Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Chantal van Es Student number: 3382222 Research Internship Master Companion Animal Medicine Supervisors Drs. Deborah van Doorn, Universiteit Utrecht Dr. Karin Orsel, University of Calgary Jillian Steele, BSc, University of Calgary Calgary, June 8th 2012 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Index Summary…………………………………………………………………………………………………….3 Introduction………………………………………………………………………………………………. 4 Materials & Methods……………………………………………………………………………….. 6 Results……………………………………………………………………………………………… ………..8 Discussion………………………………………………………………………………………………….. 11 Acknowledgments…………………………………………………………………………………….. 13 References………………………………………………………………………………………………….14 Appendices………………………………………………………………………………………………. 17 Research Internship University of Utrecht Page 2 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Summary The aim of this study was to determine whether there is a relation between gastrointestinal parasite diversity and climate in west Greenland. Two different caribou herds from two different areas, the Kangerlussuaq-Sisimut (KS) area and the Akia-Maniitsoq (AM) area, were sampled and their gastrointestinal nematodes were identified. Weather data on temperature, precipitation and wind speed was obtained from the online database of the Danish Meteorological Institute and the climate preferences of these nematodes, obtained from literature, were compared with the climate data of the areas. These climate data show a continental climate in the KS area and a maritime climate in the AM area. Our results show that parasites in western Greenland are distributed following their preferred climatological factors. It, unfortunately, was not possible to say that parasite distribution in this region is primarily influenced by climate, because there are many other factors and weather conditions to take in consideration. Research Internship University of Utrecht Page 3 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Introduction In Greenland, people partly depend on caribou for food and other economic aspects (Albon, 2002). Caribou health and survival are affected by multiple factors, which include the presence of parasites (Cuyler, 1999). Gastrointestinal parasites are negatively related to body condition, reproduction and survival (Albon, 2002). Habitat and environment influence parasite distribution in many ways. Human-mediated effects, such as environmental disruption, can lead hosts to contact new parasites or change migratory patterns, which used to prevent, or decrease, infection with seasonal parasites (Stromberg, 1997). One of the most important factors for development, survival and distribution of the free-living stages of gastrointestinal nematodes are the weather conditions (Stromberg, 1997). Parasites with free-living stages in the environment are likely to be affected by even the smallest differences in temperature and precipitation (Kutz, 2012). The two largest caribou herds in Greenland are believed to originate from the same ancestors (Flagstad, 2003), but previous genetic research shows minimal gene transfer between these herds (Jepsen, 2002). The herds are separated from each other by the Greenland ice cap, and have dealt with different circumstances. Besides contact with different animals, the herds also have different climates. The two areas are separated from each other by the Greenland ice cap, causing a difference in air pressure (Cuyler 2010, Tamstorf 2005). The KS area has a continental climate caused by a high pressure system and it is characterized by more extreme temperatures, less precipitation, and less wind than the AM area (Tamstorf 2005, Cuyler 2005b, Tamstorf 2004). The AM area, which lies in a low pressure system, is characterized by a more maritime climate with temperate temperatures, higher levels of precipitation, and more wind (Tamstorf 2004, Cuyler 2005b, Tamstorf 2005 ). The most common gastrointestinal nematodes of caribou are Ostertagia spp., Teladorsagia spp. and Marshallagia spp. (Kutz, 2012), although caribou may also host parasites of muskoxen, sheep, cattle and horses which are brought into contact with - (Norlund, 1936). These common parasites are all members of the family Trichostrongylidae. They have the same basic life cycle, but show variability in their sensitivity to environmental factors(Stien, 2002). Eggs are passed in the feces and, time