FGFRS IN BREAST CANCER: EXPRESSION, DOWNSTREAM EFFECTS AND POSSIBLE DRUG TARGETS MASTER THESIS BY MILOU TENHAGEN DECEMBER 2010 SUPERVISOR: DR. PETRA VAN DE GROEP STUDENT NUMBER: 3158136 M.TENHAGEN@STUDENTS.UU.NL INDEX INDEX ........................................................................................................................................................ 2 ABSTRACT .................................................................................................................................................. 3 INTRODUCTION TO BREAST CANCER ................................................................................................................ 4 CHAPTER 1: FIBROBLAST GROWTH FACTOR RECEPTORS: .................................................................................... 6 CHAPTER 2: GENETIC ABERRATIONS IN FGFRS IN BREAST CANCER PATIENTS ........................................................ 8 CHAPTER 3: MOLECULAR IMPLICATIONS OF GENETIC ABERRATIONS IN FGFRS ON TUMOR CHARACTERISTICS .......... 16 CHAPTER 4: DRUGS IN DEVELOPMENT AND POTENTIAL DRUG TARGETS ............................................................. 22 CONCLUSION & DISCUSSION ....................................................................................................................... 26 REFERENCES.............................................................................................................................................. 29 FGFRs in breast cancer: expression, downstream effects, and possible drug targets 2 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl ABSTRACT In the search of new drugs to treat cancer patients, many targeted therapies are being developed. Fibroblast growth factor receptors (FGFRs) are one of the many molecules that are currently under investigation for their potential as a drug target in breast cancer patients. These receptor tyrosine kinases play a major role in several processes including proliferation, angiogenesis, and migration. Alterations in these basal processes can contribute to the development and progression of tumors. In breast cancer patients, several subgroups of patients have been identified to harbor genetic aberrations in FGFRs. These genetic aberrations include amplifications of FGFR1, -2 and -4, and mutations in FGFR2 and -4. Multiple in vitro and in vivo models have partly elucidated the molecular implications of these different genetic aberrations on the characteristics of the tumors. Based on these results several drug targets have been suggested. For some of these targets drugs have already been developed, which are currently being tested in in vitro and in vivo settings. Future experiments will have to be performed in order to further clarify the molecular implications of the genetic aberrations, to develop and test drugs but also to identify the subgroup of patients that will benefit from these newly developed therapies. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 3 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl INTRODUCTION TO BREAST CANCER In the Netherlands 12.000 women are diagnosed with breast cancer every year and with 1.4 million newly diagnosed cases yearly worldwide, breast cancer is the most common cancer among women1,2. Even though the prognosis is quite good, 458.000 women died from breast cancer in 2008, making it an important cause of death due to cancer3. Histopathological types of breast cancer Table 1: WHO histopathological classification Considering the pathological features, breast of breast cancer and their incidence4 cancers can be divided into invasive and nonSubtypes Incidence invasive carcinomas, which are less severe. Table 1 Non-invasive Carcinomas gives an overview of the types of breast cancers Intraductal carcinoma (DCIS) 15% and their incidence4. Non-invasive carcinomas are Lobular carcinoma in situ (LCIS) 2% confined to either the ductal basement membrane Invasive Adenocarcinomas of the breast or the terminal breast lobules and are Infiltrating ductal carcinoma 60% called ductal carcinoma in situ (DCIS) and lobular (not otherwise specified) carcinoma in situ (LCIS) respectively. LCIS is usually Infiltrating lobular carcinoma 5-10% not treated, but it is considered a risk factor for Mucinous (colloid) carcinoma 2-5% developing an invasive carcinoma (which can be Medullary carcinoma 1-5% both lobular and ductal)4. In contrast to DCIS and Tubular carcinoma 2-5% LCIS, invasive carcinomas spread into the Papillary carcinoma 2-5% surrounding tissues. Because of this invasive Other types 1-5% character, these carcinomas are able to metastasize resulting in a worse prognosis for the patient4. Infiltrating ductal and lobular carcinomas have their origin in the ducts or lobules of the breast respectively and have invaded into the surrounding breast tissue. Mucinous, medullary, tubular, and papillary carcinomas are all subtypes of infiltrating ductal carcinomas. These subtypes can be distinguished by the shape, size, or surrounding structures of the tumor cells. The tumor cells of mucinous carcinomas are surrounded by mucin, whereas medullary carcinomas can be recognized by the shape of the tumor which resembles the medulla of the brain. Tube-shaped cells are characteristic for tubular carcinomas and the tumor cells of papillary carcinomas are shaped like threads5. Other types of invasive breast cancers include inflammatory carcinoma and Paget’s disease. Inflammatory carcinoma is an invasive ductal carcinoma which invades into the lymph system very early, whereas Paget’s disease is a DCIS that invades into the nipple4. Next to these pathological types, the development of breast cancer can also be divided in stages that describe the progress of the tumor growth. This classification is based on the size and spread of the tumor, the spreading of tumor cells into the lymph nodes, and further metastasis into other organs4. Finally, several histological grading systems have been developed that asses the grade of differentiation by scoring the mitotic rate, the formation of tubules, and the presence of nuclear pleomorphisms6. The combination of the histopathological type, the stage, and the grade of the tumor determine the prognosis for the patient. In general, the higher the stage and grade, the poorer the prognosis is4, 6. Treatment options The current therapies for breast cancer are very diverse. First of all, breast cancer treatments can be divided into local and systemic therapy. Local therapy includes breast surgery and radiation which both focus on the malignant cells in the breast. The surgery can be breast-conserving (lumpectomy) or includes the removal of the entire breast (mastectomy). This depends on the size and spreading of the tumor in the breast. Systemic therapy intends to target cancer cells throughout the body by chemotherapy, hormone therapy and/or targeted therapy4. What type of treatment is applied, is not FGFRs in breast cancer: expression, downstream effects, and possible drug targets 4 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl only based on the histopathological type, stage, and grade, but is also based on the genetic aberrations present in the patient. These genetic aberrations can be small mutations in oncogenes or tumor suppressor genes, but also amplifications or losses of genes or translocations. Since these genetic aberrations are highly heterogenic among different patients, different hormone therapies and other targeted therapies have been developed in order to achieve a personalized treatment. Most genetic aberrations in cancer patients accumulate during life. Breast cancer however can also be partly inherited, resulting in a much higher risk of developing breast cancer for people who have two or more first-degree relatives with breast cancer4. Two genes that play a role in the inheritance of breast cancer are mutations in the tumor suppressor genes BRCA17, and BRCA28. Because of a genetic predisposition in one of these genes, most familiar breast cancers occur earlier in life whereas most late-onset breast cancer patients do not have a known family history of breast cancer9. The presence of inherited and somatic mutations in cancer patients can be seen as markers that play a role in the development, progression, and/or the resistance to therapy. Because of the increasing knowledge about the involvement of these specific genotypes in breast cancer, the therapies that are currently being developed are more and more focusing on the targeting of these genotypes by the use of hormone therapies and other targeted therapies10. In order to develop these therapies, it is important to fully understand the molecular basis of the oncogenic pathways. One of the experiments performed to unravel this, is the expression profiling of over 100 unselected breast cancer samples. This has led to the identification of five distinct molecular subtypes: basal-like, luminal A, luminal B, ERBB2-overexpression and normal breast like11, 12 . These subtypes have different survival rates, but more importantly they show a different response to treatment13. This proves the importance of analyzing the molecular profile of each patient separately in order to determine the most effective treatment plan. As a result, much research is currently ongoing to identify markers and how to determine the right therapy for each single patient. An example of a hormonal therapy that is only affective in a subgroup of patients is tamoxifen. This estrogen-agonist blocks the estrogen receptors expressed by breast cancer cells. This treatment is only effective for hormone positive carcinomas: estrogen receptor-positive (ER+) and/or progesterone receptor-positive (PR+) carcinomas. The malignant cells in these tumors express a certain threshold level of these receptors, making them dependent on estrogen for their survival and are therefore called hormone sensitive14. One of the targeted therapies currently used for a subset of breast cancer patients is the monoclonal antibody Herceptin. This antibody is directed against the extracellular domain of the Her2 receptor (also known as the ERBB2 receptor). Again, this only works for breast cancers that are Her2 positive15. The target of Herceptin is the Her2 receptor, a member of the receptor tyrosine kinase (RTK) family. This receptor family plays an important role in important biological processes like proliferation, differentiation, and apoptosis. Since these processes are often deregulated in cancer, the members of the RTK family have been an interesting drug target over the last couple of years, resulting in a large amount of tyrosine kinase inhibitors such as Herceptin and Gleevec16. One of the RTK-subgroups that is currently under investigation for its involvement in breast cancer is the family of fibroblast growth factor receptors (FGFRs). In this thesis, the signaling network and the involvement of FGFRs in normal cells are described first. The second chapter will focus on the findings of genetic alterations in FGFRs in breast cancer patients. Also, the association of these alterations with other clinicopathological parameters is discussed. In chapter three, the effects of these genetic aberrations on signaling and characteristics of the malignant cells will be explained by in vitro and in vivo experiments performed. Chapter four will focus on possible drugs, targeting the abnormal FGFR signaling in breast cancer patients. Finally, future goals concerning the identification of mutations in patients and drug design will be discussed. