emi12893-sup-0001-si

advertisement

Supplementary Information

Figure S1. Partial phylogenetic tree of homologs of AhpL demonstrate this AHP group is present in a broad range of bacteria.

Homologs to AhpL (red arrow) are encoded by a diverse group of bacteria including several known Mn(II)-oxidizers (blue arrows). A list of AhpL

homologs was generated via blastp (Altschul et al. 1990) and for simplicity the initial list of

amino acid sequences (62) was trimmed of shorter sequences and of sequences from closely related organisms (based both on 16S rRNA gene sequence and AHP protein sequence). The outgroup (green arrow) represents the closest eukaryotic protein match to the bacterial AHP

cluster (using PSI-BLAST (Altschul et al. 1997) of AhpL and alignment of homologs to the bacterial cluster). Amino acid sequence alignment was conducted using ClustalX (2.1) (Larkin et al. 2007) and the alignment imported into Geneious version 6.1.6 (Biomatters).

1

Table S1. Putative proteins encoded in Locus 1 (Scaffold Accession number: NC_ABCR01000001 )

Start a

End Protein Name Locus Putative Protein Description b

171067 169640 RAZWK3B_01330 EDM72820 hypothetical protein

171227 171994 RAZWK3B_01335 EDM72821 tRNA pseudouridine synthase A

175965 172132 RAZWK3B_01340 EDM72822 heme peroxidase (AhpC)

181188 176068 RAZWK3B_01345 EDM72823 Animal haem peroxidase (AhpB)

182849 181155 RAZWK3B_01350 EDM72824 Animal haem peroxidase (AhpA)

184649 183192 RAZWK3B_01355 EDM72825 Cation/multidrug efflux pump, RND superfamily protein

186252 184567 RAZWK3B_01360 EDM72826 Cation/multidrug efflux pump, RND superfamily protein

187475 186249 RAZWK3B_01365 EDM72827 secretion protein HlyD

188783 187503 RAZWK3B_01370 EDM72828 5-aminolevulinic acid synthase

189770 189150 RAZWK3B_01375 EDM72829 two component transcriptional regulator, LuxR family protein

190490 191317 RAZWK3B_01380 EDM72830 hypothetical protein

193672 191354 RAZWK3B_01385 EDM72831 Hemolysin-type calcium-binding region

194228 193815 RAZWK3B_01390 EDM72832 hypothetical protein

195561 194233 RAZWK3B_01395 EDM72833 type I secretion membrane fusion protein, HlyD family

197426 195576 RAZWK3B_01400 EDM72834 RTX toxins and related Ca2+-binding proteins-like protein

199123 197423 RAZWK3B_01405 EDM72835 type I secretion system ATPase

199578 200666 RAZWK3B_01410 EDM72836 GGDEF domain

200997 201311 RAZWK3B_01415 EDM72837 periplasmic sensor hybrid histidine kinase

201349 201741 RAZWK3B_01420 EDM72838 sensor histidine kinase/response regulator hybrid a – CDS identified on the complementary strand are in italics and start at a higher position than they end b - AHPs are listed in bold and possible proteins associated with TISS are in italics

2

Table S2. Putative proteins encoded in Locus 2 (Scaffold Accession number: NC_ABCR01000012 )

Start a

End Protein Name Locus Putative Protein Description b

71924 71622 RAZWK3B_00390 EDM69961 D-fructose-6-phosphate amidotransferase

72084 72851 RAZWK3B_00395 EDM69962 tRNA pseudouridine synthase A

83708 72989 Animal heme peroxidase (AhpL)

87110 84051 RAZWK3B_00410 EDM69965 probable transporter transmembrane protein

87676 87107 RAZWK3B_00415 EDM69966 Secretion protein HlyD

88326 87685 RAZWK3B_00420 EDM69967 tRNA pseudouridine synthase A

89634 88354 RAZWK3B_00425 EDM69968 5-aminolevulinic acid synthase

90372 90001 RAZWK3B_00430 EDM69969 response regulator receiver

91339 92166 RAZWK3B_00435 EDM69970 hypothetical protein

92259 92690 RAZWK3B_00440 EDM69971 hypothetical conserved protein

92687 93040 RAZWK3B_00445 EDM69972 probable insertion sequence transposase protein