dependent on environmental factors, such as temperature and moisture conditions, develop to the infective third stage larvae (L3) during summer. With the right moisture levels, the L5 will migrate from the feces on to the herbage and be ingested during normal grazing behavior. After ingestion by a compatible ungulate host species, the L5 becomes sexually mature in the abomasum (Taylor, 2007).The free living stages on the pasture are especially dependent on environmental conditions. Developmental steps, such as hatching, larval development, and migration appear to depend on weather conditions, such as temperature, moisture, and winds, although many others may play roles (Stromberg, 1997). The current global situation shows a shift in climates around the world (Lafferty, 2009),which is expected to be a major factor in changing endemic parasite faunas (Poulin, 2006). In what direction the changes will go, is only guesswork at this moment, as it is possible that the geographical range of some generalist parasites will expand, that previously unimportant pathogens will emerge as destructive, or that some parasites will extinct by direct effects of higher temperatures on the developmental rates and transmission, or by effects of climate on their hosts (Poulin, 2006). Before we can begin to understand the directions of these changes, we must first accumulate knowledge of how current climate systems effect parasite distribution, so we may begin to understand how this may change in the future. The research I undertook will begin to fill this knowledge gap, as investigated the relationship between gastrointestinal parasite diversity and climate in western Greenland. For this I examined Research Internship University of Utrecht Page 4 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou what our current status of knowledge is regarding caribou gastrointestinal parasites and their climatic preferences, and then examined the situation in west Greenland to see if the parasites in those regions could be found were we would expect them Research Internship University of Utrecht Page 5 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Materials & Methods This research is a part of a larger project on parasites of caribou in West-Greenland (Cuyler 2012; Steele, 2011). Study Area In the springs of 2008 and 2009 caribou were sampled from two areas in West Greenland. The caribou collected in March-April 2008 were from the southern herd of AM and in March 2009 from the northern herd of KS. Fig 1. Locations of the two largest West Greenland caribou populations, Kangerlussuaq-Sisimiut and Akia-Maniitsoq (Cuyler, 2010). Weather Conditions There are many weather conditions which should be taken in consideration in regards to parasite transmission and survival (Pandey, 1972). This paper reports monthly minimum and maximum temperature, mean monthly temperature, mean monthly precipitation and mean monthly wind speed. Temperature and precipitation are known for their important influence on parasite development and survival (Taylor, 2007). The free-living stages are especially dependent on temperature for their development and survival on the pasture (Stromberg, 1997). Moisture is also important for development and survival, but plays a crucial role in allowing their movement from fecal material to the herbage (Stromberg, 1997). Wind speed has influences on temperature and precipitation and is therefore an important factor influencing parasite transmission and survival, and in our understanding of these other features of climate (Ollerenshaw, 1969).The temperature is influenced by wind chill; wind can increase or decrease the temperature. Also, wind influences the amount of precipitation; wind brings precipitation or keeps it away (Ollerenshaw, 1969). Research Internship University of Utrecht Page 6 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou All data was obtained from the online database of the Danish Meteorological Institute (DMI 2012). The weather stations were located at Nuuk in the AM area and at Kangerlussuaq in the KS area. These stations were selected for this work because they were the closest to the locations of sampling. Because the found nematodes are all of the Trichostrongylidae family, the free-living stages are on the pasture around the same period. The eggs are deposited on the pasture in the beginning of summer, develop during the rest of