Time Resolved Pulsed Laser Photolysis Study of Pyrene Fluorescence Quenching by IAnion Report by: Kelly Helfrich Lab Team: Tim Haggerty, Kristen Woznick, Arjun Plakkat The Pennsylvania State University, Department of Chemistry, CHEM 457, Section 1 Report Submitted: September 10, 2013 Abstract In this experiment, varying concentrations of pyrene in a 50% ethanol-water solution is fluoresced and quenched by the I- anion using laser photolysis. The main objective of the lab was to measure the rate constants, of inherent fluorescence decay and of quenching by iodide anion, of this reaction using nanosecond laser photolysis. The rate constant for spontaneous fluorescence decay (ko) was determined to be (3.8 ± 0.9)*106 s-1 and the quenching rate constant (kq) for the reaction of I- with excited pyrene was measured to be 125 ± 35.9 M-1 s-1. Introduction Fluorescence spectroscopy is a tool used to study the lifetime of a molecule in an excited state. Molecules in an excited state exhibit different properties than in their ground state.1 In the transition from a ground state to excited state, a molecule will promote an electron up to a higher electron shell (one further from the nucleus). 2 Pyrene will promote an electron when a UV light with wavelength of 337 nm is pulsed at the molecule with a nitrogen laser. Pyrene in its excited state has a higher reduction potential than in its ground state due to the promotion of the electron.1 Pyrene Fluorescence Quenching by I- Anion Helfrich 2 In general, aromatic compounds are much more stable than their alkane counterparts due to the electron delocalization, or resonance forms it exhibits.3 Pyrene (Py) is a polycyclic aromatic hydrocarbon (PAH);4 its chemical structure is shown below in Figure 1. Figure 1: Chemical structure of Pyrene demonstrating aromaticity As a stable PAH, Py in its ground state will not react with an electron donor in a redox reaction.4 In stark contrast, Pyrene in its excited state (*Py) is a good electron acceptor largely due to conjugation. In the presence of an electron donor, such as I-, *Py will undergo a quenching reaction to form Py- and an Iodine radical.1 Over time, *Py will relax back to its ground state through both fluorescence of a photon and by radiationless decay from losing energy as heat. The reaction mechanism is shown below in Figure 2. Py + I- + hv1*Py (excitation from photons) *Py + I- Py- + I (quench of *Py) *PyPy + hv2 (fluorescent decay of photon) *PyPy + heat (radiationless decay through loss of heat) Figure 2: Reaction mechanism for excitation and decay of Pyrene through excitation from a photon. The decay of *Py comes from a quenching mechanism, fluorescent decay, and loss of heat. Treating Py as a reactant and *Py as the product in the reaction Py + I- Py*, the rate of molecules relaxing from the excited to ground state can be written as the sum of the concentration of the product times a constant, ko as shown in the following equation: Pyrene Fluorescence Quenching by I- Anion -d[*Py]/dt = ko[*Py] Helfrich 3 (1) If it is assumed that [*Py] is proportional to the intensity, I, equation one becomes I=Io*exp(-kot) (2) Both of these equations use ko, which is the rate constant for the spontaneous decay of *Py. When determining kq, we assume that since the concentration of the quencher is much larger than the concentration of the pyrene, the rate constant will only depend on the concentration of the quencher; therefore, the kinetics of the reaction can be considered pseudo-first order.1 The equation for both spontaneous fluorescence and quenching can be written as follows: -d[*Py]/dt = (ko + kq[I-])[*Py] (3) The term (ko + kq[I-]) is the combined rate constant for both spontaneous decay (ko) and the pseudo-first order quenching (kq[I-]). The observed rate constant (kobs) can be determined from a graph of the fluorescence