93095 94654 RAZWK3B_00450 EDM69973 probable insertion sequence transposase protein

97039 94721 RAZWK3B_00455 EDM69974 Hemolysin-type calcium-binding region

97595 97182 RAZWK3B_00460 EDM69975 hypothetical protein

98928 97600 RAZWK3B_00465 EDM69976 type I secretion membrane fusion protein, HlyD family

100937 98943 RAZWK3B_00470 EDM69977 RTX toxins and related Ca2+-binding proteins-like protein

102634 100934 RAZWK3B_00475 EDM69978 type I secretion system ATPase

102974 104833 RAZWK3B_00480 EDM69979 Ribosomal-protein-alanine acetyltransferase

104871 105263 RAZWK3B_00485 EDM69980 sensor histidine kinase/response regulator a – CDS identified on the complementary strand are in italics and start at a higher position than they end b - AHPs are listed in bold and possible proteins associated with TISS are in italics. An inserted section different from locus 1 is shaded gray

3

200

M Mn(II) 200

M Mn(II)

+NADH

A B

200

M Mn(II)

+Cu(II)

C

1 2 3 1 2 3 1 2 3

Figure S2. In-gel Mn(II) oxidation assay in HEPES buffer of Roseobacter sp. AzwK-3b soluble proteins.

As in Figure 2, R. sp. AzwK-3b soluble protein extracts from replicate cultures (lanes 2, 3) were separated via SDS-PAGE and assayed for Mn(II) oxidation activity

(Francis et al. 2001, Francis and Tebo 2002). However, unlike in incubations in Tris buffer, an

LBB stained Mn(III,IV) band was observed in incubations conducted in 5 mM HEPES buffer and 200

M Mn(II) without NADH added (A), however, LBB bands were noticeably more intense with the addition of 100

M NADH (B). The addition of CuCl

2

(100

M), which scavenges superoxide, prevented the formation of the Mn(III,IV) band formation (C).

Thus, Mn(II) oxidation was not the result of direct enzymatic activity but was instead initiated by superoxide and the observed proteins were likely involved in the stabilization of Mn(III) and removal of generated H

2

O

2

(Equation 2). These results are in line with previous observations of

superoxide production by HEPES buffer (Keynes et al. 2003),

in vitro oxidation of Mn(II) by R .

AzwK-3b proteins (Figure 1) and the known constraints on superoxide mediated Mn(II)

oxidation (Learman et al. 2013). The observation that HEPES may be a superoxide source to

initiate Mn(II) oxidation suggests that superoxide could also be contributing at least in part to heme peroxidase-mediated Mn(II) oxidation by other organisms.

4

Figure S3. Production and inhibition of superoxide in Roseobacter sp. AzwK-3b culture filtrate proteins.

(Reprinted from Diaz et al., 2013) Proteins from R . AzwK-3b were visible in whole cell extracts and in culture filtrate (Coomassie gel, lanes b and d respectively). Reaction of the protein gel with the superoxide probe NBT under control conditions revealed superoxide production at a single location in the separated whole cell extract (Control gel, lane b). Addition of NADH stimulated superoxide production by whole cell proteins and a single protein band in the cell free filtrate (NADH gel, lanes b and d, respectively). Addition of DPI quenched NADHstimulated superoxide production in whole cell protein extracts and completely inhibited it in the filtrate protein band (NADH+DPI gel, lanes b and d). Protein ladders (all gels, lane a) were prelabeled with stains. Lane description for all gels (labeled in gel 1): protein ladder (lane a), soluble whole cell proteins (lane b), cell-free filtrate proteins (lane d), boiled (denatured) whole cell soluble proteins (lane f) and loading buffer only (lanes c and e).