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 5 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl CHAPTER 1: FIBROBLAST GROWTH FACTOR RECEPTORS: EXPRESSION AND SIGNALING Fibroblast growth factor receptors form a subgroup within the RTK family consisting of four members in mammalians: FGFR1, 2, -3, and -4 17. Because genetic aberrations in these receptors have been associated with breast cancer in several studies (Chapter 2), they are good candidates to develop drug therapy against. FGFRs consist of an extracellular ligand-binding domain, a transmembrane domain and a cytoplasmic domain. Next to a protein tyrosine kinase domain, the intracellular part of the FGFR contains several regulatory regions18. The extracellular domain can be divided into three immunoglobulinlike domains (Ig1-3, figure 1). IgII and -III are responsible for the binding to ligands: fibroblast growth factors (FGFs)19. Until now, Figure 1: FGF-FGFR structure 18 different secreted FGFs are known to be expressed in a tissue specific way, just as their receptors. This tissue-specific The extracellular domain consists of expression and the differences in binding affinity contribute the three Ig domains to which the ligand specificity of the ligand-receptor interaction17. This specificity is binds. This binding is stabilized by also achieved by splice variation: FGFR1, -2, and -3 express two HPSG. Intracellular, a tyrosine kinase splice variants of the IgIII domain, resulting in a IIIb and IIIc domain is present17. isoform. The IIIb isoform is present on epithelial cells and the IIIc is being expressed by mesenchymal cells19. In order for the FGF’s to bind firmly to their receptors, stabilization by heparin sulphate proteoclycan (HSPG) is needed. HPSG is present on the surface of every cell and binds to FGF’s with a very high affinity. Because of this, FGFs can only bind to receptors present on nearby cells explaining the short-range signaling20. After binding of the ligand, FGF receptors dimerize, which results in the activation of the intracellular kinase domain leading to crossphosphorylation of tyrosine residues present on the intracellular tail17. Activated FGFR’s also phosphorylate FGFR substrate 2 (Frs2) which induces recruitment of growth factor receptorbound 2 (GRB2) and son of sevenless (SOS) that activate the Ras-MAPK pathway, resulting in proliferation and/or differentiation17, 21. Furthermore, recruitment of Grb2-associated binding protein 1 (GAB1) and subsequent recruitment of phospho-inositol 3 kinase (PI3K) activates AKT, resulting in the inhibition of apoptosis. In addition, the phosphorylated tyrosine residues at the C-terminus of the FGF receptor create a binding site for phospholipase C- y1 (PLCy) which is then phosphorylated by the FGF receptor resulting in activation of protein kinase C (PKC) reinforcing the MAPK pathway. Finally, downstream signaling of FGF receptors also includes activation of STAT signaling (Figure 2)17. Figure 2: Fgfr downstream signaling Upon binding of the ligand, the receptors dimerize, resulting in cross-phosphorylation. This leads to the attraction of several docking proteins which can also be phosphorylated. Downstream signaling occurs through four main pathways: PLCy, STATs, AKT, and MAPK17. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 6 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl All of these pathways play an important role in several basic cell processes including proliferation, differentiation, migration and survival. In addition, FGFR signaling is known to be involved in angiogenesis and wound repair17, 18. Which downstream pathway is activated and what the effect on the cells eventually will be, depends on the cell context including the presence of the pathway players, and crosstalk with other signaling pathways22. Moreover, the type of FGFR is also important, for example: downstream activation by FGFR4 is less strong than FGFR123, and FGFR1 signaling sustains longer than FGFR2 because of faster degradation of FGFR2 after activation24. So far, no evidence has been found for an influence of the type of ligand on downstream signaling22. Altogether, if you consider the basic cell processes in which FGFR signaling is involved, perturbation of FGFR could very well contribute to cancer development by an increase in proliferation, infiltration of blood vessels, and by avoiding apoptosis. The genetic aberrations in FGF receptors contributing to breast cancer, their downstream signaling effects, and the possibility to drug these disturbances will be described in the following chapters. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 7 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl CHAPTER 2: GENETIC ABERRATIONS IN FGFRS IN BREAST CANCER PATIENTS As described in the introduction, the development, progression and/or response to therapy of breast tumors is influenced by the genetic aberrations present in the malignant cells. These genetic aberrations can influence the expression levels of the receptors, the functioning of the receptors, or both. In general, the aberrations can be divided into mutations and copy number changes. If a mutation is located in the coding region of the gene, it can influence the functioning of the receptor, for example by changing its subcellular localization, its kinase activity, or its binding properties to ligands or adaptor proteins. If a mutation is located in one of the introns of the gene, this can influence the functioning of the protein by inducing alternative splicing. In addition, a mutation in one of the regulatory gene regions can change the expression of the receptor for example by altering the binding affinity of a transcription factor to this regulatory region. On the other side, copy number alterations can also change the expression level of the receptors. These copy number alterations are a feature of advanced cancers, since the genetic instability increases during the development of cancer25. The paragraphs below describe for each FGFR-gene, the genetic aberrations that have been identified in breast cancer patients. FGFR1 FGFR1 amplifications in breast cancer patients Several studies have identified amplifications of FGFR1 in breast cancer patients 13, 25-30. Other genetic aberrations like somatic or germ-line mutations have not been identified for FGFR1 in breast cancer patients. The chromosomal band 8p11-12, the region in which the FGFR1 gene is located, has been found to be frequently amplified in a group of 145 early-stage breast tumor samples13. Unfortunately, the resolution of the technique that was used (array comparative genomic hybridization: aCGH) was 1Mb, making it unable to identify amplifications at a single gene level. However, RNA microarrays showed that the expression level of FGFR1 was significantly associated with the 8p11-12 copy number, suggesting that amplification of this region resulted in the overexpression of FGFR1 in these breast cancer patients13. Table 1: Copy number alterations in FGFR1 identified in breast cancer patients Type of BC (number of Technique, whole Samples) genome /gene specific Stage II-III BC’s (106) aCGH: 70 kb interval, whole genome Primary BC (161) SNP DNA microarray, whole genome Invasive BC (319) FISH, gene specific Unselected BC (496) CISH, gene specific Invasive BC (104) MLPA, gene specific MPC (micropapillary carcinoma, 12) CISH, gene specific Results: FGFR1 amplification/loss Highly amplified in 10% Reference Amplified in 7,5% 26 Amplified in 9.4% Amplified in 8.7% Amplified in 17% (7%: highly amplified) Lost in 10% Amplified in 16.6% 27 28 29 25 30 Table 1 gives an overview of several studies analyzing the copy number alterations at a single gene resolution. As can be seen, the percentage of FGFR1 amplifications ranges from 7.5-17%. A possible explanation for this big range is that most of these studies included tumor samples of patients without any selection on histopathological type or clinical parameters. Furthermore, each study used a different technique to assess the copy number alterations which can also account for the different percentages. In general, the techniques used can be divided into two subgroups: 1; genome wide FGFRs in breast cancer: expression, downstream effects, and possible drug targets 8 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl analysis and 2; gene specific analysis of gene amplification and/or loss. High-resolution aCGH can be used to identify copy number alterations in the entire genome. When analyzing 106 stage 2-3 breast tumor samples using this technique, FGFR1 was found to be amplified in 10 samples. Again, RNA microarrays proved that the amplification of FGFR1 resulted in significant overexpression of FGFR125. Another genome-wide approach to map amplifications on gene level is by the use of a SNP microarray. By calculating the average increase or decrease for all the probes mapped within a gene, copy number alterations of all genes can be identified. Using this approach, FGFR1 was found to be amplified in 7.4% of 161 breast tumor samples26. Next to genome-wide approaches, copy number gains and losses can be analyzed for specific regions. Two similar techniques are fluorescent in situ hybridization (FISH) and chromogenic in situ hybridization (CISH). Using these techniques FGFR1 was found to be amplified in 9.4% of 319 invasive breast cancer samples27 and in 8.7% of 496 unselected breast cancer samples respectively28. In a smaller study containing 24 pure invasive micropapillary carcinomas, CISH identified FGFR1 amplification in 4 cases (16.6%)30. With multiplex ligation-dependent probe amplification (MLPA) primers specific for FGFR1 are being used resulting in a reliable measurement of the gene copy number. Using this technique on 104 invasive