summer and the most of L3 is ingested at the end of summer (Taylor, 2007). However, the presence of parasites depends on weather conditions during its whole life cycle, so in this report we selected a time-frame from the previous summer till the sample date of the herds for the climate analysis. This means for the AM herd a time-frame from June 2007 up to the end of April 2008 and for the KS herd we examined a time-frame from June 2008 up to the end of March 2009. Study Animals Adult caribou were selected through convenience sampling, shot and examined as per CARMA protocols (Gunn & Nixon, 2008). For our analysis we used the data collected from the 76 adult animals; 41 animals from AM and 35 animals from KS. For these animals, the gastrointestinal tracts were removed at death, frozen and then processed according to protocol following thawing (Appendix 1). The abomasal washes were preserved in 70% ethanol or 10% formalin and transported to the University of Calgary. They were analyzed following an in lab protocol (Appendix 2), and the nematodes found were placed in cryovials and stored at -80 °C. These steps were already done prior to my involvement with the project. Parasites Identification of adult male nematodes was done morphologically following an in-lab key, focusing on; body length, bursa pattern, spicules length and character, esophageal valve length and width and synlophe pattern (Appendix 3). The key was developed for arctic nematodes species and those species which could have been present due to the introduction of domestic species; nevertheless, other species were not excluded from our search and were included in the analysis if identified. Nematodes were cleared and mounted from compound microscopy using lactophenol. For the AM samples reserved in 70% ethanol with more than 50 male nematodes, only 50 randomly selected nematodes were mounted. The rest of the nematodes were reserved for molecular identification later in the project. Of the samples kept in 10% formalin, all the male nematodes were identified using microscopy as these samples aren’t ideal for DNA extraction techniques. Research Internship University of Utrecht Page 7 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Results Climate Data Nematodes depend on climate during the whole life cycle, so I looked at the weather data of the year before the sample date. If the weather was atypical for the known climates of these areas, I would also look at other years, but, fortunately, the weather was typical for these areas. Temperature The KS area (Table 1) had extremer temperatures in comparison with the AM area (Table 2). The KS area had a relatively cold winter and a warm summer, while the AM area had a relatively mild winter and a mild summer. Mean temperature Minimum Maximum (°C) temperature (°C) temperature (°C) June 2008 11.0 4.1 16.6 July 11.8 4.8 17.7 August 8.0 2.9 13.0 September 3.1 -0.8 6.7 October -4.7 -9.0 -0.6 November -9.6 -13.6 -5.0 December -14.9 -19.5 -9.8 January 2009 -15.7 -20.6 -10.6 February -14.3 -19.6 -9.3 March -20.2 -26.4 -13.7 Table 1. Monthly maximum and minimum temperature and monthly mean temperature (°C) in Kangerlussuaq-Sisimut Mean temperature Minimum Maximum (°C) temperature (°C) temperature (°C) June 2007 5.7 2.9 9.4 July 8.5 5.1 12.5 August 9.2 6.5 13.0 September 3.5 1.3 6.3 October -0.6 -3.2 2.3 November -3.2 -6.0 -0.4 December -8.3 -10.9 -6.0 January 2008 -11.1 -13.5 -8.6 February -12.5 -15.0 -9.4 March -8.2 -11.2 -4.8 April -1.3 -4.2 2.2 Table 2. Monthly maximum and minimum temperature and monthly mean temperature (°C) in AkiaManiitsoq Research Internship University of Utrecht Page 8 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Precipitation In both areas fell more precipitation in summer than in winter (Table 3). The KS area is more dry than the AM area, which had relatively a large amount of precipitation. Mean precipitation (mm) KS 2008-2009 AM 2007-2008 June July August September 6 10 55 42 53 132 105 116 October November 17 18 27 111 December 8 60 January February 6 2 47 56 March 2 76 April N/A 14 Table 3. Monthly mean precipitation (mm) in Kangerlussuaq-Sisimut and in Akia-Maniitsoq Wind speed The KS area has relatively low wind speeds in comparison to the AM area. In both areas there is no clear difference between the seasons. Mean wind speed (m/s) KS 2008-2009 AM 2007-2008 June 6 6 July 5 5 August 3 6 September 3 8 October 4 7 