5

Updated ahpL DNA sequence

ATGGTTTTCGTGAACACAAACGACCTGAAGCACATCCTCGACCAGATCCGCATCGCAGAACA

GCATGCGGCTGGCACGCCGCTGACTGATCTGGTTGCAAACCCCTTGCTGCCTTATGGCCTGC

GTCTTGTTGACGGCACGTTGAACAATTTGACTCCTGGCCGTGAGGAGTGGGGTTCGGCGGAT

CAGGTCATGCCGCGCCTGCTTGAGTCGACCTTCCTGACGCAGCCTGATGCGGCACATCTGGC

CGATCCGAGCCCGCGTGGTGCGCCGGGTGCCGAGCCCACGTCCTATTTGCAGACTTCCGGCT

CGGTTTATGACGCCGAGCCTCGTGTGATCTCGAACCTGATCGCCGATCAGACCCTGTCCAAC

CCCGCCGTCATCGCGGCGGCGCTCAGCCATGCCGGCATGACTGGACAGGCGATGCTGACCA

CGGCCAATGAAATCGTTCAGGCCTATCAGCGCGTCATCGATGCGCAGGCTGCTGCCGGCAAC

GTCGATCAGGCGCTCGAGCTGCAGCGCCAGGAACTGCAGACAGCGCTGGACACTGCCACTG

CTGAACTGACCGCCGCACAAGGCGATGTCGCGGCCAAGACAACTGCCAAGAATGAGGCCGA

TCAGGCCGTGACGCAGGCTCAGGACACGCTCGACAATGCAGCCGCCACGATGGTCACGCTG

CAAGGTCAGGGCCAGGTTGCCGAAATGCAGGTTGCGTTGAATGCCGCTGTCGCGGCGCATA

CGCAGGCCGAAGCTGATCTCAAGGCGGCGCAGGATGAGCTGTTGCAAGCCGAAAGCGCGGC

CGCATCCATGCTGACCATGCACAATGCGAAACAGACCACCGTCACCAACCTGCAGGGGCAA

AAGGCAACGGCTGATCAGGAGCTGGCCACCGCCGAGGGTTTGCTGTCCGACGCCCGGGCCG

CATTGGCGCTGGAGACCGACGCAGCTGGTGCGGTCACCGAGGCCCAGACGGCGGTTGAAAA

CGCCACCACCGCGGTTAGCAATGCGCAGACGCGGGTCAACGAGCTTGACGCACAGCTCACG

CAGGCTGAGGCGGATCTCGCTGATCTGAACACGCAACTTCAGGCCGCAGAGCAGACCCGCG

ATGCGGCTCAGACACGTGTTACGGCCGCTCAGGAGGCCGCCGCGGCAACCCAGGCGGACCG

CGAGGACGCTCAGGCTCTCTTTGACACAGAGGTGAGCGAGCTTGCCACCGCACAGGCCGAG

ATGCTCAGCGCCCTCACGAATTATATCACCGGTGGATCGCTGGCCGATTTCTCGGTTGCGTCC

GCGGCCTATTCTGCTGCCCGCGAAGAAAAACTGGCCGCCGAAACGGCGCTGAATGATGCAA

TCGACGCGGATGACGAGGCCGATCAGGCGGTCATCGACGAAACCGCCGCTCTCACCACGGC

GCAATCTCGGGTCAGCACCCTGACCACGCAGCGCGATAACGATATGACCACGCGTGACGGC

TTGAGCACCCAGTTGGACGAGGCAAACGGCCTCTTGACCAGCGCGCAAAACACTCTGACAG

CCGCCGAGCAGACACTCCAGACGGCCCAGGACGACAATCAGGCCTATGTCGATGCGCAGAA

CGCCGTTGATCTGGCCCAGGCCGATGTCGATGCGGCTCAAGGGATCGTCGATGGCCTCGTGG

CACAGTTGGGGGTTGCTGAAGGCGAACTTGCAACGCTGAACACCAATCTCGGCAACGCCGA

CGCCGAAGTCACCCGTCTCGAAGGCGTGGTTCAGACCGAAACCACCGATCTGGAAACGGCT

GCAGGTGGTGTGACCACGGCTCAGCAGAATCTTGCGGCGGCGCAGATGGCCGATGCCGCCA

TCCTCGCGCAGCTCGACGTGATTGCAGATGCCACCGTTACGCTCACTGAGGCGACAGCGACG