breast cancer samples, amplification of FGFR1 was identified in 17% of the patients29. In addition, loss of FGFR1 was also identified in 10% of the patients. With the exception of Chin et al. describing the deletion of 8p11-12 in breast cancer tumors, no other records are known describing the loss of FGFR1. The identified loss of 8p11-12 was shown to be associated with a poor outcome13. However, since this region contains many genes, it is not sure whether this poor outcome can be contributed to the loss of FGFR1. Association of FGFR1 amplifications with clinical and pathological patient characteristics As described above, amplification of FGFR1 occurs in 7.4-17% of all breast cancer types. Some of the studies mentioned above did not only characterize the copy number alterations of the tumor samples but also analyzed the association of these alterations to clinical characteristics currently used to determine the prognosis and treatment. All of the parameters tested for association with FGFR1 amplifications are described in table 2. Table 2: association of FGFR1 amplification in unselected cohorts with clinical and pathological parameters Parameter Association: yes/no Reference Development of distant metastasis Yes: positive association 28 Grade No 27-29 Tumor size No 26-29 Histopathologic type No 26, 27, 29 Lymph node invasion No 26-28 Vascular invasion No 27, 29 Tumor stage No 26, 28 Molecular subtypes (basal-like, luminal No 27, 28 A/B, ERBB2-positive, normal-like) P53 status No 27 EGFR status No 28 Expression of low- and high-molecular No 28 weight cytokeratins Androgen receptor status No 28 Proliferation Yes: positive association 27 No 29 FGFRs in breast cancer: expression, downstream effects, and possible drug targets 9 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl ER status: positive or negative PR status: positive or negative Age (<50/≥50) Her2 status No Yes: associated with a positive status No Yes: trend with a negative status No Yes: if amplified, more likely to be older than 50 No Yes: inverse correlation with Her2 overexpression Yes: amplification was positively associated with Her2+ status 26-28 29 26, 27, 29 28 27, 29 28 27, 29 28 26 Most of the parameters are not significantly associated with amplification of FGFR1. However, patients with an amplification of FGFR1 are more likely to develop distant metastasis28. Unfortunately, this parameter has not been tested in other large-scale studies. Finally, for several parameters the associations found are inconsistent between different studies. This can be the consequence of a difference in characterization of the parameters, for example: Letessier et al. used the expression of Ki67 as a measurement of proliferation27, whereas Moelans et al. assessed the mitotic activity index to quantify the proliferation29. Also, the Her2 status is assessed differently: Elbauomy Elsheikh et al. and Kadota et al. only discriminate between Her2-positive and Her2negative tumor samples26, 28, whereas Moelans et al. and Letessier et al. subdivide the tumor samples in 0-1+, 2+, and 3+ Her2 expression levels based on IHC27,29. However, for the parameters that were assessed in the same way in different studies other clinical or pathological parameters could act as confounders. In order to exclude these factors, multifactorial analyses are needed. Relationship of FGFR1 amplifications with the patients’ survival Several studies have not only correlated amplification of FGFR1 with the expression of the markers and clinical characteristics described above, but have also performed association analysis of FGFR1 amplification with the clinical outcome. The clinical outcome can be described in different ways. First of all, the disease free survival time (DFS) is used to annotate the length of time after treatment that the patient survives and does not have any signs of relapse. Next to this, the overall survival (OS) is used to determine the time between the treatment and death of the patient. Finally, metastasis free survival (MFS) describes the period between the treatment and the diagnosis of metastasis. In a cohort of 496 unselected breast cancer samples, amplification of FGFR1 was significantly associated with a shorter overall survival and has a trend with a shorter disease-free survival (Figure 1 A,B)28. This prediction of poor overall survival was independent of parameters known to be involved in survival (such as grade, tumor size, lymph node invasion, and ER status). Interestingly, when grouping these patients into ER+ and ER- tumors, FGFR1 amplification remained a significant independent risk factor for poor DFS and OS in ER+ patients (Figure 1 C,D), even being a stronger predictor than grade, size and lymph node invasion. However, in ER- tumors, FGFR1 amplification was not associated with the DFS and OS of the patients28. So maybe there is an interaction between FGFR1 signaling and ER signaling resulting in a poor prognosis. The observation that FGFR1 is associated with a poor prognosis in ER+ breast cancer patients is confirmed in a group of 87 ER+ tumor samples from patients which were treated with adjuvant endocrine therapy (tamoxifen). In this group, FGFR1 overexpression was significantly associated with a poor metastasis free survival compared to samples with normal FGFR1 expression levels31. Finally, two studies show that there is an association between amplification of 8p(11-)12 and a poor disease outcome13, 27. Even though these analyses are not specific for FGFR1, it supports the findings in the previous studies. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 10 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl Figure 1: Kaplan-Meier survival analysis of patients with and without amplification of FGFR1 A: Entire cohort, disease free survival. B: Entire cohort, overall survival. C: ER+ cases, disease free survival. D: ER+ cases, overall survival28. FGFR2 FGFR2 amplifications in breast cancer patients In the genome wide screen identifying copy number alterations using a SNP microarray, not only FGFR1, but also FGFR2 was found to be amplified. Given the fact that it was only amplified in 2 out of the 161 primary breast cancer samples (1.2%), it was considered to be infrequently amplified26. Other genome wide screens analyzing large groups of unselected BC samples also identified FGFR2 to be rarely amplified32, but others did not find any amplifications or losses of FGFR225. The identification of only rare or no amplification of FGFR2 can be due to the fact that all of these studies analyzed a large number of unselected breast cancer samples without subgrouping them based on histological and/or clinical features. It could very well be possible that FGFR2 is only amplified in a subgroup of breast cancers. Supporting prove for this idea comes from an analysis of 165 triple negative breast cancer samples (meaning ER-, Her2-, and PR-). In this group of patients, FGFR2 was found to be amplified in 4%, whereas no amplification events were found in 214 samples belonging to other subtypes. In addition, the mRNA expression levels of FGFR2 were significantly increased in amplified tumor samples vs. non-amplified tumor samples33, suggesting a potential role for FGFR2 in this subtype of breast cancer. Also in familial breast cancer, FGFR2 is suggested to play a role in a subgroup of patients. When comparing the expression profiles of 7 breast cancer patients with mutations in BRCA1 and 6 breast cancer patients with mutations in BRCA2, FGFR2 was found to be significantly higher expressed in BRCA2 mutation carriers34. SNPs in FGFR2 in breast cancer patients So far, no somatic mutations in FGFR2 have been identified in breast cancer patients35, but there are several germ-line mutations in FGFR2 that are associated with breast cancer risks. A genome-wide study analyzing 1145 invasive breast cancer patients and 1142 controls identified several SNPs to be highly associated with breast cancer risks36, 37. Four of these SNPs were located in intron 2 of FGFR2. An independent study comprising 21860 invasive breast cancer patients and 22578 healthy controls also identified a SNP in intron 2 of FGFR2 to be associated with breast cancer37. The risk allele of this SNP was strongly associated with a positive ER and PR-status, and a lower grade38. Further analysis of the SNPs located in the second intron of FGFR2 has resulted in the identification of a haplotype block of 8 SNPs to be the minor disease-predisposing allele39. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 11 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl Several ideas on how the SNPs located in the second intron of FGFR2 could contribute to breast cancer have been proposed. When correlating the expression levels of FGFR2 in 170 invasive breast cancer samples with the haplotype of the 8 SNPS, RNA levels of FGFR2 were significantly increased in tumor samples that were homozygous for the minor alleles when compared to samples homozygous for the common alleles39. This indicates that the risk genotype results in a change in the expression of FGFR2. Since the sequence of intron 2 contains several possible binding sites for transcription factors it could be that the SNPs influence the binding of these transcription factors, thereby regulating the expression levels of FGFR237. An alternative hypothesis is that the SNPs influence the functioning of the FGFR2 protein. Since the haplotype block of the 8 SNPs is not in linkage disequilibrium with any coding regions of FGFR239, a change in the protein sequence of FGFR2 resulting in a functional difference is excluded. However, the SNPs could induce alternative splicing, resulting in impaired functioning of FGFR2 or a change in the stability of the protein. When studying the two most common splicing variations (including or excluding exon 3) no significant difference was observed between minor homozygotes and common homozygotes39. In vitro evidence for the influence of the SNPs in the expression and functioning of FGFR2 will be further discussed in the chapter 3. FGFR3 Genetic aberrations in FGFR3 in breast cancer patients Even though activating mutations in FGFR3 have been identified in several cancer types40-43 mutations in breast cancer seem to be absent35, 40, 44. There is one breast cancer patient known to carry a heterozygous missense mutation in exon 7 of FGFR3 (P250R)40. This mutation is located in the ligand-binding domain of FGFR3 which leads to activation of the kinase-domain45. Moreover, this mutation is located next to the mutational hotspots found in bladder and cervical carcinomas (R248C, S249C)40. This patient however also suffers from the