November 4 11 December 5 6 January 4 5 February 3 8 March 3 7 April N/A 5 Table 4. Monthly mean wind speed (m/s) in Kangerlussuaq-Sisimut and in Akia-Maniitsoq Research Internship University of Utrecht Page 9 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Climate Summary The weather conditions seen in Nuuk in 2007 and 2008 and in Kangerlussuaq in 2008 and 2009, follow the expected climate patterns for those regions. The AM area has a maritime climate, which is temperate, and therefore on average more moderate and with higher levels of precipitation and winds than KS. The KS area has a continental climate, which has more extreme temperatures, hotter summers and colder winters, along with less precipitation and wind. (Tamstorf 2004, Cuyler 2005b, Tamstorf 2005) Parasites Samples from the AM herd were positive solely for Ostertagia gruehneri. KS samples, in contrast, were positive for Teladorsagia spp. and Marshallagia marshalli. It was not possible to make a difference between the Teladorsagia species under the microscope, so we consider that both T. circumcincta and T. boreoarcticus are possible candidate species. The preferential climate conditions from literature of these nematodes are cool, moist weather for Ostertagia gruehneri and dry weather for Teladorsagia spp. and Marshallagia marshalli (Hoar 2012, Nabavi 20110). According to the literature Teladorsagia spp. and Marshallagia marshalli prefer higher temperatures, but they are also found in other Arctic regions, so they can survive in west Greenland (Popiolek 2007). Research Internship University of Utrecht Page 10 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Discussion In western Greenland parasites appear distributed following their preferred climatological factors. This was already suggested in previous researches (Halvorsen, 1999, Korsholm, 1991, Stromberg, 1997), but our results confirm this and that parasite distribution follows expected known “preferences” in regards to temperature, precipitation and wind speed. The preferential climate conditions from literature of these nematodes are cool, moist weather for Ostertagia gruehneri and dry weather for Teladorsagia spp. and Marshallagia marshalli (Hoar 2012, Nabavi 20110). According to the literature Teladorsagia spp. and Marshallagia marshalli prefer higher temperatures, but they are also found in other Arctic regions, so they can survive in west Greenland (Popiolek, 2007). Challenges Parasite distribution in this region may be influenced by climate, but we can’t say for sure because there are many other factors to take in consideration. The nematodes identified in these herds are generalist species and there is no reason based solely on climate that would stop them from being able to survive, although perhaps not thrive (Levine, 1963, Taylor, 2007). This means there could be other reasons for the current distribution of parasite species. The Akia-Maniitsoq (AM) and the Kangerlussuaq-Sisimut (KS) herds have had different contact with other species over the years. The AM area was colonized by vikings and used for agriculture, which, most likely, brought the caribou into contact with domestic cattle, sheep, goats and horses (Norlund, 1936). More recently, there was also an introduction of semi-domesticated Norwegian reindeer to supplement the numbers of animals in the caribou herd (Cuyler, 1999). The KS area has not been used for agriculture, but the caribou have been in contact with other ungulate species too. To make hunting more accessible muskoxen were introduced to the area in 1962 and have spread across the majority of the caribou range (Clausen, 1993). Because the herds are isolated from each other, parasite transfer between the herds is unlikely. So parasites which may have been introduced along with domestic ungulates into one herd, may not be able to transfer to the other. Of course, it is a possibility that a combination of climate, isolation and different contact with other species lead to the current distribution of the nematodes. Future Steps For further research it is necessary to have more information about the development of the parasites, such as growth rate information, the exact time required at each stage for develop and how long the free-living stages need to stay on the pasture. Also it is useful to know exactly how the nematodes depend on environmental conditions, so these can be taken into