emittance vs. time. The data will show exponential decay in the form of y=a*exp(-kt) where k=kobs. A graph of kobs vs. [I-] will portray a linear relationship where ko is the y-intercept and kq is the slope.1 Experimental The complete experiment description can be found in the lab packet for CHEM 457 Experimental Physical Chemistry pages 5-5 to 5-7.1 In this experiment, a laser photolysis setup is used as the primary apparatus. A diagram of the setup is shown below in Figure 3. Pyrene Fluorescence Quenching by I- Anion Helfrich 4 Figure 3: Laser photolysis setup to measure the emittance intensity in arbitrary units over time with optical filter absorbing light below 350 nm Five flasks containing varying concentrations of KI (0, 10, 20, 30, 40 mM) were analyzed with the laser photolysis setup. The KI powder was measured to be 0.1659 g KI ± 0.0004 g to create a 40 mM KI solution in 50% ethanol-water in a 10 mL ± 0.05 mL volumetric flask. A serial dilution was performed from the 40 mM solution to form 30 mM (by transferring 3 mL of the 40 mM flask to another 10 mL volumetric flask), 20 mM (by transferring 2 mL of the 40 mM solution to a new 10 mL volumetric flask), and 10 mM (by transferring 1 mL of the 40 mM solution to a new 10 mL volumetric flask) solutions. The solutions were then diluted with 50% ethanol-water solution by filling to the 10 mL line on each flask. The sample was place in a quartz cuvette and then purged for a minimum of five minutes with nitrogen in order to remove any oxygen present in the solution. A needle was placed in the cuvette with a glass stopper on top to create a seal. The apparatus used did not create a perfect seal which could have let some oxygen into the sample. It is imperative that oxygen be purged from the sample as it quenches pyrene fluorescence. After purging, the sample was placed in the sample cell of the photolysis setup and the emission intensity was measured. Results The exponential decay data collected is depicted in the graph of Emission Intensity (arbitrary units) vs. Time (ns) below in Figure 4. The best-fit exponential decay equations and the R2 values are displayed on the graph and in the table in Figure 5. Pyrene Fluorescence Quenching by I- Anion Fluorescence Emmision Intensity (arbitrary units) 0.63 0.59 0.55 0.51 0.47 0.43 0.39 0.35 0.31 0.27 0.23 0.19 0.15 0.11 0.07 0.03 -0.01 -75 -0.05 Helfrich 5 Fluorescence Decay of Excited Pyrene via an I- Quench over Time 0 mM 0 mM: y = 0.6628e-0.003x R² = 0.9975 10 mM: y = 0.7157e-0.006x R² = 0.9803 20 mM: y = 0.5513e-0.007x R² = 0.9768 30 mM: y = 0.6647e-0.009x R² = 0.9735 40 mM: y = 0.5445e-0.008x R² = 0.9659 10 mM 20 mM 30 mM 40 mM Expon. (0 mM) Expon. (10 mM) Expon. (20 mM) Expon. (30 mM) Expon. (40 mM) 50 175 300 425 550 Time (ns) 675 800 925 Figure 4: Plot of Fluorescence Decay (arbitrary units) over Time (ns). The exponential best-fit equations and R-squared values for each concentration of KI are expressed on the graph. The coefficient of x serves as the negative kobs value. [I-] (mM) Uncertainty of [I-] R2(linear ln graph) 0 0 0.999 10 2.24*10-4 0.9989 20 4.48*10-4 0.9980 30 6.72*10-4 0.9984 40 8.96*10-4 0.9984 Figure 5: Table relating [I-] to the exponential decay and R-squared values. As the [I-] increases, the R-squared value for the exponential decay decreases. Regression analysis was performed in Excel. Excel is able to fit linear regressions with much more accuracy than it can exponential best-fit equations. In order to obtain better data, the linear relationship of the natural log of emittance intensity vs. time is graphed in Figure 6 below. Pyrene Fluorescence Quenching by I- Anion Helfrich 6 This graph provides more accurate kobs values represented as the negative slope of each linear best-fit line. ln(Emmittance Intensity) vs. Time for the Fluorescence Decay of Excited Pyrene in the