Saethre-Chotzen syndrome, a disease that is caused by a mutation in FGFR3 in a subset of patients45. Therefore, it is unclear whether the FGFR3 mutation in this patient has a role in the development of breast cancer. To clarify this and to identify additional breast cancer patients carrying an activating mutation in FGFR3, more studies should be performed. FGFR4 Overexpression of FGFR4 in breast cancer patients Next to amplifications of FGFR1 and FGFR2, also amplification of FGFR4 is occasionally found in breast cancer patients. In a small scale study including 30 unselected primary breast cancer samples, 10% of the breast tumors had an amplification of FGFR4. This amplification was associated with an ER+ and PR+ status and lymph node invasion46. Furthermore, in 103 breast tumors the mRNA levels of FGFR4 were found to be elevated in 32% of the samples47 indicating that high levels of FGFR4 could play a role in breast cancer. One of these roles could be the resistance to therapy, as indicated by a retrospective study analyzing 285 ER+ breast cancer samples that were treated with tamoxifen as first-line therapy. In this group of patients, high levels of FGFR4 resulted in a worse outcome as quantified by the tumor size and post-relapse overall survival after treatment. This role of FGFR4 as a predictive factor in tamoxifen treatment was independent of known parameters that predict the clinical outcome48. A molecular explanation why increased levels of FGFR4 are associated with a high chance of failure of tamoxifen treatment will be explained in chapter 3. FGFR4: Gly388Arg polymorphism in breast cancer patients In addition to alterations in expression of FGFR4, mutations in FGFR4 are also present in several cancer types49-52. A mutation of FGFR4 was found after expression and sequence analyses of different RTK’s in several breast cancer cell lines. This led to the identification of a novel missense mutation in FGFRs in breast cancer: expression, downstream effects, and possible drug targets 12 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl the transmembrane domain of FGFR4: Gly388Arg16 now known as SNP rs351855 and further denoted as Arg388. Immunohistochemical analysis of 372 breast cancer samples did not result in any correlation of the SNP genotype with the expression levels53 excluding the possibility of the SNP having influence on the expression level. Sequence analysis of a total number of 1103 breast cancer patients revealed that the Arg388 genotype, either heterozygous or homozygous, was present in 37-43% and 8-11% respectively (Table 3)16, 53-55. When comparing the distribution of the Arg388 allele in healthy controls and breast cancer patients, no significant difference could be identified. This indicates that this polymorphism is not associated with the initiation of breast cancer16. Table 3: FGFR4 Gly388Arg allele distribution in breast cancer patients and controls Group Gly/Gly Gly/Arg Arg/Arg Reference Healthy controls (n=123) Breast cancer patients (n=145) Breast cancer patients (n=234) Breast cancer patients (n=372) Breast cancer patients (n=352) 45% 46% 52% 49% 46% 49% 43% 37% 43% 43% 6% 11% 11% 8% 11% 16 16 54 53 55 Since the minor allele does not seem to be associated with the development of breast cancer, it could be that it influences the progression in the tumor, making this genomic variation a prognostic marker. First of all, when analyzing the coincidence of Arg388 with known prognostic markers, no significant correlation was found for age, Her2 status, ER status, PR status, grade, and triple negative breast cancers16, 53-55. Correlations were found for tumor stage53, 55, tumor size53, and axillary lymph node involvement16, 55, but these associations were not confirmed by other studies16, 53, 54. Finally, when analyzing the disease free survival period, no correlation was found with the Arg388 allele16. However, in 46 unselected primary breast cancer samples from patients positive for lymph node metastasis (N+), but not in N- patients, the disease free survival period was significantly shorter in patients carrying the minor Arg388 allele, than carriers of the common allele Gly388 (Figure 2)16. This suggests that the Arg388 is a marker for increased tumor aggressiveness in advanced breast cancer. Figure 2: Kaplan-Meier survival analysis of breast cancer patients for Fgfr4-388 alleles A: Probability of disease free survival for patients with axillary lymph node involvement B: Probability of disease free survival for patients without axillary lymph node involvement. For both plots, the Gly/Arg carriers were combined with the Arg/Arg carriers into the Fgfr4 Arg388 group16. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 13 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl Even though the involvement of the Arg388 allele in the survival of N+ patients is confirmed by Thussbas et al.53, Jézéquel et al. does not find a significant association of the allele with the DFS of 139 N+ unselected primary breast cancer cases54. An explanation for this discrepancy could be that other clinicopathologic parameters known to influence the patients’ survival act as confounding factors. A multivariate analysis of a large group of N+ patients could exclude this possibility. Association of the Arg388 allele with response to therapy A second explanation for the conflicting statements about the involvement of the Arg388 allele in the survival of N+ patients could be that the type of therapy acts as a confounding factor. Thussbas et al. tried to clarify this by examining the DFS in patient groups that did or did not receive adjuvant systemic therapy, one of the therapies having a great impact on the patients’ survival. If Arg388 is involved in the progression of breast cancer, this influence should be apparent in the DFS of patients not receiving therapy. This however was not the case: the genotype was not associated with the DFS for patients that did not receive adjuvant systemic therapy. However, when adjuvant systemic therapy was applied, the DFS and OS were shorter in patients carrying one or two Arg388 alleles. This result could be directly linked back to the involvement of Arg388 in N+ patients, but not in N- patients, since the administration of adjuvant systemic therapy greatly depends on the nodal status53. Interestingly, when splitting up this patient group into chemotherapy treated patients and patients that receive endocrine therapy, this significant effect of the FGFR4 genotype on DFS only remained significant for the patient group treated with chemotherapy, making it a possible marker for therapy resistance in this patient group (Figure 3)53. A B Figure 3: Kaplan-Meier survival analysis of breast cancer patients for Fgfr4-388 alleles after adjuvant systemic therapy A: Probability of disease free survival for patients treated with adjuvant endocrine therapy B: Probability of disease free survival for patients treated with adjuvant chemotherapy. For both plots, the Gly/Arg carriers were combined with the Arg/Arg carriers into the Fgfr4 Arg388 group53. This dependence on the type of therapy for the FGFR4-388 allele to be a prognostic marker can be a possible explanation for the fact that Jézéquel et al.54 did not find a significant effect of Arg388 on the survival of N+ patients: their patient group could have received different adjuvant systemic therapy. On the other side, Marmé et al. did not find an association between the FGFR4 genotype and DFS in patients treated with adjuvant chemotherapy. More surprisingly, they found that in patients that FGFRs in breast cancer: expression, downstream effects, and possible drug targets 14 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl received chemotherapy before operation (neoadjuvant chemotherapy), the Arg388 allele was significantly associated with a better clinical and pathological response. A multivariate analysis even showed that Arg388 was an independent predictor of a complete pathological response which means that all invasive cancer cells in the breast have disappeared55. Again, the differences in study design and type of therapy could be an explanation for these different results. This shows once again that large-scale studies, analyzing many parameters are needed to confirm the ideas about the involvement of the Arg388 allele in the response to therapy. In summary, amplifications of FGFR1, -2, and -4 are present in breast cancer patients. On top of that, sequence variations have been identified in the FGFR2 and -4 genes. The involvement of genetically aberrant FGFR3 in breast cancer has not been demonstrated. The genetic aberrations in the other FGFRs however, have been shown to contribute to the risk of breast cancer, but also to the progression of the tumor resulting in a worse prognosis, and to the response to therapy. Much research is ongoing to find out the molecular basis for these effects, and the results of these experiments will be described in the next chapter. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 15 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl CHAPTER 3: MOLECULAR IMPLICATIONS OF GENETIC ABERRATIONS IN FGFRS ON TUMOR CHARACTERISTICS Since FGFR’s have so many downstream signaling pathways whose activation depends on several factors, the genetic aberrations identified in patients all influence breast tumors in a different way. In order to unravel the underlying molecular mechanisms, several in vitro and in vivo studies have been performed. The experiments described below give more insight into the effects of abnormal FGFR signaling. FGFR1 iFGFR1 as a model for overactive FGFR1 signaling In order to find out the effects of overactivation of FGFR1, an inducible FGFR1construct was made (iFGFR1) which can be activated by administration of a drug: AP20187, resulting in ligand-independent dimerization of the receptor. In transgenic mice, activation of iFGFR1 resulted in increased phosphorylation of iFGFR1 and downstream targets such as Akt, and MAPK. Furthermore, administration of BrdU showed increased proliferation in the lateral buds and ductal cells in AP20187-treated mice compared to their non-treated littermates. Phenotypically, induction of iFGFR1 resulted in increased lateral budding and ductal branching (Figure 1) of the mammary epithelium56. Figure 1: activated iFgfr1 induces lateral budding and ductal branching A: Normal mammary epithelium of transgenic mice treated with diluent B: Increased lateral budding (arrowhead) and ductal branching (arrows) in transgenic mice after 2 weeks of AP20187 treatment56. When AP20187 was administered for a sustained period of time, the epithelial cells further