Electronic Supplementary Material Online Resource Fig. S1 Goodness-of-fit plots for the full dataset model. Black line is the unity line in the 2 upper panels. Red solid line represents the linear regression line in the upper panels and the LOESS smoother in the lower panels; DV is corrected FIX activity and unit is IU/dL (%); PRED is the prediction by population pharmacokinetic parameter estimates and unit is IU/dL; IPRED is the prediction by individual pharmacokinetic parameter estimates and unit is IU/dL; CWRES is conditional weighted residual; TIME unit is hour. DV dependent variable, FIX factor IX 1 Online Resource Table S1 Summary of rFIXFc population pharmacokinetic model derived from the full dataset Population estimate (95% CI)a Parameter BW 0.432 ) 73 CL = Typical CL × ( Typical CL for a 73-kg patient (dL/h) BW exponent on CL 2.21 (2.10, 2.32) 0.432 (0.251, 0.613) BW V1 = Typical V1 × ( 73 )0.517 Typical V1 for a 73-kg patient (dL) BW exponent on V1 70.6 (66.3, 74.9) 0.517 (0.282, 0.752) Q2 (dL/h) 1.63 (1.39, 1.87) V2 (dL) 99.1 (84.6, 114) Q3 (dL/h) 45.6 (35.6, 55.6) V3 (dL) 40.7 (38.3, 43.1) IIVb on CL, % 19.7 (16.6, 22.8) IOVc on CL, % 17.8 (17.0, 18.7) IIV on V1, % 21.7 (17.9, 25.6) IOV on V1, % 13.8 (12.3, 15.3) IIV on Q2, % 48.1 (38.5, 57.6) IIV on V2, % 51.0 (40.6, 61.3) Correlation between IIV on CL and V1, % Proportional residual error, % Additive residual error, IU/dL a 60.7 14.8 (9.56, 20.1) 0.279 (0.112, 0.445) 95% CI: The lower and upper limits for 95% CI were calculated asymptotically using the standard errors estimated by the covariance step in NONMEM b IIV calculated as √𝑣𝑎𝑟𝑖𝑎𝑛𝑐𝑒× 100 c IOV calculated as √𝑣𝑎𝑟𝑖𝑎𝑛𝑐𝑒 × 100 BW body weight, CI confidence interval, CL clearance, IIV inter-individual variability, IOV interoccasion variability, rFIXFc recombinant factor IX FC, RSE relative standard error, Q2 inter- 2 compartmental clearance of compartment 2, Q3 inter-compartmental clearance of compartment 3, V1 volume of compartment 1, V2 volume of compartment 2, V3 volume of compartment 3. 3 Online Resource Table S2 Comparison of pharmacokinetic parameters derived from population pharmacokinetic post hoc analysis and conventional pharmacokinetic analysis for phase III study Parameter (units) Population pharmacokinetics post hoc (n=123) Geometric mean (95% CI) Conventional pharmacokinetics analysis (n=22)a Geometric mean (95% CI) CL (mL/h/kg) 3.3 (3.2, 3.5) 3.2 (2.8, 3.6) Vss (mL/kg) 280.8 (266.4, 296) 314.8 (277.8, 356.8) Terminal half-life (h) 81.1 (76.5, 86.1) 82.1 (71.4, 94.5) MRT (h) 84.1 (79.8, 88.6) 98.6 (88.2, 110.3) a Pharmacokinetic parameters derived from 22 patients with intensive sampling schedule in Arm 1 sequential pharmacokinetic subgroup [8] CI confidence interval, CL clearance, MRT mean residual time, Vss volume of distribution at steady state 4