consideration. Also, it would be useful to have more information about the climate of Greenland. Survival and transmission of nematodes depend on a whole range of weather conditions (Pandey, 1972). If you have more detailed information on the conditions used in this project, it would be possible to look at day-by-day data instead of monthly means. This is useful, because even little differences in weather between the days could make big differences for parasite transmission and survival. It would also be better to have more information about other weather conditions, such as snowfall and, because many weather conditions have an influence on parasite transmission and survival and should be taken in analysis. Also, it could be useful to be critical about the samples and techniques used in this project. It may be useful to have more samples, so you have more evidence. But in this project, it does not have to be necessary to have more samples, because I would not expect to find other nematodes in these herds. Research Internship University of Utrecht Page 11 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou The key used for identification could also be discussed. It may be possible to make a clearer differentiation between the species. Research Internship University of Utrecht Page 12 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Acknowledgements I want to thank Deborah van Doorn for her assistance and for giving me the opportunity to fulfill my research project on the subject of parasitology. I really got a nice opportunity to see how the work in this field looks like. I want to thank Dr. Karin Orsel and Jillian Steele from University of Calgary for the opportunity to do my research project at their university. Their effort to make this project a success made it very instructive to me. Their hospitality was great and therefore I had a very nice time working and living in Calgary. Research Internship University of Utrecht Page 13 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou References Albon, S.D. (2002) The role of parasites in the dynamic of a reindeer population. Proceedings: Biological Sciences, 269, 1625-1632 Ball, M.C., Lankester, M.W., Mahoney, S.P. (2001) Factors affecting the distribution and transmission of Elaphostrongylus rangiferi (Protostrongylidae) in caribou (Rangifer tarandus caribou) of Newfoundland, Canada. Canadian Journal of Zoology, 79, 1265-1277. Clausen, B. (1993). Translocation of Muskox (Ovibos moschatus): A long term utilization of renewable resources in Greenland. Dansk Veterinaertidsskrift, 76(7), 269-280. Cuyler, C. (1999). Success and failure of reindeer herding in Greenland. Rangifer, 3, 81-92. Cuyler, C., Østergaard, J.B. (2005a). Fertility in two West Greenland caribou Rangifer tarandus groenlandicus populations during 1996/97: potential for rapid growth. Wildlife Biology, 11(3), 221227. Cuyler, C., Rosing, M., Egede, J., Heinrich, R., Mølgaard, H. (2005b). Status of two West Greenland caribou populations 2005. Technical Report of Greenland Institute of Natural Resources, 61. Cuyler, C., Rosing, M., Mølgaard, H., Heinrich, R., Raundrup, K. (2010). Status of two West Greenland caribou populations 2010. Technical Report of Greenland Institute of Natural Resources, 78. Cuyler, C., White, R., Lewis, K., Soulliere, C., Gunn, A., Russell, D., & Daniel, C. (2012) Are warbles and bots related to reproductive status in west Greenland caribou? Rangifer Special Issue, 20, 245257. Danish Meteorological Institute. 2011. Klimanormaler for Grønland., http://www.dmi.dk/dmi/index/gronland/klimanormaler-gl.htm. Retrived Oct. 4, 2011 Donald, A.D. (1968) Ecology of the free-living stages of nematode parasites of sheep. Australian Veterinary Journal, 44, 139-144. Flagstad, O. and Roed, K. H. (2003). Refugial origins of reindeer (Rangifer tarandus L.) inferred from mitochondrial DNA sequences. Evolution, 57(3), 658-670. Gunn, A. and Nixon, W. (2008). Rangifer health and body condition monitoring: Monitoring protocols level 2. (ed. Network, C. R. M. a. A. C.) Halvorsen, O. (1999) Parasites, biodiversity, and populations dynamics in an ecosystem in the high arctic. Veterinary Parasitology, 84, 205-227. Hoar, B.M., Ruckstuhl, K., Kutz, S. (2012) Development and availability of the free-living stages of Ostertagia gruehneri, an abomasal parasite of barrenground caribou (Rangifer tarandus groenlandices), on the Canadian tundra. Parasitology, 