protein

Structural protein 1 Crystallin, beta A1

2 Crystallin, beta A1 subunit 13.1

3 Retinol binding protein, interstitial 39.6

Structural protein

Glycoprotein

4 Bradykinin 1.1

Nonapeptide/ improves the quality

of cryopreserved semen [1]

5

Beaded filament structural protein

2, phakinin (bovine)

6 Crystallin, gamma B

7

Aldehyde dehydrogenase 3 family, member A1

Tyrosine 3-

8 monooxygenase/tryptophan 5monooxygenase activation protein, beta

9

Crystallin, gamma S c-terminal domain

10

Versican V3 splice-variant precursor

45.5

10.3

26.7

27.8

10.3

74.7

Intermediate filament

Structural protein

Enzyme

Enzyme/suppresses several

apoptotic pathways [2,3]

Structural protein

Proteoglycan

35.4 Structural protein 11 Crystallin, zeta

12 AE binding protein 1

13

Chaperonin containing TCP1, subunit 8 (theta), partial

82.3

19.8

DNA binding protein

Protein chaperone

14 Heat shock 70KDa, chain A 41.2

20.4

Chaperone protein cytoprotective properties explained by its anti-

apoptotic function [4]

Glycoprotein 15 Fibronectin variable region

16

Creatine kinase, bovine retinal chain a

17

Crystallin, gamma A (c18s mutant of bovine)

42.6

20.9

Enzyme

Structural protein

18

19

Filamin A interacting protein 1, partial

Crystallin, alpha B

20 Crystallin, alpha A (Bos taurus)

53.1

20.0

19.8

Globular protein/inhibits apoptosis induced by the mechanical forces

[5]

Structural protein

Structural protein

113.3 Membrane protein 21 Contactin 1, precursor

22

Beaded filament structural protein

2, phakinin (Bos taurus)

23 Retinal dehydrogenase 1

24 Ezrin

45.9

54.8

68.7

Lens structural protein

Enzyme

Membrane protein

25

Retinol-binding protein 3

(precursor)

Serpin peptidase inhibitor, clade F

26

(alpha-2 antiplasmin, pigment epithelium derived factor), member

1 (precursor)

27

Protein disulfide isomerase family

A, member 6 (precursor)

28 Transthyretin (precursor)

139.6

46.2

57.2

15.7

29 Clusterin preproprotein

30 Crystallin, beta A2

31 Crystallin, beta B1

32

Phosphatidylinositol-specific phospholipase D (precursor)

33

Spondin 1, extracellular matrix protein (precursor)

51.1

22.2

28.1

92.5

90.9

34 Elongation factor 1 alpha 13.0

35 Tubulin, alpha 1 10.4

36 Elongation factor 1 gamma

37

Heat shock protein 90KDa beta, partial

38

Glutamic-oxaloacetic transaminase

2, cytoplasmic

39 Transketolase

40 Crystallin, beta A4

41 Decorin, 2b

42 Creatine kinase, muscle

17.2

27.8

46.4

9.6

22.5

36.3

43.0

43 Heat shock protein 90KDa alpha 84.7

44

UDP-GlcNAc:betaGal beta-1,3-Nacetylglucosaminyltransferase 6

45

Rab geranylgeranyltransferase, alpha subunit

46 Crystallin, gamma C

47 Triosephosphate isomerase

48 Complement factor B, partial

49 Albumin, partial [Bos indicus]

50 Phosphoglycerate kinase 1

51

Secreted frizzled-related protein 2 precursor

43.8

38.1

20.9

26.7

9.1

53.9

44.5

33.3

Carrier protein

Secreted protein/plays antiapoptotic role by inhibiting lysosomal degradation of Bcl-xL

[6]

Enzyme

Thyroxine binding pre-albumin

Glycoprotein/inhibits apoptosis by

interacting with activated Bax [7]

Structural protein

Structural protein

Enzyme

Secreted protein

Enzymatic delivery of aminoacyl tRNAs to the ribosome and nuclear export of proteins

Globular protein/binds to dynein in sperm and forms cold resistant

microtubules [8]

Enzymatic delivery of aminoacyl tRNAs to the ribosome

Chaperone protein

Enzyme

Enzyme

Structural protein

Proteoglycan

Enzyme

Chaperone protein protect cells

from ROS [9], involved in freezing

resistance of bull sperm [10]

Enzyme

Enzyme

Structural protein

Enzyme

Glycoprotein

Globular protein/replaces FBS for

cryopreservation of cells [11]