GCCGCTCAGGCAGCCCTGGATCTGACCGCGGCCGAAGGCGTGGAAGCCACAAAGCAGGTCG

CGGTCGACACCGCCACAAGTGATCTCAATGCCCTGACGGCACCTGGTGCGGCTGAAGCCGCC

CTGGCCGCCGCTCAGGCCACCGCCGCCGAGGCGCAGACCACGCTCGACACGCTGCTGACCA

CCCATAACATCACGATGGACGGCAACAACGTTCTGCTGCCCGACGTGACCCCCGATGAAGGT

CTGTCCGCACCCTACAACTCGTGGATGACGCTGTTTGGTCAGTTCTTCGATCACGGCCTCGAC

CTGGTCGGCAAAGGGGGGAGCGGCACCGTCTACATTCCGCTGCAGCCCGATGATCCGCTTTA

CGATGCGAACTCGCCCACCAACTTCATGGTGCTGACCCGCGCCACCAACCAGCCTGGCCCGG

ATGGTATCCTGGGCACCGCGGACGACATCCGCGAGCATTTCAACAAGACCACGCCTTGGGTC

GACCAGAACCAGACCTACACCTCGCACCCCTCGCATCAGGTGTTCCTGCGCGAATACGATAT

CGACGCCAACGGAAACCCTGTCTCCAACGGCTACCTGCTGCACGGCCAGACCGGCGGCATG

GCCACCTGGGGCGATGTCAAGGCGCAGGCTGCGACCAAGCTGGGCATTCAGCTCAATGACA

GCGACGTGCTCGATGGCCCGCTGCTGGCCACCGACCCCTACGGCAACTTCATCCCCGGCGCC

6

AACGGCCTGCCGCAGCTTGTCGTGCCGAACCCTGCCTATGTCGAAGGCGGCACCGAGCCTTT

GAATATCCTGATCGAAGGCGATCTGGCCAACCCCGTCGATGCCAGCCAGGCGCTTCGCAACG

GCCATGCCTTCCTCGAGGATATTTCCCACACCGCGTTCCCCAAGGGCATGATCGACCACGAT

CGCAACCCGATGACGCCTGAAATCGAAGTGTTGCCCGATGCCGATACCGACACCGGCAACG

CGATCATGCCGAACATCTTCGGCATGAACGAAACCTACGACAACGAACTGCTGGACCGCCA

CTTCATCGCCGGTGATGGCCGTGGCAACGAAAACTTCGGTCTGACGGCGGTGCACCATGTGT

TCCACACCGAACACAACCGCCAGGCAGCCGAGATGAAGCAGACCATCCTGGACAGTGGCGA

GTTGGCCTTCATCAACGAATGGCTGGCCACCCCGATCACCGAGGCTGACCTGGCCACCGCGA

CCGTCGACACCGTCGAATGGGATGGCGGGCGTCTGTTCCAGGCCGCCAAGTTCACCACCGAG

ATGCAGTATCAGCACCTCGCCTTCGAAGAGTTCGGCCGCACCGTGCAGCCCCAGATCGCGGC

CTTCGGCGTCAATGGCAGTGCCGAGATCGACGGCGCAGTCATGGCCGAATTCGCCCATGTGG

TGTACCGCTTCGGCCACTCGATGCTGACCGAGAACGTTCACACGATGGACCCCAACGGCGTG

AACACCTCGAACGGTCTGATCGAAGCCTTCCTGAACCCGGTCGCCTTCGACCTCGACCAGAC

CCTGACCTCGGATCAGGCGGCAGGTGCCGTGGCCCGTGGCATGTCCCGCGAAACCGGCGCC

AATATCGACGAGTTCATCACCAGCGCCCTGCGCGACAACCTTGTGGGCCTGCCTCTGGACCT

TGCCGCGCTGAACATCGCGCGGGGTCGGGAAACCGGTGTGCCCTCACTCAATGCCGCCCGCG

AGCAGTTCTACTCCGCCACCGGCAGCGAGTTCCTCAAGCCCTATGAAGGCTGGTCGGAATTT

GCCGCGAACCTCAAGAACCCGGCTTCCATCATCAACTTCATCGCGTCCTACGGCACCCACGA

GACCATCGTGAACGCCACGACCGTGGTGGAAAAGCGCGCTGCGGCCACCGATCTGGTTCTG