Presence of I- 0 ln(Emittance Intensity) (arbitrary units) 0 100 200 300 400 600 700 0 mM -0.5 -1 500 0 mM: y = -0.0033x - 0.4374 R² = 0.999 10 mM: y = -0.005x - 0.5181 R² = 0.9989 20 mM: y = -0.0069x - 0.61 R² = 0.998 -1.5 30 mM: y = -0.0089x - 0.4483 R² = 0.9984 -2 10 mM 20 mM 30 mM 40 mM Linear (0 mM) Linear (10 mM) -2.5 40 mM: y = -0.0076x - 0.5865 R² = 0.9984 -3 Linear (20 mM) Linear (30 mM) Linear (40 mM) -3.5 Time (ns) Figure 6: Plot of the natural log of emittance intensity (arb units) vs. time (ns). The kobs values are represented by the negative slope of the linear best-fit equations. The R-squared values for each concentration determine the quality of fit of the trend line. The data included in the graph above was truncated in order to exclude all “noise”, or the data not chemically relevant to the fluorescence of pyrene. Since the lifetime of *Py is known to be between 100 and 300 ns, truncating the data on either end of this range will not affect the results of the calculations for the rate constants.1 The initial noise and rise time as the pyrene is excited from the photon and the final noise after the completion of the fluorescence of *Py were eliminated to ensure that only the chemically-important data would be studied. From the linear best-fit equations, the kobs value for each concentration of I- was determined from the slopes of each line. The kobs values for each concentration are shown in the table in Figure 7 below. Pyrene Fluorescence Quenching by I- Anion [I-] (mM) 0 10 20 30 40 Helfrich 7 k(obs) (1/s) 3.30E+06 5.00E+06 6.90E+06 8.90E+06 7.60E+06 Figure 7: Table of [I-] with the correlating kobs value. These numbers come from the best-fit trend lines in Figure 6. After determining the kobs values for each concentration, a graph of kobs vs. [I-] was constructed which can be seen below in Figure 8. The linear best-fit line shows the relationship between the quenching rate constant (kq) and the spontaneous fluorescence decay rate constant (ko); the algebraic relationship can be expressed through the following equation: kobs=(kq)*[I-] + ko, where kq is the slope and ko is the y-intercept. From the linear best-fit graph and the linear regression (see Uncertainty Analysis section in the Appendix for the linear regressions), the value of ko is 3.84*106 ± 8.79*105 s-1and kq to is 1.25*105 ± 3.59*104 mM-1 s-1. Observed Rate of Decay vs. Quencher Concentration [I-] 1.00E+07 y = 125000x + 4E+06 R² = 0.8016 k(obs) (1/s) 8.00E+06 6.00E+06 Series1 4.00E+06 Linear (Series1) 2.00E+06 0.00E+00 0 10 20 30 40 Quencher Concentration [I-] (mM) 50 Pyrene Fluorescence Quenching by I- Anion Helfrich 8 Figure 8: Plot of kobs vs. concentration of KI. The y-intercept recpresents ko which is equivalent to (3.8 ± 0.9)*106 s-1, the spontaneous fluorescence rate constant. The slope of the line represents the kq value, or the rate constant for the [I-] quenching mechanism. A linear regression was performed in Excel for each ln(emittance intensity) vs. time graph and for the kobs vs. [I-] graph. The results from these regressions were incorporated into the standard errors provided above. The linear regression analysis data can be found in the Appendix under Uncertainty Analysis. Discussion From the data gathered above, several conclusions can be drawn. It should be noted that the 30 mM KI solution data has a steeper decline, or faster quenching rate, than the 40 mM KI solution data, opposite of what was expected . The primary reason for the cause of this error has been determined to be errors in the serial dilution. The precision of the instruments used (reference the Uncertainty Calculations of [KI] in the Appendix) alone does not account for the error; however, compounded with the effects of human error such as an extra drop on the outside of a pipette or inaccurate measurements, this hypothesis can explain