Enzyme

Glycoprotein

52 Carbonic anhydrase III

53 NSFL1 (p97) cofactor (p47)

54 Tubulin, alpha 4a

55 Enolase 3 (beta, muscle)

29.4

40.6

49.6

47.1

56 Phosphorylase, glycogen; brain

57 GPD1, partial

58

Glyceraldehyde-3-phosphate dehydrogenase

59 Vimentin

96.3

37.0

24.2

53.7

60 Selenium binding protein 1

61

Leucine-rich alpha-2-glycoprotein

1 precursor

62 Keratin 7, type II

52.5

38.3

51.5

63

Protein HP-25 homolog 2 precursor

22.9

64 Alpha-1-B glycoprotein precursor 53.5

65

Glyceraldehyde-3-phosphate dehydrogenase pseudogene 2

66 Phosphoglucomutase 5 partial

35.8

45.1

67 Gelsolin 80.7

68 Phosphofructokinase, liver

69 Complement component 3

70 Keratin 5, type II

85.2

187.1

62.6

71 Fibulin-1 precursor

Ribonuclease L (2',5'-

72 oligoisoadenylate synthetasedependent)

73

Inter-alpha-trypsin inhibitor heavy chain 2 precursor

74

CAP, adenylate cyclase-associated protein, 2

75 Uridine phosphorylase 1

77.5

81.7

106.1

53.7

33.9

76

Dickkopf WNT signaling pathway inhibitor 3precursor

80 Biotinidase precursor

38.4

77 Albumin

78

Fumarylacetoacetate hydrolase

(fumarylacetoacetase)

69.2

46.1

79 Quiescin Q6 sulfhydryl oxidase 1 62.9

58.3

81 FK506 binding protein 1A, 12KDa 11.8

Enzyme

ATPase

Globular protein

Enzyme/efficiently replaces DMSO for rat hepatocytes cryopreservation

without cellular toxicity [12]

Enzyme

Enzyme

Enzyme

Intermediate filament protein

Enzyme

Glycoprotein

Cytoskeletal protein

Hibernation specific plasma protein

Glycoprotein

Enzyme

Enzyme

Lysophosphatidic acid transport protein/control and execution of

apoptosis [13] with anti-oxidant properties [14]

Enzyme

Glycoprotein

Cytoskeletal protein

Calcium binding glycol protein

Enzyme

Carrier protein

Enzyme

Enzyme

Secreted protein

Globular protein

Enzyme

Enzyme

Enzyme

Enzyme

82

Leucine aminopeptidase 3

(unligated)

83 Crystallin, beta A1

52.6

20.7

84 Alpha-2-macroglobulin precursor 167.5

85 Secernin 1

86 Heat shock 70KDa protein 4

89 Keratin 14, type I

46.1

94.4

87

Tubulin-colchicine-phomopsin A, chain D

49.9

88 Phosphogluconate dehydrogenase 53.0

51.8

109.1 90 Kinesin family member 5C

Crystal structure of human STAM1

91 VHS domain in complex with ubiquitin, chain g

Ca Model Of Bovine TricCCT

92

DERIVED FROM A 4.0

ANGSTROM Cryo-Em Map, chain Q

93 Crystallin, alpha A (bovine)

94 Transcriptional regulator ICP4

8.3

55.7

11.6

141.7

95 Filamin A, alpha

96

Nucleosome assembly protein 1like 4

275.4

44.0

99.3 97 Actinin, alpha 2, partial

98

Sortilin-related VPS10 domain containing receptor 1

99 T-complex 1, zeta

100 Complement factor B precursor

129.9

53.5

85.3

101 Heat shock protein 90KDa beta 78.6

102 Endopin 1b-like 26.3

103 Tight junction protein (ZO) 1

104

EGF-like, fibronectin type III and laminin G domains

105 Keratin 10, type I

106

Oligodendrocyte myelin glycoprotein

144.0

99.6

54.5

49.4

Enzyme

Structural protein

Globular protein/proteinase inhibitor and anti-apoptotic protein

[15]

Exocytosis regulating protein

Chaperone protein

Globular protein

Enzyme

Cytoskeletal protein

Motor protein

Trafficking protein

Chaperone protein

Structural protein

Nuclear protein

Globular protein/protect the cells

from force induced apoptosis [16]

Interact with both core and linker histones

Actin binding protein regulate cell survival by TNF-alpha-induced

survival signalling [17]

Associates with serum lipoproteins

Molecular chaperone

Glycoprotein

Chaperone protein/protect cells

from ROS [9], involved in freezing

resistance of bull sperm [10]

Serpin protease inhibitors/inhibits cysteine proteases and elastase-like serine proteases therefore,

eventually inhibiting apoptosis [18]