proliferated, becoming multicellular and eventually forming invasive lesions (Figure 2A). The cells in these invasive lesions have lost their cell polarity, and detach from the basement membrane without anoikis being induced. The invasive character of the lesions is established by several factors. First of all, the myoepithelial cell barrier normally located between the luminal epithelial and stromal cells, is partly absent in transgenic mice treated with AP20187. The absence of these cells is correlated with a reduced and disorganized extracellular matrix (ECM)56, which can be explained by the fact that the myoepithelial cells are responsible for the formation and maintenance of the ECM57. Finally, the invasive lesions in iFGFR1 transgenic mice are surrounded by an increased number of highly branched small vessels56. Again, the loss of myoepithelial cells can play a role in this process, since they secrete anti-angiogenic factors58. Another explanation for the loss of the ECM and increased angiogenesis comes from an iFGFR1 in vitro model made up of a 3D culture of iFGFR1 transfected mouse mammary epithelial cells (HC11 cells) that faithfully recapitulates the morphological changes found in vivo upon iFGFR1 activation59. In these cells, the activity of MMP-2 and -9 is increased upon activation of iFGFR156. Furthermore, the expression of MMP-3 and -9 is induced after 24 hours of administration of AP2018738, 59. This induction of MMPs by FGFR1 signaling is known to be mediated through the Mapk-Erk-pathway 38. These matrix metalloproteases are involved in the breakdown of the ECM, but also induce angiogenesis by increasing the availability of angiogenic growth factors, thereby contributing to the FGFRs in breast cancer: expression, downstream effects, and possible drug targets 16 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl invasive character of the lesions56, 59. In addition to the induction of MMPs, also several indications for irreversible epithelial to mesenchymal transistion (EMT) became apparent in the 3D HC11 iFGFR1 in vitro culture system. This included elevated expression of mesenchymal markers and a loss of cellcell junctions59. These established factors of EMT in addition to loss of polarity and absence of anoikis have also been observed in a 3D culture of iFGFR1 transformed MCF10A cells60, making both iFGFR1 transfected HC11 and MCF10A 3D cultures a reliable model to study the effects of overactive FGFR1 signaling. Figure 2: iFgfr1 induced lesions in the mammary epithelium of transgenic mice A: After administration of AP20187, lateral buds start to appear. This is followed by the multicellularization of the epithelium, eventually resulting in invasive lesions. B: This is accomplished by increased proliferation and remodeling of the ECM. Increased expression of MMPs (●) disrupts the ECM and can induce vascular branching by increasing the availability of growth factors ( ). This disruption of the ECM and increased vascularity is also achieved by the loss of the myoepithelium. Finally, epithelial cell polarity is lost due to misslocalization of E-cadherin and loss of ZO1, also leading to a more invasive phenotype56. How all these processes described above are regulated on a molecular level, either by direct or indirect downstream signaling of FGFR1, is not exactly known yet. It has been shown that several downstream targets are activated upon induction of iFGFR1 including RSK, the PI3K-Akt-, and the MAPK-ERK-pathway56, 59, 60. In order to find out the initial target genes of these pathways after activation of iFGFR1, mammary tissue of induced iFGFR1 mice was analyzed at early time points (from 0 to 24 hours), around which lateral budding starts. Microarray analysis revealed several genes whose expression was altered at any time point compared to non-treated transgenic mice. Most of these genes (88%) are already upregulated after 8 hours, indicating that these genes are directly regulated by FGFR1. The function of several clusters of genes, whose expression is changed upon induction of iFGFR1, is linked to tumor formation. These tumorigenic processes include angiogenesis, cell cycle regulation, chemotaxis, and the response to inflammation61. Inflammation in breast cancer has been linked to a more invasive phenotype and poor prognosis62. When investigating the infiltration of immune cells into the induced iFGFR1 mammary epithelium, it became apparent that the number of macrophages was strongly increased. This is a consequence of the increased expression of osteopontin, a macrophage chemoattractant, by the epithelial cells after activation of iFGFR1. These macrophages have been shown to be required for the formation of the lateral buds and to be involved in the formation of small blood vessels in the induced iFGFR1 mice61. These processes following the presence of macrophages are mediated by the production of IL-1β63. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 17 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl In conclusion, iFGFR1 induction results in the formation of multicellular invasive lesions according to the model that is presented in figure 2. This is not only accomplished by increased proliferation, inhibition of anoikis, loss of cell polarity, and EMT, but also includes remodeling of the ECM and stroma, the induction of angiogenesis, and the attraction of macrophages. This implies that overactivation of FGFR1 does not only affect the characteristics of the epithelial cells, but also interacts with the microenvironment. Even though the genetic aberrations in FGFR1 found in patients are not the same as the induction of FGFR1 signaling in iFGFR1 transgenic mice, this model can still be very useful. It can provide more insight into the molecular mechanisms by which FGFR1 contributes to the progression of the tumor, resulting in a worse prognosis in patients harboring FGFR1 amplifications. It has to be taken into account that breast cancer patients harbor additional genetic aberrations that could interact with FGFR1 signaling, making the model a less good representation of the human situation. An indication for interacting pathways comes from the MMTV-Wnt1 mouse model. Crossing this mouse model with iFGFR1 transgenic mice and subsequent activation of iFGFR1 dramatically increases and accelerates tumor formation, suggesting an interaction between FGFR1 and Wnt signaling64. Crossing the iFGFR1 transgenic mice with other breast cancer mouse models could provide more insight into the interaction of iFGFR1 signaling with other oncogenic pathways. Finally, the interaction of FGFR1 signaling with aberrant signaling in other pathways might even be necessary for the invasive carcinomas to metastasize. A possible way to find out whether overactive FGFR1 signaling is sufficient to form malignant carcinomas that are capable of metastasizing, prolonged administration of AP20187 to iFGFR1 transgenic mice could be tested. Cell lines harboring FGFR1 amplifications as an in vitro model To simulate the FGFR1 amplification found in breast cancer patients more accurately, cell lines having endogenous amplifications and subsequent overexpression of the FGFR1 gene are used: MDA-MB-134, CAL120, JIMT-1, MFM223, S68 and SUM4431, and CMA, MDA-MB-361 and HCC3865. Induction of FGFR1 signaling in these cell lines using a small amount of Fgf2 resulted in downstream activation of multiple pathways, including Frs2, Erk1/2, and RSK phosphorylation, whereas this was not observed in control cell lines31. Furthermore, overexpression of FGFR1 induces a basal level of downstream signaling without the presence of a ligand31. Finally, cells harboring FGFR1 amplifications seem to have an oncogenic addiction to FGFR1 signaling. This can be seen by the impaired proliferation of MDA-MB-134 cells, but not of cell lines without FGFR1 amplification, upon inhibition of FGFR1 signaling via administration of either FGFR1-siRNA or an FGFR inhibitor (SU5402)66. Furthermore, FGFR1 amplified cell lines were resistant to treatment with 4-hydroxytamoxifen (4OHT), one of the drugs used as an endocrine therapy. Additionally, inhibition of FGFR1 by siRNA increased their sensitivity to this treatment. The initial resistance of the cells to 4-OHT is mediated by activation of the MAPK-pathway leading to the expression of Cyclin D1 and a subsequent increased Sphase fraction. These results suggest that amplification of FGFR1 is involved in resistance to endocrine therapy. This is supported by the observation that amplification of FGFR1 is associated with a poor prognosis in ER+ patients that were treated with tamoxifen as an adjuvant endocrine therapy31. FGFR2 Effects of FGFR2 amplifications in vitro The amplification of FGFR2 found in breast cancer patients is also observed in several breast cancer cell lines, making it possible to elucidate the effects of FGFR2 amplification in vitro. Two cell lines containing amplifications and increased expression levels of the FGFR2 gene are the triple negative lines SUM52PE and MFM223. Both cell lines depend on FGFR2 signaling for survival, indicated by a significant decrease in survival upon inhibition of FGFR2 compared to cell lines without FGFR2 amplification. This addiction to FGFR2 is mediated by the activation of the PI3K-Akt signaling pathway FGFRs in breast cancer: expression, downstream effects, and possible drug targets 18 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl that results in inhibition of apoptosis33. Furthermore, downstream targets of FGFR signaling like Frs2, Akt and Erk, are activated in serum starved conditions and inactivated when an inhibitor of FGFR’s (PD173074) is added. This indicates that the phosphorylation of these targets occurs independent of ligand-binding, but is dependent on FGFR-kinase activity33. Whether this is also the case in patients harboring FGFR2 amplifications should be elucidated in order to identify therapeutic targets, which will be further discussed in chapter 4. Signaling effects of SNPs in intron 2 of FGFR2 As stated in the second chapter, a haplotype block of 8 SNPs in intron 2 of FGFR2 was strongly linked to an increased risk of breast cancer (Figure 3). This could be due to an altered binding capacity of transcription factors resulting in changed expression of FGFR2. Indeed a number of the 8 SNPs forming the minor disease-predisposing allele are in the vicinity of transcription factor binding sites: rs35054928 and rs2981578 are located next to an Oct-binding site, while the risk allele of rs2981578 also creates a binding site for Runx. Furthermore, the risk allele of rs10736303 creates a binding site for ER and the common allele of