the deviation of the results from the literature values. As depicted in the Experimental section, the lab group created 10 mL of stock solution of 0.1 M ± 7.41*10-4 M KI in 50% ethanol-water solution. A total of 6 ± 0.06 mL were removed from the stock solution to create the 30 mM, 20 mM, and 10 mM solutions. The remaining solution was diluted in 50% ethanol-water to form a 40 mM solution. During the serial dilution, it is believed the lab group transferred more volume to each flask than required leaving a lack of KI in the 40 mM flask. This lead to the rate constant for the 40 mM solution to be almost equivalent to the 30 mM solution. Pyrene Fluorescence Quenching by I- Anion Helfrich 9 This plausible explanation is further endorsed by the following information. First, there is no evidence of contamination of the KI samples. If contamination had occurred, there would be noticeable deviations from the exponential decay equations of the graph is Figure 4. Similarly, the graph in Figure 6 of the natural log of the emittance intensity versus time would have noticeable deviations from the linear best-fit equations. The R-squared values of each bestfit line prove that the fit is very good, since the values are very close to one. It is expected that the natural log of the y-values would show a linear relationship since the reaction is pseudo-first order, meaning it is only dependent on the concentration of the quencher in this case. Furthermore, there is little evidence to support the hypothesis that enough oxygen entered the 40 mM KI solution sample to affect the rate of fluorescence decay by such a great amount. Since the procedure for purging the oxygen from the sample was followed closely by all lab members, the lab group was able to rule out this hypothesis. Also, it is very difficult to measure the amount of oxygen in a sample; since this value is very likely to be negligible, the lab group decided this conclusion was not worth investigating further. In addition, the data from the 0 mM KI solution (the inherent sample) proves that the equipment and apparatus used were functioning properly. The data and graphs from the 0 mM KI solution were right on track with the literature expectations. This also points to an error in the serial dilution as the 0 mM KI solution is the only sample that was not part of the serial dilution. After reviewing all the above hypotheses, it is apparent that the error must have occurred during the serial dilution phase of the experiment. The 10 mM, 20 mM, and 30 mM KI solutions all appear to have a similar trend in the increase of the kobs value as the concentration increases. This trend is most noticeably seen in the graph of kobs vs. [I-] in Figure 8 above. They form almost a direct linear relationship. This would make sense if extra solution was transferred from Pyrene Fluorescence Quenching by I- Anion Helfrich 10 the 40 mM to the 10, 20, and 30 mM KI solutions; the amount transferred over the intended amount is proportional to a constant for these three concentrations. Slight deviations from literature values can also be accounted for by the precision limitations of equipment used in the lab. During this experiment, uncertainties were calculated for each measurement affected by the following equipment: Mettler AE100 balance, 10mL volumetric flask (Class B), and 1mL glass pipette. The uncertainties of these pieces of equipment are listed in the Appendix under Uncertainty Calculations. A suggestion to increase the accuracy of the experiment is to start with a stock solution of 100 mL instead of 10 mL. During the serial dilution, 10 mL, 20 mL, and 30 mL would be transferred to separate flasks to form 10, 20, and 30 mM KI solutions. The increase in volume would ensure that deviations due to pipetting error would be more negligible. Another aspect to consider for future