GGCGGTGATAACGCCCCGGCGGACCGTCTGGACTTCGTCAACGGCACCGGCGCTTGGGCCG

ACGCGGAAACCGGCATCAACGATGTGGAATTCTGGATCGGCGGTCTGGCCGAGGACATTAT

GCCCTTCGGCGGGATGCTCGGTTCCAGCTTCGGATTCGTGTTCCAGCAGCAGATGGAGGCGC

TTCAGAACGGCGACCGTTTCTACTATCTGGCACGGACCGCCGGCATGAACATGATTGCCGAG

TTGGAAAACAACTCCTTTGCGTCGATGATCGTGCGCAACACCGACATCAAGGACGGCGGCG

CGCATATCCCGGCCAACATCTTCTCGTCGATGGATGTCATCCTCGAGGTGGATCAGGCCGTG

CAGTCCATGCCCGACCCGGTGTCCACCGATGTCGATCCGTTCCTTGCCGCCATGGGCACCAC

CATGGTCGAGCGGGCTACGGCCACGGTGGATGCGCCACTGATCGACGGGGTGCGCGAATAC

GACAACTTCCTCAAGTTCAACGGCGGCGAACACGCGGTGCTCGGCGGCACGGATCAGCGCG

ATATCCTCAACGGCGGCCTCGGTGACGATGCGCTCTGGGGCGGCGCGGGCGATGACCTGCTG

ATCGGTGACGCGGGCGTGAACACCCTGCGCGGCGGGGCCGGCAACGACATCCTCAAGGATG

GCGACGATGTCAGCTTCTTGCATGGCGAAGATGGCGATGACGTGATCTCGGCCGGCGGCGGT

ATCGGCGAACTGATGTTCGGTGGCAAGGGCAACGACGCCATCCTCATGGGGTCAGACGATG

CGGCCACGGCGTTCGGCATGGACGGCAACGACTTCATCTATGGCGGTGCCGGTGGCGAGTTC

ATGTTCGGTGGCGAAGGCGATGACTGGATCGAAGGCGGCGACGGCTTCGACATGGTCATGG

GTGACAACGGCGATCCCTTTGGTGGGTCGCGGGTTGTGGGCCATGACGTTCTGGATGGCGGC

GCCAACGACAACGACCTGCTCGGGGAAGGTGGCGACGATATCCTGATCCAGCGCGAGGGCG

TGCATGTCAACGAAGGCGATCTCGGCTTCGACTGGGTGGCGCATAAAGACGCCATGACCGG

CGCCGATATCGACCTCAGCCGTCGTCTGGAAACCAACGAGACGCAGGCCGCACTCCGCGAT

CGCTACGACCTGGTCGAGGCGGCATCGGGCACGCAGTTCGACGATTTCCTCTACGGCGATGA

CCGCGAAGGCGCGGCGCTGCCGGACGGGATTGATCTGCTGGCCAATGACGCGACGCTCTTC

GCCAACGAACTGACCCAGGCTGGTGTTGACCGGATTGCAGGTCTGCGCGAGTTGCTGGCCGA

CATGATGGGGGTCGATCCCGCTGATACCTTCACCGGCGGCAACATCCTGCTCGGTGGTGGCG

GCAGCGACGTGATCCAGGGCCGCGGCGGCGATGACGTTATCGACGGCGACAAGGCGCTCAA

CGTGCGCATCTCGGTCCGCGATCCCCAGGATCCGACCGTGGAACTGCGCTCCATCAACAGCC

7

TGTTCGAAATCTCGAACGAACTGCTTGATGGCTCGATCAGCCCCGGCCAGCTGCAGATCGTT

CGGGAAATCCTCGATGCCGGTCAGGAAGGCGATGTGGACACGGCTGTCTACTTCGATGTGCG

GGCCAACTACAACATCCGCACCAACGCCGATGGCAGCGTCACGGTCGATCATATCGCACCG

CCCATCGAAGGCGCGTTCATTGACCCGATCAACGGTCAGCCCAACGTGGAAGGTGGTGACG

GCACCGACCGCCTGACCAATGTCGAAATCCTGCGCTTCGCGGATATGGAGATTGATCTGCGC

ACTGATCCGGCCAGCAACGGGTTGATCCAGGGCACCGATGGCGATGATGTGCTCAATGGCA