rs7895676 is part of a binding site for C/EBP-β67 (Figure 3). Figure 3: Genetic linkage of the FGFR2 gene (HapMap) The 8 SNPs most strongly associated with breast cancer risk which are in strong linkage disequilibrium and form the minor disease-predisposing allele. The two alleles shown in green have differential binding affinities for transcription factors (blue). Adapted from Meyer et al.39 Only two of these SNPs show different protein-binding affinities compared to the common allele39. The common allele of rs7895676 displays a stronger binding to C/EBP-β, compared to the minor allele. At the same time, rs2981578 showed equal affinity for Oct-1, but a much higher affinity for Runx2 by the minor allele39. This difference in affinity is thought to be affected by differences in H3/H4 acetylation of the SNP sites68. Overall, these differences in binding affinity result in a higher expression of FGFR2 in cell lines carrying the minor haplotype. This is in accordance with the increased expression levels of FGFR2 in breast cancer samples that were homozygous for the minor alleles39. FGFR4 The role of FGFR4 overexpression in a poor prognosis As stated in the second chapter, the poor response to chemotherapy is associated with overexpression of FGFR448. This is recapitulated in several breast cancer cell lines showing increased expression of FGFR4 in case of resistance to doxorubicin and cyclophosphamide69. FGFR4 contributes to this resistance by activating anti-apoptotic signaling via activation of MAPK and subsequent increase the Bcl-xl levels69. In accordance with this, inhibition of FGFR4 led to a reduction of ERKphosphorylation and decreased levels of Bcl-xl, ultimately leading to increased sensitivity of the cells to chemotherapeutic drugs69. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 19 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl FGFR4-Arg388 as a marker of poor prognosis: possible underlying mechanisms The SNP in FGFR4 identified in patients by Bange et al.16 results in the substitution of a glycine residue, being a neutral amino acid, into the hydrophilic amino acid arginine in the transmembrane region of FGFR4. This affects the structure and could alter the regulation of the receptor activity. However, so far, no sign of enhanced tyrosine kinase activity was found in breast cancer cells expressing the Arg388 allele16. This suggests that a different mechanism must be involved in the effect of the Arg388 allele on decreased patient survival16, 53, and resistance to chemotherapy53. To identify this mechanism, MDA-MB-231 cells, a breast cancer cell line lacking endogenous FGFR4, was transfected with the Gly388 or Arg388 allele. With these cell lines, no difference in proliferation was found. The Gly388-expressing cells however, were less invasive compared to the control and Arg388expressing cells70. This indicates that the Gly388 allele protects patients from tumor invasion which is in accordance with a better prognosis16. For this protective effect, the kinase domain was essential70, suggesting that downstream signaling plays an important role. Gene expression analysis revealed a differential regulation of several genes including upregulation of the LPA receptor gene Edg-2 in Arg388-expressing cells. Edg-2 induces cell movement by activation of PI3 and Akt upon binding of the ligand LPA, explaining the increased cell motility in the cells expressing Arg388. The observed upregulation of MMP-1 in the Arg388-expressing cells possibly contribute to an increase of the invasion capacities of the cells as a result of increased degradation of the ECM. Finally, Pai-1 is downregulated in cells expressing the Arg388 allele70. This gene has been shown to downregulate uPA resulting in a decrease in migration and invasion. In addition, upregulation of uPA sensitizes the Arg388-expressing cells to apoptosis induced by chemotherapy71. All of these (indirect) downstream targets of the Arg388 allele possibly increases tumor invasion and decreases sensitivity to chemotherapy, explaining the worse prognosis of Arg388 carriers and the prognostic value of this allele for failure of adjuvant chemotherapy. The decreased invasion capacities but unchanged proliferative capacity of Gly388 transfected breast cancer cells is also observed in the WAP-TGFα breast cancer mouse model in which either the Arg385 or Gly385 allele (the mouse equivalents of the human 388 alleles) was knocked-in: the tumors of the mice carrying the Arg385 allele were more invasive than in their Gly385 littermates due to increased migration. This promotion of tumor invasion by Arg385 however, depends on the oncogenes that drive tumor formation since no difference could be identified in a breast cancer mouse model having the constitutive activation of Src as the trigger of malignant transformation. This observation is supported by in vitro experiments testing the influence of the FGFR4-388-alleles in different oncogenic backgrounds72. These differences in oncogenes can very well be an explanation for the contradictory results about the influence of the Arg388 allele on patients’ prognosis (Chapter 2). In addition to increased invasion, WAP-TGFα mice carrying the Arg385 allele also suffer from fast forming metastases in the lungs and an increase of growth of these metastatic tumors, compared to the metastatic tumors in Gly385-expressing WAP-TGF α mice. Based on RT-PCR, several genes that could have a function in faster tumor progression and metastasis have been identified to be differentially expressed in the Gly385 and Arg385-expressing mice72. For example, p21 is downregulated in Arg385 tumor samples and since p21 acts as a tumor suppressor this could contribute to a more aggressive tumor progression. One of the upregulated genes in Arg385 tumors is CDK1, which is associated with migration. The expression of Flk-1, CD44, and MMP-13 and -14 is also increased in Arg385 tumors. These genes are all involved in increased cell invasion72. The involvement of MMPs in Arg388-mediated tumor progression is also found in breast cancer patients: FGFR4-Arg388 is strongly co-expressed with MT1-MMP (membrane-type MMP)73. The Arg388 allele stabilizes the MT1MMP/FGFR4 complex, resulting in enhancement of both tyrosine kinase and proteolytic activity of FGFR4 and the MMP respectively74. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 20 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl Overall it can be said that for several genetic aberrations in FGFRs, the molecular mechanism influencing the characteristics of the tumor has been (partly) unraveled. However, since there is not much known about genetic aberrations in FGFR3 in breast cancer patients, no data on the involvement of FGFR3 in breast cancer on a molecular level have been obtained yet. Several experiments should still be performed in order to elucidate the exact role of FGFRs in breast cancer. The results of these future experiments and the results of experiments described above lead to the identification of possible drug targets. In addition, several model systems for each FGFR are mentioned in this chapter. Next to their usefulness in finding out the changes in signal transduction, these models can also be used to perform preclinical drug tests on. Chapter 4 will discuss several ways of interfering with the abnormal FGFR signaling, and the advances made in drugs targeting this abnormal signaling. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 21 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl CHAPTER 4: DRUGS IN DEVELOPMENT AND POTENTIAL DRUG TARGETS Based on the genetic aberrations in FGFRs identified in breast cancer patients and their consequences on a molecular level, several approaches can be used to target FGFR signaling. For this goal, three points of interference are possible: upstream, downstream, or the receptor itself. For each of these points, two levels of interference can be discriminated being either on expression level or on the functioning of the proteins. In vitro and in vivo results of drugs tested for each FGFR in breast cancer are discussed in the following sections, which are split up according to their point of interference. Upstream intervention Interference upstream of the receptor will have to be on the level of the ligand. As explained in chapter 3, cell lines with FGFR1 amplifications and overexpression of FGFR1 have a low activity of downstream signaling without the presence of a ligand. Addition of a ligand however, greatly induces the downstream activation, making interference of ligand binding a useful approach to inhibit the overactive FGFR1 signaling. One of the possible methods is by designing FGF ligand traps using the extracellular part of any of the FGFRs linked to the Fc region of human IgG17. In this way, FP-1039 was designed: a fusion protein existing of the extracellular domain of FGFR1 and the Fc region of IgG. FP1039 was shown to have antiangiogenic effects in vivo. Moreover, FP-1039 was able to block tumor formation of human breast tumor xenografts, depending on their expression of FGFs and FGFRs75. FP-1039 is currently being tested in a phase I clinical trial76. Furthermore, since the FGFRs have several ligands in common, not only FGFR1 activation but also activation of FGFR3 and FGFR4 is blocked by binding of FP-1039 to FGFs75, making it possible to also use FP-1039 for the treatment of ligand-dependent overactive FGFR3 or -4 signaling. A second method to interfere with the binding of the ligand is the use of peptide mimics. At present, agonistic peptide mimics have been designed for FGFR1c and FGFR2b77. However, in order to inhibit the overactive FGFR-signaling found in breast cancer, the design of antagonistic peptide mimics is necessary. Upon binding of these antagonists to the receptor downstream activation of the receptor will not take place, resulting in a diminished FGFR-signal. Just like the FGF ligand traps, these antagonistic peptide mimics could be an effective drug in patients harboring FGFR1 amplifications. Experiments in FGFR2-amplified cell lines have shown that downstream signaling in these cells takes place independent of ligand-binding33, suggesting that interference on the level of the ligand will not be an effective treatment for patients having FGFR2 amplifications. It is however not clear whether this ligand-independent induction of downstream signaling is only a low level of activation, and whether addition of a ligand strongly increases the downstream signal. If this would be the case, peptide mimics of FGFs acting as antagonist or FGF ligand traps could be beneficial for patients harboring FGFR2 amplifications. No