experiments would be to compare kq values of different quenching agents to evaluate the strength of different quenchers; the lab groups could then identify what properties make one quencher superior to another. A final suggestion would be to add a mechanism such as an analyzer or a separate experiment to determine the amount of oxygen present in each sample. This data would prove the negligible amount of oxygen in each sample and therefore disregard the hypothesis that the oxygen interfered with the quenching rate constant in differing magnitudes for different concentration samples. Conclusion Overall, the experiment was a limited success. The objectives of the lab, to determine the rate constants ko and kq, were met and the theory behind the experiment was recognized; however, with the possibility of using the wrong concentrations, the rate constants obtained Pyrene Fluorescence Quenching by I- Anion Helfrich 11 cannot be trusted without repeating the experiment. The kq and ko rate constants were determined from the slope and y-intercept respectively of the kobs vs. [I-] plot. The kq value was found to be (125± 35.9)*104 M-1 s-1 for I- as the quenching agent in 50% ethanol-water. The ko value was calculated to be (3.8 ± 0.9)*106 s-1. Although there was one major deviation from the expected results, the fact that the 30 mM KI solution decayed at a faster rate than the 40 mM KI solution, the errors in serial dilution can explain this result. Furthermore, the simple fix of increasing the volume of the initial 0.1 M KI stock solution will quickly and effectively eliminate this error in future experiments. In summation, I learned how to experimentally calculate rate constants from a graph of collected data. I also learned that as the concentration of a strong quencher increases, the rate of decay will increase. The material learned from both the successes and errors in the lab provided for an effective learning experiment. Appendix Acknowledgments I would like to acknowledge Jennifer Tan, Dr. Doug Archibald, and Dr. Bratoljub H. Milosavljevic for their combined help both during and outside of the lab. Their help was instrumental in our understanding of both the lab procedure and the final results. Literature Cited 1. Milosavljevic, Bratoljub H. Lab Packet for CHEM 457 Experimental Physical Chemistry. “Time Resolved Pulsed Laser Photolysis Study of Pyrene Fluorescence Quenching by IAnion.” University Press: University Park, 2013. 2. “Electron Structure of Atoms.” Principles of Chemistry. <http://faculty.colostatepueblo.edu/linda.wilkes/111/3c.htm>. Web. 7 September 2013. Pyrene Fluorescence Quenching by I- Anion Helfrich 12 3. Reusch, William. "Aromaticity." N.p., 9 May 2013. Web. <https://www2.chemistry.msu.edu/faculty/reusch>8 Sept. 2013. 4. "Pyrene." Agency for Toxic Substances and Disease, n.d. Web. <http://www.epa.gov/osw/hazard/>.7 Sept. 2013. Sample Calculations 1. Calculate the amount of KI needed to create 10 mL of a 0.1M KI solution 0.1 mol KI 165.998 g KI 1L mol KI 1000 mL L 10 mL = 0.165998 g KI 2. Calculate the concentration of KI solution in 10 mL volumetric flask: 10 mM KI solution 1 mL 0.1 mol KI L 1L 1000 mL 1000 mmol 1 mol = 0.1 mmol KI CKI,10 = (0.1 mmol KI)/(0.01 L) = 10 mM 20 mM KI solution 2 mL 0.1 mol KI L 1L 1000 mL 1000 mmol 1 mol = 0.2 mmol KI CKI,20 = (0.2 mmol KI)/(0.01 L) = 20 mM 30 mM KI solution 3 mL 0.1 mol KI L 1L 1000 mL 1000 mmol 1 mol = 0.3 mmol KI CKI,30 = (0.3 mmol KI)/(0.01 L) = 30 mM 40 mM KI solution 4 mL 0.1 mol KI L 1L 1000 mL 1000 mmol 1 mol CKI,10 = (0.4 mmol KI)/(0.01 L) = 40 mM Uncertainty Analysis = 0.4 mmol KI Pyrene Fluorescence Quenching by I- Anion Helfrich 13 1. Linear Regression Analysis of plot LN(Emission Intensity) vs. Time (s): 0 mM Regression Statistics Multiple R 0.9994883 R Square 0.9989769 Adjusted R Square 0.9989762 Standard Error 0.0176017 Observations 