GCAACGGTCGCGACGCGATCTTCGCAGGCGCTGGAAATGACGTGATCAACGGCCTTGCCGG

AAATGACGTGATCTTTGGCGAAGGTGGCTCCGACACCATCACATGGAACGCGCCCAACGGC

GGCTACGACGTGGTCGTGGGTCATGGCATCGTCAATGACGGCGGCACCGACATGCTGGTGAT

CAACGGCGATGGCACTGAGGACGGCTTCACGATGTACACCGTGGCAGCTTGGACCGGTCAG

GCCCCTGTCGATCCGTCTTCCGAGATCATCATCACCCGGACAGTGGCCGGTGTGGAGACCGC

GATCATGGAAGTGCGCGGCATCGAAGAGGTCGCAATCAACGGGGTGCAGGGGATCGAAACG

ATCAACGCGGTTGGTGACTTCGCAGGCACCTCGCTGGCGCCCAACACGATCTACGTGAACGG

CACGGCAGGCAGAGAAGTGATCGACTTCTCTGGCTTCACCTCGACCCAGCGTCTTGTGGTGG

ATGCAGGTGACGGTCGCGACGTCATCACCGGTGGCGCAGGCAATGATATCCTGAACGCTGG

TGCGGGAGACGACGAAATCACCTGGAGTGTCGGCGGCGGCAGCGATGTGGTCGATGGCGGG

GCAGGTGAAGACACCTACACCATCAACGGCGATGCGTCTGATGAAACCTTCCGCGTCTACGC

GGCGGACTCCTGGACAGGGGCACCCCTGGCCACCGGAACCGACATCGTCATCACCCGCGAC

GCGGGTGCCGGCGAACAGGTGATCGGTCAGCTTCAGAACATCGAGGAAATCCAGATCAACA

CAGCCGGTGGTGTCGACAACGTCGAGGTGATCGGTGACTTCAACCCGACAGCTCTCAACTTC

AACACCATCGCGGTGACGGGTGATGATGTCAGCGTCGATGTCACGCAGCGTCTGTCCACGCA

CCGCGTGTTCGTTGATGTGGGTGGCAACACACAGGATGTGCCCAAGTCGCTGAATGTGGCGG

GTGTTGTAACCGAAGGCGATGTCTTCCTGATCCCGGTCGATCCGACAACCCTGACCCGGACG

GTCGATGGTCTCACGGTGACCCAGAAGTCGGACAACTTCGTCATGACCTACACGGTCGATGA

CGTGGACACGATCCCGGTTCTGGTCCAGTCCGGCACGCTGATGGCCGACGCTCTGCGGGGTG

TGGCCACTGTCAACGAACAGACCGGCTTGCCGGAAGAAGGGTTCGGGTTCGGTGTGCTGAC

GCGCGGTGCCACCCTTGTGACGGCAGATATGGTGACGGCAGATGATATCGCCGCCCTCAAGT

ACATGGTCGGTGCATCCAACGTCGCGCCGATCTTGCCGCCCGAAGCGGGTGAGCCTGCCGAC

AACGAGCCAGCAGATCTCTTGCAAGAGGTGCGCGATCTTGAAGGTCTGACCAACAATCTCCA

GAACGCGGAGATTTCGGGAGGCGCAACCTTGCCCTTCATGCGTGTCACTGAAGCCCGCTATG

CTGGCATCGGCGAAGACGGTGCAGGCATCATCAACCCCGTCTTTGATAGGCTTGATACCCGG

GATATCTCGAACACCTTGGGCGCTCAGGATCTTGACGCGGCCAAGGCGGCCTCGGCCAACAT

GTTCATGATGTCCTTTGGTCAGTACTTCGACCACGGCCTGACCTTCATTCCGAAGGGCAGCG

GTCCGATGGGTCAAACGCTTGGTCAAATCGAAATCGGTGGGCCTAGCATGGATCGTGGGCC

GATGGCCGACAACCCGGCCGACCTGACCCGCGGTAGCGTGATCGGTTATGATGAGGATGGC

ACGCCGCTGCAGGAAAACATCACCTCGCCGGTGGTTGACCAGAACCAGGTCTATGGCTCGTC

CAGCCTGATCGGTCAGTTGCTGCGTGAAAGCGATGGCGAAATGGGTGTCGGCGCACGCATCT