139, 1093-100. Research Internship University of Utrecht Page 14 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Jepsen, B. I., Siegismund, H. R. and Fredholm, M. (2002). Population genetics of the native caribou (Rangifer tarandus groenlandicus) and the semi-domestic reindeer (Rangifer tarandus tarandus) in Southwestern Greenland: Evidence of introgression. Conservation Genetics, 3(4), 401-409. Korsholm, H., Olesen, C.R. (1991) Preliminary investigations on the parasite burden and distribution of endoparasite species of muskox (Ovibos moschatus) and caribou (Rangifer tarandus groenlandicus) in West Greenland. Rangifer, 13, 185-189 Kutz, S.J., Hoberg, E.P., Polley, L., Jenkins, E.J. (2005) Global warming is changing the dynamics of Arctic host-parasite systems. Proceedings of the Royal Society B, 272, 2571-2576. Kutz, S.J. (2012) Advances in parasitology 1st ed, 113-165. Lafferty, K.D. (2009) Calling for an ecological approach to studying climate change and infectious diseases. Ecology, 90, 932-933. Levine, N.D. (1963) Weather, climate, and the bionomics of ruminant nematode larvae. Advances in Veterinary Science & Comparative Medicine, 19, 215-261. Nabavi, R., Eslami, A., Shokrani, H.R. (2011) Study on the prevalence, intensity, seasonal dynamics of abomasal helminths in sheep from different climatic zones of Iran. World Applied Sciences Journal, 12, 441-445. Norlund, P. (1936). Viking settlers in Greenland and their descendants during five hundred years, Cambridge University Press, London. Ollerenshaw, C.B., Smith, L.P. (1969) Meteorological factors and forecasts of helminthic disease. Advances in Parasitology, 7, 283-323. Pandey, V.S. (1972) Effect of Temperature on development of the free-living stages of Ostertagia ostertagi. The Journal of Parasitology, 58, 1037-1041. Popiolek, M., Szczesna, J., Kotusz, J. (2007) The level of infection with gastro-intestinal nematodes in Svalbard reindeers from Hornsund area, Spitsbergen. Polish polar research, 28, 277-282. Poulin, R., Mouritsen, K.N. (2006) Climate change, parasitism and the structure of intertidal ecosystems. Journal for Helminthology, 80, 183-191. Stien, A., Irvine, R.J. (2002) The population dynamics of ostertagia gruehneri in reindeer: a model for the seasonal and intensity dependent variation in nematode fecundity. International journal for parasitology, 32, 991-996. Steele, J. (2011) Gastrointestinal parasites of West Greenland caribou. M.Sc. Researh Proposal. Stromberg, B.E. (1997) Environmental factors influencing transmission. Veterinary Parasitology, 72, 247-264. Tamstorf, M.P. (2004) Satellitbaseret vegetationskortlægning i Vestgrønland. Miljø- og Energiministeriet Danmarks Miljøundersøgelser, 2004 Research Internship University of Utrecht Page 15 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Tamstorf, M.P., Aastrup, P., Cyuler, C. (2005) Modeling critical caribou summer ranges in West Greenland. Polar Biology, 28, 714-724. Research Internship University of Utrecht Page 16 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Appendix 1 SOP for GI tract removal, wash, and fecal collection in field conditions 1. Procedure Title Method for GI tract removal, wash, and fecal collection in field conditions 2. Introduction This technique is used to perform a GI tract wash in field conditions and obtain 1) abomasal wash samples 2) small intestinal samples 3) fecal samples 3. Definition N/A 4. Personnel SOP issued under authority of: Persons authorized to perform the SOP: Dr. S. Kutz, Jian Wang All lab staff 5. Safety Animals, and their GI tracts, are of unknown pathogenicity (bacterial, fungal, viral and parasitic pathogens are all possible). Proper biosafety procedures should be followed for this process. These include: - Always wearing PPE (latex or nitrile gloves) in exposure situations o Eye goggles are recommended - Wash hands and forearms after performing the diagnostic test As this procedure also involves using cutting equipment (carving knifes/scalpels), care should also be taken not to cut oneself. If a wound is caused with the equipment proper first aid and biosafety procedures for such an incident should be followed. 6. Procedure 6.1 Cut open animal and tie off esophagus, entry to abomasa and start of small intestine to prevent mixing of contents. Remove GI tract. 6.2.1 Extract abomasa and first 3 feet of small intestine from GI tract and place onto separate dissecting trays. 