Transmembrane protein

Glycoprotein

Cytoskeletal protein

Glycoprotein

107

Protein phosphatase 2, regulatory subunit A, alpha

65.2

108 Hemicentin 1 612.2

109 Tripeptidyl peptidase I precursor 61.2

110 Apolipoprotein A-I like 23.6

111

Fatty acid binding protein 5, epidermal

112 N-myc downstream regulated 1

113 RAN binding protein 6

114

CAP, adenylate cyclase-associated protein 1 like

115 BRCA1 cofactor

116

Actin, gamma 2, smooth muscle, enteric

117

Malic enzyme 1, NADP(+)dependent, cytosolic

118 ATPase, class V (ER)

119 Talin 1

120 Ankyrin 2, neuronal like

121

ABI family, member 3 (NESH) binding protein

122 Keratin 1, type II

123

Eukaryotic translation initiation factor 3, subunit F pseudogene 2

124 Unnamed protein product

11.9

41.6

47.3

51.3

87.6

39.7

58.9

89.2

269.7

433.4

39.3

63.1

35.6

47.2

125 Karyopherin (importin) beta 1 97.2

126 Clathrin, heavy chain

127

Dynein, cytoplasmic 1, heavy chain 1

128

NAD(P)H dehydrogenase, quinone

2

129 Keratin 1b, type II

130

Protein tyrosine phosphatase, receptor-type, Z polypeptide 1

131

RNA polymerase, sigma-24 subunit

132

Ceruloplasmin (ferroxidase) precursor

Model Refined Against Symmetry-

133 free Cryo-em Map Of Tric-adp,

Chain P

186.8

531.6

55.5

50.0

168.4

22.8

120.7

55.0

Enzyme

Immunoglobulin superfamily

Enzyme

High density lipoprotein/promote proliferation and inhibits apoptosis

of cells [19]

Intracellular binding protein

Helix-loop-helix protein

Nuclear transport receptor

Enzyme

Induce large-scale chromatin reorganization

Globular protein

Enzyme

Enzyme

Actin binding protein

Integral membrane protein

Enzyme

Cytoskeletal protein

Involved in initiation of translation

Protein involved in transport of molecules between cytoplasm and nucleus

Involved in membrane traffic pathways

Motor protein

Enzyme

Cytoskeletal protein

Enzyme

Enzyme

Enzyme

Chaperone protein

134 Glucose-6-phosphate isomerase

135 Profilin, chain A

136

Group-specific component

(vitamin D binding protein)

137 Thioredoxin

62.8

41.6

53.3

11.8

138 Alpha-2-macroglobulin variant 22 77.3

139 Heat shock 70KDa protein, partial 69.4

140 Hypothetical protein A7H1H_1263 38.4

141 tRNA methyltransferase 5 57.2

142 Contactin 4 113.2

124.0 143 Fibulin 2

144 DCC netrin 1 receptor

145 Complement component 4A

146

Amyloid beta (A4) precursor protein-binding

147 Crystallin, beta S

148

Eukaryotic translation initiation factor 4A1

149 Transferrin

141.1

187.7

76.6

20.9

45.0

77.6

150 Fibronectin 239.3

151 Glutathione S-transferase mu 1 21.1

152 Neuronal cell adhesion molecule 130.8

153 Filamin C 277.2

154 Lumican 38.7

155 Keratin 2, type II

156 Tubulin, alpha 1c

157

Cullin-associated and neddylationdissociated 1

158

Eukaryotic translation initiation factor 3, subunit L

159

Hsc70-interacting protein isoform

X1

160

Protein kinase C and casein kinase substrate in neurons 2

161 Plexin B2

162 Ankyrin 2, neuronal

163

Superoxide dismutase 3, extracellular

64.1

46.0

123.8

61.0

40.2

51.4

204.8

363.9

26.2

Enzyme

Actin binding protein

Globular protein

Enzyme

Globular protein/proteinase inhibitor and anti- apoptotic protein

[15]

Chaperone protein

Globular protein

Enzyme

Membrane protein

Calcium binding glycol protein

Transmembrane protein

Glycoprotein

Adaptor protein localized in the nucleus

Structural protein

Enzyme

Glycoprotein

Glycoprotein/induce cell

proliferation, inhibit apoptosis [20],

improves fertility rate of

cryopreserved sperm [21]

Enzyme

Glycoprotein

Globular protein

Proteoglycan/promote cell proliferation and regulates

apoptosis [22]