experiments testing this hypothesis have been performed yet. Finally, also for patients overexpressing FGFR4 and their concomitant poor response to chemotherapy, the dependence on ligand binding to the receptor will have to be investigated before designing and testing antagonistic peptide mimics and/or ligand traps. FGF-receptor inhibition To target the FGF-receptors themselves, several methods can be used. First of all, numerous tyrosine kinase inhibitors (TKIs) targeting FGFRs have been developed. These small molecules compete with ATP to bind to the receptor resulting in reduced activity of the kinase domain17, 67. However, since the kinase domain of receptor tyrosine kinases are very similar, most TKIs are not specific for one FGFR and also inhibit the activity of Vegfrs and/or Pdgfrs, making them less potent inhibitors of FGFRs17. Brivanib alaninate is an example of a TKI targeting both FGFRs and VEGFRs. This drug is currently being tested in clinical trials including liver and colon cancer patients. Its effect on breast cancer has so far only been tested in vitro. It has been shown that cell lines having FGFR1 amplification and overexpression are more sensitive to the drug than non-amplified cell lines55, FGFRs in breast cancer: expression, downstream effects, and possible drug targets 22 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl suggesting that this drug could be effective in patients harboring FGFR1 amplifications. However, since brivanib alaninate is not specific for FGFR1, its effects on other receptor kinases and possible side effects remain to be tested. The downside of using TKIs that target multiple tyrosine kinase receptors is that it can lead to many side effects, making it very important to develop FGFR-specific TKIs. So far only PD173074 and SU5402 have been designed as FGFR-specific TKIs17. Both compounds have not been tested in clinical trials of breast cancer patients yet17, and since these FGFR-inhibitors are not specific for one of the FGF-receptors, side effects cannot be ruled out. SU5402 has been tested on several breast cancer cell lines having different FGFR1 copy numbers. Interestingly, administration of SU5402 resulted in decreased proliferation exclusively in cell lines having FGFR1 amplification and overexpression. Therefore, SU5402 might be a promising drug for patients having FGFR1 amplifications and overexpression31, 66. As stated in chapter 3, MDA-MB-134 cells depend on FGFR1 for their survival and inhibition of FGFR1 by siRNA or SU5402 treatment reduces their proliferation66. A different MDA-MB134 cell line however was found to be insensitive for siRNA treatment. This was found to be the result of a KRAS mutation which was absent in the first cell line31. This indicates that the genetic background plays a role in the effect of FGFR1 inhibition. Since breast cancer tumors also have different oncogenic backgrounds, the response to FGFR1 inhibition can differ between patients. Further in vitro and in vivo studies will have to be performed in order to identify the subgroup of patients within the patient group harboring FGFR1 amplification and overexpression to be sensitive for SU5402, or for possible other drugs targeting FGFR1 or downstream targets. The effect of PD173074 has been tested in triple negative cell lines. Administration of this TKI turned out to be much more effective in cells harboring FGFR2 amplification and overexpression compared to control cell lines33.Therefore, inhibition of FGFR2 signaling by TKIs might also be beneficial in the treatment of triple negative breast cancer patients harboring FGFR2 amplifications and overexpression. To elucidate if this is the case, several in vitro and in vivo experiments will have to be performed using different TKIs. In addition, the effect of PD173074 could be tested in cell lines having amplifications of other FGFRs. In order to circumvent the side effects of unspecific TKIs, monoclonal antibodies can be a good solution. For FGFR1-IIIc and FGFR3 an antibody has already been made, but these have not been tested in any breast cancer model yet17. For FGFR4 an antibody has been developed (10F10) and tested in cell lines naturally expressing FGFR4 at a high level. The administration of 10F10 strongly increased their sensitivity to doxorubicin treatment69, suggesting that the use of this antibody could also be beneficial for patients overexpressing FGFR4 in order to increase their response to chemotherapy. Another highly specific way to target the FGFRs is by RNA aptamers. These short RNA oligonucleotides are selected for their high affinity and specificity to bind to the target proteins, thereby acting as a synthetic antibody78. Currently, RNA aptamers that target the FGFR2 kinase domain, the FRS2 interacting domain or the extracellular domain of FGFR2 are being developed. Their effectiveness remains to be tested67. The TKIs and (synthetic) antibodies described above are all aimed at the inhibition of the functioning of the FGFRs. But also the expression of the receptors can be altered in several ways, for example by the use of siRNA or miRNA. These therapeutic strategies are however still in a very early stage in which off-target effects and the delivery of these molecules to the tumor are still under investigation67. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 23 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl Downstream drug targets To target downstream signal molecules of FGFRs it is very important to identify the key pathway players that lead to the addiction of tumor cells to FGFR-signaling. For several genetic aberrations found in FGFRs in patients the molecular implications are already extensively studied, but many molecular mechanisms remain to be investigated. If these molecular implications are unraveled, the ways to inhibit or enhance the expression or function of these proteins are almost unlimited, using any of the techniques described above. It is however very important to bear in mind that many of the proteins that are involved in aberrant FGFR signaling also play a role in other signaling pathways, and in healthy cells. This makes it very difficult to target these proteins without having many side effects. Targeting of downstream targets of FGFR1 as a monotherapy or as an additional therapy could be very effective as indicated by several studies inhibiting downstream targets. One of these proposed drug targets is RSK60. In iFGFR1 transfected MCF10A cells, inhibition of RSK by administration of CMK, an irreversible small molecule inhibitor specific for RSK79, reduced the proliferation and re-induced anoikis of cells in which iFGFR1 was activated by exposure to AP2018760. Administration of CMK also reduced the proliferation MDA-MB-134 cells, a mouse lobular carcinoma cell line overexpressing FGFR1, whereas administration of CMK to breast cancer cell lines lacking FGFR1 amplification did not affect their proliferation. Overall, RSK seems to be a good drug target in patients having FGFR1 amplification and overexpression, especially since CMK only exerts its inhibitory effect on cells overexpressing FGFR1, but not on wildtype cells. In addition to CMK, several other drugs are available to target different domains of RSK60. Further in vivo studies will have to be performed to analyze the effectiveness of these RSK-inhibitors and whether RSK-inhibitors can be used in all types of breast cancers having FGFR1 amplification and overexpression. MMPs could be another drug target downstream of FGFR1 signaling, since these have been shown to play a role in invasion and blood vessel formation 56, 59. Inhibition of MMP-3 in the 3D iFGFR1 HC11 model by treatment with a pan MMP inhibitor (GM6001) resulted in decreased invasion of the lesions which is mediated by the re-establishment of E-cadherin at cell-cell junctions. In addition, expression of the mesenchymal marker SMA was reduced after GM6001 treatment, suggesting that MMPs also play a role in EMT. Proliferation, apoptosis, and cell polarity however was not changed by addition of the MMP inhibitor59. This indicates that inhibition of MMP activity in patients will not be sufficient as a monotreatment. For patients having FGFR2 amplifications several downstream molecules have been identified as possible drug targets. Since FGFR2-amplified cell lines rely on FGFR2 signaling for their survival via the PI3K pathway inhibiting apoptosis, several molecules in this pathway could be possible drug targets. This idea is supported by a study in FGFR2-amplified cell lines which pointed out that dual targeting of FGFR2 and downstream PI3-kinase was very effective and could be very useful in targeting FGFR2-amplified tumors33. In patients overexpressing FGFR4, one can consider targeting ERK, Bcl-xl and other players in this anti-apoptotic pathway. Since these proteins have been shown to mediate the resistance to chemotherapy in this group of patients, drugs targeting these proteins could increase the response rate of this group of patients. No studies in this field have been performed so far. As for patients harboring SNPs in the second intron of the FGFR2-gene, very little insight into the contribution of these SNPs to tumor progression has been obtained. Since the expression levels of FGFR2 are increased in patients carrying the disease-allele39, it would be reasonable that this leads to increased downstream signaling. This still remains to be investigated, but if this would be the case, several upstream, downstream and drugs targeting the receptor could be tested as therapeutic strategies for this group of patients. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 24 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl Finally, several drug targets can be suggested to treat patients with the FGFR4-Arg388 allele. This polymorphism does not result in increased tyrosine kinase activity16, making drugs interfering with the ligand binding or the activity of the receptor unsuitable for treating FGFR4-Arg388 breast cancer patients. Several downstream molecules have been identified to play a role in the increased migration capacity of Arg388 expressing cells. For example, Edg-2 expression is increased in cells transfected with the Arg388 allele, so inhibition of Edg-2 could be a possible way to inhibit the migration of Arg388 cells. Indeed, transfection of cells carrying the Arg388 FGFR4 allele with siRNA targeting Edg-2 significantly reduced their migration70, proving its function as a drug target. Since the inhibition of cell movement in Gly388 cells by decreased expression levels of Edg-2 is mediated by decreased PI3-kinase and Akt activity, PI3-K and Akt could also be possible drug targets. MMP-1 expression is also decreased in Gly388 expressing cells70 whereas MMP-13 and -14 are overexpressed in Arg385 mouse tumors72, making inhibitors of MMPs a possible way to inhibit migration of Arg388 expressing cells. Finally, since Cdk-1, Flk-1, and CD44 are upregulated in Arg385 mouse tumors, inhibition of either of these molecules could diminish the aggressive phenotype of these tumors. Again, it has to be noted that these proteins are involved in many processes. Therefore, the use of drugs targeting these proteins possibly results in many side effects. No studies regarding these drug targets have been performed yet. FGFRs in breast cancer: expression, downstream effects, and possible drug targets 25 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl CONCLUSION & DISCUSSION In the past decade several research areas have contributed to our understanding of the role of FGFRs in breast cancer. Depending on the type of receptor, different genetic aberrations have been identified in subgroups of breast cancer patients. Mutations have been identified in the FGFR2 and -4 genes in breast cancer patients. Mutations in the other two FGFR genes have not been linked to breast cancer. Mutations in FGFR3 are however present in other cancers and a similar mutation has been identified in a Saethre-Chotzen patient having breast cancer. Whether these mutations also have a role in breast cancer is to be investigated. The SNPs identified in intron 2 of FGFR2 have been shown to be associated with an increased breast cancer risk in several studies. It is however not exactly clear yet how these SNPs lead to this increased risk on a molecular level. Especially the role of ER in the minor disease-predisposing allele remains to be investigated. Clarifying this and other molecular implications of the FGFR2 allele will contribute to designing a possible drug for this group of patients. For the Gly388Arg polymorphism identified in the FGFR4 gene, some contradicting results regarding the involvement of the Arg388 allele in the prognosis and therapy resistance of breast cancer patients are described. To clarify this, large-scale studies are needed in which the clinical and pathological parameters are monitored closely. Next to mutations in the FGFRs, also the amplification of these genes has been studied in breast cancer patients. Many studies have been focusing on the amplification status of FGFR1 resulting in different percentages of patients harboring FGFR1 amplification. This can be contributed to the large variation of tumor samples, all having different clinical and pathological characteristics. For future screens trying to identify copy number variations in any gene in (breast) cancer patients, several important factors will have to be taken into account. First of all, the group of patients will have to be large to prevent rare amplification events from being overlooked. In addition, it is important to monitor the clinical and pathologic characteristics of the patients like disease progression, treatments, tumor size, stage and grade, molecular subtype, hormonal status, and other characteristics mentioned in the second chapter. All these factors are important in order to find out associations with the amplifications or losses, but also to be able to discard confounding factors. A second important parameter influencing the identification of copy number variations is the type of technique that is applied. Depending on the goal of the study, genome-wide or single-gene analysis of amplification and losses can be studied. Currently, several techniques are available to monitor the copy number variation on a very high resolution, and in a quantitative manner. The importance of a high resolution is illustrated by the amplification of the 8p11-12 region in which the FGFR1 region is located. At first, FGFR1 was thought to be the target oncogene of this region, but amplification of this region does not always lead to overexpression of FGFR1, suggesting that other oncogenes might be involved28, 30. Analysis of the genome and expression at a higher resolution led to the identification of four amplicon cores within the 8p11-12 region, with FGFR1 located in the second core80, proving that low-resolution techniques are not ideal to study the amplification of a single gene. Next to the highresolution techniques that are available it is also possible to combine techniques having a low resolution with expression data obtained by RNA-microarray analysis or qPCR. Using one of these possibilities will not only enable the amplification and overexpression on the level of single genes, but will hopefully also help to resolve the contradicting results about the association of FGFR1 amplification and overexpression with clinical and pathological parameters. As described in chapter 3, the next step after identifying genetic aberrations in the patients is to find out what the molecular mechanisms are by which these genetic aberrations contribute to the development, and progression of breast cancer, or to resistance to therapy. For FGFR1 an extensive model has been set up using an iFGFR1 construct that can be constitutively activated upon administration of a drug. It has to be noted that this model of overactive FGFR1 signaling is not FGFRs in breast cancer: expression, downstream effects, and possible drug targets 26 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl exactly the same as endogenous overactivity of FGFR1: natural FGFR1 contains several regulatory regions in the extracellular domain and the transmembrane domain, regulating the length, intensity and type of the downstream signals. Since the iFGFR1 lacks these domains, not only the membrane localization is altered, but the activation kinetics could also be altered56. It is however a useful method to identify the molecular pathways involved in tumorigenesis induced by FGFR1, which ultimately contributes to the identification of drugable proteins. For this reason, it would be a good idea to also make iFGFR constructs for the other FGFRs, in order to find out whether these exert the same effects on the mammary epithelium. Such a construct has already been made for FGFR2, and has been transfected into prostate cells. Interestingly, in contrast to the induced iFGFR1 construct in these cells, the activated iFGFR2 construct was not able to induce neoplasia in the prostate81. This suggests that FGFR1 is more oncogenic than FGFR2. However, whether this is also the case in mammary tissue and other organs remains to be investigated. Not only the iFGFR1 construct, but also the other genetic aberrations identified in breast cancer patients have been tested both in in vitro and in in vivo models. It is very important to realize that the in vitro models are easy to manipulate, but these models also have a disadvantage: they are unable to simulate the microenvironment including stromal cells, ECM, blood vessels, and the immune response. All of the in vivo models described in chapter 3 have shown that all of these factors play a major role in the development of breast cancer. The culture conditions of cell lines have shown to also play a role in their response to drug administration: several FGFR1 amplified cell lines were insensitive to siRNA treatment in a 2D culture, whereas a 3D culture of CAL120 cells did show dependence on FGFR-activity to avoid anoikis31. This highlights that it is always important to check not only the molecular effects of a genetic aberration but also the efficacy of a drug in an in vivo model. As already pointed out in chapter 3, the in vivo models are still not an exact representation of the situation in human breast cancer patients. Not only because mouse tissue is different from human tissue, but also because human breast cancer tissue harbors multiple oncogenic mutations which can interact with the altered FGFR signaling. Therefore, it is very useful to cross the mice harboring the genetic aberrations in one of the FGFRs with other breast cancer mouse models harboring mutations in oncogenes that frequently occur in breast cancer patients. Finally, this thesis has only focused on genetic aberrations in one single FGFR. It might also be possible that breast cancer patients harbor genetic aberrations in multiple FGFR genes. If this is the case, these multiple aberrations can also be introduced in in vitro and in vivo models in order to find out whether there exists an interaction or a combinatorial effect of multiple genetic aberrations in FGFRs. The ultimate goal of identifying genetic aberrations in FGFRs in patients, and of identifying their molecular implications is of course to identify drug targets. For the development of future drugs, several points will have to be taken into account. First of all it is important to know that these targeted drugs are never to be used as a monotreatment, but always in combination with surgery, radiation, or chemotherapy in order to destroy the malignant cells. Second of all, the targeted therapies will have to act very specifically in order to constrain the side effects. As can be read in chapter 1, FGFR signaling also plays an important role in healthy tissue, which emphasizes the importance of preferably only targeting the cancer cells and not healthy cells. Furthermore, as can be seen for TKIs, it is difficult to design drugs that target only one specific protein. The use of monoclonal antibodies might therefore be a better alternative. Unfortunately however, as could be seen for Herceptin, a monoclonal antibody targeting Her2, these highly specific drugs often result in the development of drug resistance. The reasons for this resistance are very diverse: there can be mutations present downstream of the Her2 receptor, there is an increase in signaling of other receptors that have the same downstream targets, or mutations can be present in the extracellular domain of Her2 resulting in a less stable interaction with the drug15. These ways to circumvent the action of a drug can potentially also take place in patients having genetic aberrations in FGFRs. For FGFRs in breast cancer: expression, downstream effects, and possible drug targets 27 Milou Tenhagen, Master Thesis, December 2010 3158136, M.Tenhagen@students.uu.nl the first problem, downstream mutations, it is important to also design drugs for proteins downstream of these mutations. Secondly, in order to prevent other receptors from taking over, it has been suggested that it is better to design drugs that target multiple RTKs at the same time, in order to inhibit multiple pathways82. 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