TGATGGGTGGCGATGATCCTTCGGCAGCACCGGGCTTCAAGATCTTGTCCACGCTGCGTGAA

ACGCTCGATCACCACATCGATGCGGGCACCGTGTTCAAGGGTGCGGGTCTTGGTGAAAACG

GCATGACGCTGCTCGACTACTACCCGGGCTTGCGTGACGCCGATCGCAACTACGATGCCGCA

CTGGTGAAAGAGCTTTCTGGCGACTTCATGGATGAGGGCTGGCCGCTTCTGATCGACACCAA

CCCGTTCATGAACCTGCTCGACCACTTTGTGGGCGGCGATGGGCGCGCGAACGAGAACGTG

GGCCTCACCTCGATGCACACGGTTTGGGCACGTAACCACAACTACCACGTGGACCAGATCAA

CAAACAGGCAGGCCCGGATTTCACCCCCGAACAGCTGTTCCAAGCTGCGCGGATCCTGAAC

8

ATCGGTGAATATCAGCAGGTTGTGTTCAACGACTTTGCCGATGCCTTGATCGGTGGCTTGCA

GGGCTCTGGCCGTCATGGGCACAACGAGTATAACCCGAACGCTGATGCCCGCATCAGCCAC

GAGTTTGCCGCCGCCGCCTACCGCTTCGGCCATTCCCAGATCGGCGAAACGATGCTGGTCGA

AAAGGATGGACAGATGGTTGAGCTGCCCCTGATCGACCTGTTCCTGAACCCGACCAGTGATC

CGAATGCCTTCCAGTATGTCGATCGCGAAACAGGTGAATTGGTGACCGGCGAGGCCGCCTTG

GCTGCCTTGGCTCAAATGGACTACGTGCCGCAGGATGGGTACGCTCAATACGGCGTGAACA

GCATCCTCGGCGGTTTGGTTGCACAGCCCTCGGAAGAGGTTGATCTGCAAGTGGTGGATGCG

GTCCGCGACAATCTTGTCCGGGTCAGTGCCGACCTCTTTGCCTTCAACGCTGCACGGGGCCG

CGATTTGGGTCTTGGAACCCTCAACCAGGTCAAGGCCGATCTGGCGGCGTCCACCGACCCCT

ACATCGTGGAAGCGATCGAACAGTCGAACATGAACATGGACCCCTATGCTTCGTGGGATGA

CTTCCAGTGGCGCAACAACCTGTCGGAAACAGAGATCACCAAGTTCAAGACAGCCTACCCG

GATCTGGTTCTGGAAGGTGACGCGATCGCAGCATTCCAGCAGGTCAACCCCGATATCACGCT

GATCCCGGGTGAAAACGGTGCGATGATCGTTCAGGGCATCGACCGGGTCGACATGTGGGTC

GGCGGTTTGGCAGAACCCCATATCGAGGGTGGCGTCGTGGGTCATACCTTCTGGGTGCTGAT

CCATGAACAGCTGGACCGTCTGCAGGAAGGCGACCGGTTCTACTACATCGACCGGATCGGC

GATCTGCCCGTCTACAACAACTTCATCTCCAACCTCACCTTCGGGGATATCGTGACCCGCAA

CACCGGGATGACCGATCTGCCGCTGGATGTGTTCAGCTATGTTCCAGAAGTGCCTGAGGGCG

CAGCTGCAGATGCTGGAAATCAGCAGATCCAGACCGATCAGAACGCAAATCGGACAGATGA

TCCTGCGATCGACACAGCGGATACTGAAGGTGGTGGAACCACGACAGATACCGACGTCACA

GGCGGCGCGGATGATGAGACCGAGGCCGCAGCTACAGAAGGCAACGCTGAGCCAGATCCCC

TGGAGACTGAGGCGAACGCCCTGTCCGAAGGAGCTGTTGAAGGAGGAGTTGACGAAACTGA

ACAACCCGATGCCGATGTGACAGGTTCAACGCTAGAGCAGTCGGCCGAAGAGGAAGAAACC

GAGGAGGATGACGCCACTCAAAACGCTACGGGTGCAGCATCCGGCGGAGAAGACCTGGAG

GCCACGTCTTCTGAAACCAATGAGGAAATGCCTGAAGACAATACTTCCATGTCTCCTGACGA