1457 ANOVA df Regression 1 Residual 1455 Total 1456 Intercept Time (ns) SS 440.16664 0.4507867 440.61743 MS 440.16664 0.0003098 F 1420721.6 Significance F 0 P-value Lower 95% Coefficients Standard Error -0.4377351 0.0009351 -468.11111 0 -0.4395694 -0.003267 2.741E-06 -1191.9403 0 -0.0032724 t Stat Upper 95% 0.4359008 0.0032616 Lower 95.0% Upper 95.0% -0.4395694 -0.4359008 -0.0032724 -0.0032616 2. Linear Regression Analysis of plot LN(Emission Intensity) vs. Time (s): 10 mM Regression Statistics Multiple R 0.9994549 R Square 0.9989102 Adjusted R Square 0.9989092 Standard Error 0.0204429 Observations 1077 ANOVA df 1 1075 1076 SS 411.781201 0.449255 412.230456 Intercept Coefficients -0.5181162 Standard Error 0.00126934 t Stat -408.1766 Time (ns) -0.0049721 5.009E-06 -992.63831 Regression Residual Total MS 411.7812 0.0004179 F 985330.81 P-value Significance F 0 0 Lower 95% -0.5206069 Upper 95% -0.5156255 Lower 95.0% -0.5206069 Upper 95.0% -0.5156255 0 -0.0049819 -0.0049623 -0.0049819 -0.0049623 3. Linear Regression Analysis of plot LN(Emission Intensity) vs. Time (s): 20 mM Regression Statistics Multiple R 0.9990117 R Square 0.9980243 Adjusted R Square 0.9980222 Standard Error 0.0327356 Observations 927 ANOVA df Regression Residual Total 1 925 926 Coefficients SS 500.730597 0.99124944 501.721847 MS 500.7306 0.0010716 F 467264.63 Significance F 0 Standard t Stat P-value Lower 95% Upper 95% Lower Upper Pyrene Fluorescence Quenching by I- Anion Intercept Time (ns) Helfrich 14 -0.610029 Error 0.0021975 -277.60134 0 -0.6143416 -0.6057163 95.0% -0.6143416 95.0% -0.6057163 -0.0068662 1.0045E-05 -683.56758 0 -0.0068859 -0.0068464 -0.0068859 -0.0068464 4. Linear Regression Analysis of plot LN(Emission Intensity) vs. Time (s): 30 mM Regression Statistics Multiple R 0.9992073 R Square 0.9984152 Adjusted R Square 0.998413 Standard Error 0.0302012 Observations 739 ANOVA df 1 737 738 SS 423.4956063 0.672227493 424.1678338 Intercept Coefficients -0.4482895 Standard Error 0.002283097 t Stat -196.3515 Time (ns) -0.0088713 1.30193E-05 -681.39676 Regression Residual Total MS 423.49561 0.0009121 F 464301.54 P-value Significance F 0 0 Lower 95% -0.4527716 Upper 95% -0.4438073 Lower 95.0% -0.4527716 Upper 95.0% -0.4438073 0 -0.0088969 -0.0088458 -0.0088969 -0.0088458 5. Linear Regression Analysis of plot LN(Emission Intensity) vs. Time (s): 40 mM Regression Statistics Multiple R 0.9992046 R Square 0.9984099 Adjusted R Square 0.998408 Standard Error 0.030144 Observations 863 ANOVA df 1 861 862 SS 491.2290502 0.782358122 492.0114083 Intercept Coefficients -0.5865165 Standard Error 0.002096976 t Stat -279.69637 Time (ns) -0.0075711 1.02971E-05 -735.25976 Regression Residual Total MS 491.22905 0.0009087 F 540606.92 P-value Significance F 0 0 Lower 95% -0.5906323 Upper 95% -0.5824008 Lower 95.0% -0.5906323 Upper 95.0% -0.5824008 0 -0.0075913 -0.0075509 -0.0075913 -0.0075509 Uncertainty Calculations of [KI] Uncertainty of Mettler AE100 balance: +- 0.0004 g Uncertainty of 10 mL volumetric flask (assume Class B): +-0.05 mL Uncertainty of 1 mL glass pipette: +- 0.01 mL Pyrene Fluorescence Quenching by I- Anion Helfrich 15 1. Stock 0.1 M solution KI 0.1659 𝑔 𝐾𝐼 ∗ 𝐶= 𝑚𝑜𝑙 = 0.001 𝑚𝑜𝑙 𝐾𝐼 165.9 𝑔 𝐾𝐼 𝑚𝑜𝑙 0.001 𝑚𝑜𝑙 𝐾𝐼 = = 0.1 𝑀 𝐾𝐼 𝑣𝑜𝑙𝑢𝑚𝑒 0.01 𝐿 Relative Uncertainty: (flask) + (balance) 0.05 0.0004 + = 0.007411 10 0.1659 Uncertainty: C = 0.1 M ± 7.41*10-4 M 2. 30 mM solution KI 1𝐿 3 𝑚𝐿 ∗ 1000 𝑚𝐿 ∗ 0.1 𝑚𝑜𝑙/𝐿 𝑚𝑜𝑙 𝐶= = = 0.03 𝑀 𝐾𝐼 𝑣𝑜𝑙𝑢𝑚𝑒 0.01 𝐿 Relative Uncertainty: (3X pipette) + (flask) + (uncertainty of stock solution) 0.01 + 0.01 + 0.01 0.05 7.41 ∗ 10−4 + + = 0.02241 3 10 0.1 Uncertainty: C = 0.03 M ± 6.72*10-4M [I-] (mM) Uncertainty Concentration with Uncertainty 10 2.24*10-4 0.01 M ± 2.24*10-4M 20 4.48*10-4 0.02 M ± 4.48*10-4M 30 6.72*10-4 0.03 M ± 6.72*10-4M 40 0.04 M ± 8.96*10-4M Figure 9: Table of [KI] uncertainty values 8.96*10-4