6.2.2 At this point, open the colon of the animal and remove 5g of feces. Place into a labeled sample bag. 6.3 Taking the abomasa, remove the excess fat from the exterior. This will make it easier to manipulate. 6.4 Cut the abomasa open along the greater curvature, and dispose of the loose contents by scrapping gently with fingers. - As the animal is freshly killed the majority of the nematodes will be attached to the mucosal wall. 6.5 Check mucosa for lesions and remove a histology sample (1”x1”) from both the cardia and pyloric areas. Place the samples into sample cups, labeled externally and with an internal waterproof label, filled with 70% ethanol. 6.6 Vigorously rinse the abomasum, at least three times, into a large bucket with water. Also rinse the tray into the bucket. 6.7 Bring the volume of the bucket up to the nearest 0.5L and remove two 10% aliquots. Research Internship University of Utrecht Page 17 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou 6.8 6.9 6.10 6.11 Drain each aliquot, separately, through a #100 sieve and rinse sieve into a labeled sample cup, external and internal waterproof label, with 70% ethanol. Bring the volume of the sample cup up to 100ml with 70% ethanol. - Wash the sieve between uses with liquid soap and high pressure water to remove fat deposits. Examine small samples of the remaining wash on a white dissecting tray and look for nematodes which should be reddish-brown coloured and moving. Go through remainder of the wash in this fashion and place nematodes into heated saline to kill them. Then remove them into labeled cryovials filled with 70% ethanol. Washed abomasum can be discarded. Small intestine (first 3 feet) should be treated as abomasum. 7. Equipment or Materials Required Materials 7.1 #100 Standard sieve (x1) 7.2 Rubber policeman (x1) 7.3 Large dissecting trays (x2) 7.4 Small dissecting tray (white) (x1) 7.5 Dissecting probe or needle nosed tweezers (x1) 7.6 Carving knife (x1) 7.7 1x whirl-pack specimen bag (small) 7.8 Sample containers (x2) 7.9 Cryotubes (x1) 7.10 Freezer proof cryotube labels 7.11 Pencil 7.12 Large plastic bucket, at least 2L 7.13 Water squirt bottle 7.14 Small Petri-dish 7.15 Camp stove 7.16 Saline solution 7.17 Liquid dish soap (preferably dawn) 7.18 Measuring tape Reagents 7.19 70% Ethanol 8. Highlights / Critical Control Points 8.1 As nematodes cannot be dried out for identification, great care should be taken to ensure that all nematodes kept hydrated for work 9. Reporting To be recorded in a blue lab book 9.1 Sample notes (i.e. Animal information, location) 9.2 Concerns during washing - If no concerns; “Sample washed as per SOP – No Concerns” 9.3 Amount reserved in each 10% aliquot. 9.4 Total # of nematodes removed from the remainder of wash Research Internship University of Utrecht Page 18 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Appendix 2 SOP for the analysis of abomasal washes in a quantitative manner 1. Procedure Title: Method for the analysis of abomasal washes in a quantitative manner 2. Introduction This technique is used to analyse abomasal washes to quantify and isolate both larval nematodes and adult GI parasites. 3. Definition N/A 4. Personnel SOP issued under authority of: Persons authorized to perform the SOP: Dr. S. Kutz, Jian Wang All lab staff 5. Safety As all materials are preserved in 70% ethanol or formalin the pathogenicity of the sample is vastly reduced, however standard laboratory safety procedures should still be followed. - Standard PPE (Lab coat and gloves) should be worn at all times - Wash hands and forearms after performing the analysis Formalin is highly carcinogenic and great care should be taken not to inhale or have skin contact with the preservative. If direct exposure occurs, laboratory procedures for chemical contact should be followed. 