Cytoskeletal protein

Globular protein

Enzyme

Initiation of protein synthesis

Chaperone protein

Enzyme

Semaphorin membrane receptor protein

Integral membrane protein

Enzyme/antioxidant and helps in reducing ROS and delaying

164 Follistatin-like 4

165 Dihydropyrimidinase-like 2

166 Pyruvate kinase, muscle

167 Phosphorylase, glycogen, liver

168 Actinin, alpha 1

78.8

58.1

56.9

97.4

102.4

169 Spectrin, beta, non-erythrocytic 1 272.5

170 Spectrin, alpha, non-erythrocytic 1 283.7

171

Beaded filament structural protein

1, filensin isoform X2

172

Beaded filament structural protein

1, filensin isoform X3

173

Rho GDP dissociation inhibitor

(GDI) beta

174 Glutathione synthetase

175

Tissue specific transplantation antigen P35B

Ectonucleotide

176 pyrophosphatase/phosphodiesteras e 2

177 Opticin

178 Complement factor H-related

179 Enolase 1, (alpha)

180 Calsyntenin 1

181 Agrin

182 Crystallin, beta B3

183 Seizure related 6 homolog

WAP, Kazal, immunoglobulin,

184 Kunitz and NTR domaincontaining protein 2 isoform X2

185

Aminopeptidase puromycin sensitive

186 Keratin 42, type I

187

Ubiquitin-conjugating enzyme

E2,O

Serpin peptidase inhibitor, clade A

188 (alpha-1 antiproteinase, antitrypsin)

189 Drebrin-like

190 Cell adhesion molecule L1-like

74.2

70.0

45.4

52.1

36.0

100.1

53.0

86.1

50.3

124.5

46.1

43.7

130.3

35.7

35.2

47.3

106.2

207.0

24.3

105.9

apoptosis [23]. Influences the

functional competence of

cryopreserved spermatozoa [24]

Glycoprotein/minimizes apoptosis

[25]

Enzyme

Enzyme

Enzyme

Actin binding protein/regulate cell survival by TNF-alpha-induced

survival signalling [17]

Actin crosslinking and molecular scaffold protein

Actin crosslinking and molecular scaffold protein

Intermediate filament

Intermediate filament

GDP dissociation inhibitor protein

Enzyme

Enzyme

Enzyme

Small Leucine-Rich Repeat Protein

Glycoprotein

Enzyme

Transmembrane protein

Proteoglycan

Structural protein

Transmembrane receptor

Globular protein

Enzyme

Cytoskeletal protein

Enzyme

Enzyme/ inhibits apoptosis by

regulating caspase-3 [26]

Actin binding protein

Transmembrane protein

191 Transketolase isoform X2 63.1

192 Filamin B, beta isoform X5

193 Filamin B, beta isoform X6

275.3

233.2

194

Complement component 4A isoform X1

187.6

195 Aldolase A, fructose-bisphosphate 39.4

196

N-terminal Xaa-Pro-Lys Nmethyltransferase 1

69.7

197 Cadherin-related family member 1 90.0

198

Amyloid beta (A4) precursor-like protein 2

199

Rho GDP dissociation inhibitor alpha

200

Ubiquitin-like modifier activating enzyme 1

201 Cytoplasmic protein

202

StbB stable plasmid inheritance protein B

80.9

45.5

117.8

13.6

14.6

203 Y box binding protein 3

204 Tubulin, beta 2B class IIb

205

ATPase, Na+/K+ transporting, alpha 1 polypeptide

206 LPS-assembly protein

Crystal structure of bovine serum

207 albumin in complex with naproxen, chain B

48.5

10.3

67.0

101.6

66.4

Enzyme

Globular protein

Globular protein

Glycoprotein

Enzyme

Enzyme

Transmembrane protein

Serine-type endopeptidase inhibitor

Inhibitor protein

Enzyme

Plasmid stability protein

Transcription factor

Globular protein

Enzyme

Membrane assembly protein

Globular protein

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2. Gardino AK, Yaffe MB (2011) 14-3-3 proteins as signaling integration points for cell cycle control and apoptosis. Semin Cell Dev Biol 22: 688-695.

3. Rosenquist M (2003) 14-3-3 proteins in apoptosis. Braz J Med Biol Res 36: 403-408.

4. Rerole AL, Jego G, Garrido C (2011) Hsp70: anti-apoptotic and tumorigenic protein.

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Serum-Based Medium. Biopreserv Biobank 9: 229-236.

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13. Burtnick LD, Urosev D, Irobi E, Narayan K, Robinson RC (2004) Structure of the Nterminal half of gelsolin bound to actin: roles in severing, apoptosis and FAF. EMBO

J 23: 2713-2722.

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Trypanosoma cruzi: alpha-2-macroglobulin regulates host cell apoptosis induced by the parasite infection in vitro. Exp Parasitol 118: 331-337.

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21. Glander HJ, Herrmann K, Haustein UF (1987) The equatorial fibronectin band (EFB) on human spermatozoa--a diagnostic help for male fertility? Andrologia 19: 456-459.

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78: 957-971.

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24. Waheed MM, Gouda EM, Khalifa TA (2013) Impact of seminal plasma superoxide dismutase and glutathione peroxidase on cryopreserved buffalo spermatozoa. Anim

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25. Liang X, Hu Q, Li B, McBride D, Bian H, et al. (2014) Follistatin-like 1 attenuates apoptosis via disco-interacting protein 2 homolog A/Akt pathway after middle cerebral artery occlusion in rats. Stroke 45: 3048-3054.

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