6. Procedure 6.1 Take the sample to be examined and drain it through a #400 standard sieve - Ethanol can be drained into the sink directly; if the sample is preserved in formalin it must be drained into a metal hazardous liquid container and disposed of in the appropriate liquid waste container 6.2 With water, rinse the sample container and label into the sieve and then rinse the sample repeatedly to remove any traces of ethanol/formalin - This can be done directly into the sink 6.3 Scrape the contents using a rubber policeman and/or rinse back into the sample container with water and fill to 100mL 6.4 Taking a 5mL syringe with the tip cut off, stir the sample and remove 10mL (10%) into a petridish. Rinse the syringe vigorously into the dish and check for adult worms which may be stuck to the syringe walls. Close the sample container. - If samples are very thick 5mL (5%) can be aliquoted instead 6.5 Using a 3mL bulb-pipette with the tip cut off, aliquot small samples from the petri-dish onto a grid petri-dish and dilute with water. - Be prepared to dilute a lot! 6.6 Examine the grid petri-dish on a dissecting microscope under 3.2 power. Look for and remove adult GI parasites and larval nematodes. 6.6.1 Adult nematodes should be counted (using a multi-count desk counter) and placed into small petri-dishes filled ~1/2 way with 70% ethanol. Separate counts for males, females and heads. - Nematodes should always be scooped from the sample and never tweezered. Research Internship University of Utrecht Page 19 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou 6.6.2 6.7 6.8 6.9 6.10 6.11 6.12 6.13 Larva should be counted and removed into a small cryotube filled halfway with 70% ethanol using a 10μL pipette - Once having ejected a larva into the cryotube dip the pipette tip into water so as to not agitate the sample by adding ETOH to the petri-dish Once whole petri-dish has been examined, rinse dish into a large plastic beaker and return to Repeat until first 10% sample is complete. Remove another 10% sample aliquot as per 6.4, and examine as above. Once two 10% aliquots have been examined, the rest of the sample can be observed following the same pattern under 1.2 power and only adult nematodes should be counted/reserved. - If sample is particularly dense, it can be rinsed through a #100 standard sieve at this point to remove small particulates Once the full sample has been examined, check bulb-pipette to ensure no adults are trapped on the walls. Cryotubes filled with 1.5mL 70% ethanol should be prepared for female, male and nematode bits. The reserved nematodes should be recounted and then placed in these. Each tube should be labeled (as below) and then placed into -80°C freezer Wash waste can be discarded down sink, and all equipment should be washed as per lab protocols. 7. Equipment or Materials Required Materials 7.1 #400 and #100 Standard sieves 7.2 Rubber policeman 7.3 5mL syringe with tip cut off (should be melted to ensure no rough edges) 7.4 3mL bulb-pipette with tip cut off 7.5 Dissecting probe or needle nosed tweezers for removing adult nematodes 7.6 10μL pipette and tips 7.7 1x Grid petri-dish 7.8 1x Petri-dish large, 3x petri-dish small 7.9 5 cryotubes 7.10 Freezer proof labels 7.11 Pencil 7.12 Large plastic beaker 7.13 Water squirt bottle Reagents 7.14 70% Ethanol 8. Highlights / Critical Control Points 8.1 As nematodes cannot be dried out for identification, great care should be taken to check the syringe and bulb-pipette to ensure that no nematodes are trapped on walls 8.2 During the second stage of the analysis for adult nematodes; - Males include fractured portions with a copulatory bursa - Females include fractured portions with a vulva - Bits include heads and middle portions 8.3 Care should be taken to not count immature adults in adult count Research Internship University of Utrecht Page 20 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou 8.4 Care should be taken not to press/tweeze adult nematodes as this can cause them to explode/break. Always scoop out adults. 9. Reporting To be recorded in a blue lab book 9.1 Sample notes (i.e. Date, UCID, AID, SAMPLE TYPE (i.e. Abowash), TYPE OF PRESSERVATIVE and APPROX. VOLUME OF CONTENTS) should be recorded before start of procedure 9.2 Concerns during washing - If no concerns; “Sample washed as per SOP – No Concerns” 9.3 Counts of Aliquot I (Larva, Males, Females, Bits), Aliquot II (Larva, Males, Females, Bits), 80% Remainder (Males, Females, Bits). 9.4 Total adult counts (as adults from larval aliquots and 90% remainder can be stored together 9.5 Number of vials reserved To be recorded on record sheet 9.6 Separate “Abomasal wash examination sheet” should be filled in as analysis occurs Research Internship University of Utrecht Page 21 Gastrointestinal parasite diversity and relation to climate in west Greenland caribou Appendix 3 Key to the males of common abomasal nematode species of Rangifer spp. Research Internship University of Utrecht Page 22