TGCTGGAGGTGCCGATACAGGCGGCGCGGATGATGAGACCGAAGCCGCAGCTACAGAAGGC

GATAATGAGCCAGATCCCCTGGAGACTGAGGTGAACGCCCTGTCCGAAGGAGCTGGCGAAG

GTGAAGGCGGCGAGGCTGAACAACCTGATGCCGATGTGACAGGTTCAACGCTAGAGCAGTC

GGCCGAAGAGGAAGAAACCGAGGAGGATGACGCCACTCAAAACGCTACGGGTGCAGCATC

CGGTGGAGCAGCCCTGGAGGCCGAAGAGGAAGAAACCGAGGAGGATGACGCCACTCAAAA

CGCTATGGGTGCAGCATCCGGCGGAGCAGACCTGGAGGCCGAAGAGGAAGAAACCGAGGA

GGAAATGCCTGAAGACAACACTTCCATGTCTCCTGACACAGACACCTCGGCCGAGGGGATA

GTCGAAAGCGACACCGATATGGGCGCCCCCCTGGTCGGCGCGGCAGGCGACGACATCCTCA

GCGGGATGGCTGGCGACGACATGCTGGTGGGCAATGCCGGTGACGACATGCTCTTCGGTGG

CGAGGGCCGTGACGACATGCTCGGTGGCGATGGCGCCGACATGCTCTCGGGCGGTGCCGGC

AGCGACCATATCCTCGGCGGCGACGGCGATGACATGATCATCGGCGGAACCGGCTCGGATA

TCCTGATGGGCAATGCAGGCGACGACACGTTCCTTGGAACGAATGGCGACTGCAACGACCT

CATCTACGGTGGCGAAGGGACGGACACGATCGATATGGCGTCGGTCACCTCCGACCTCACG

GTGCGCCTCGGCAATACCGGGACGGATCGTGGCTCGGTCACCACGGAAGAAGGCGGTCGCG

ACACGATCTGGAGCATCGAGAACTTCGTCGGTGGTGCGGGTGACGACACCATCTTCGCCAGC

GACGCGGCCAACGTGCTCGATGGCGGGGATGGCAACGACACCTTTGTGTTCGAAACCGCGG

CCAGCGCGCAGGGCGATCACATCAACGGCCTCAACGCCGGCGATGTCCTGCAGTTCGGCAC

AGGGGCCGACATGTTCGAGCTCACTTGGGGTGACACTGACATGCAGGACGGCTTGTCTTTCT

CCGGAGGAGAAGAAGCCGGTACGACCAAGATCAGTGGAACCATCGAGGATGACCAATTCGA

ACTGACCGTCAGTGGCCGCTTCGACTACGATCAGATCACCTGA

9

Updated AHPL Protein Sequence

VFVNTNDLKHILDQIRIAEQHAAGTPLTDLVANPLLPYGLRLVDGTLNNLTPGREEWGSADQVM

PRLLESTFLTQPDAAHLADPSPRGAPGAEPTSYLQTSGSVYDAEPRVISNLIADQTLSNPAVIAAA

LSHAGMTGQAMLTTANEIVQAYQRVIDAQAAAGNVDQALELQRQELQTALDTATAELTAAQG

DVAAKTTAKNEADQAVTQAQDTLDNAAATMVTLQGQGQVAEMQVALNAAVAAHTQAEADL

KAAQDELLQAESAAASMLTMHNAKQTTVTNLQGQKATADQELATAEGLLSDARAALALETDA

AGAVTEAQTAVENATTAVSNAQTRVNELDAQLTQAEADLADLNTQLQAAEQTRDAAQTRVTA

AQEAAAATQADREDAQALFDTEVSELATAQAEMLSALTNYITGGSLADFSVASAAYSAAREEK

LAAETALNDAIDADDEADQAVIDETAALTTAQSRVSTLTTQRDNDMTTRDGLSTQLDEANGLLT

SAQNTLTAAEQTLQTAQDDNQAYVDAQNAVDLAQADVDAAQGIVDGLVAQLGVAEGELATL

NTNLGNADAEVTRLEGVVQTETTDLETAAGGVTTAQQNLAAAQMADAAILAQLDVIADATVTL

TEATATAAQAALDLTAAEGVEATKQVAVDTATSDLNALTAPGAAEAALAAAQATAAEAQTTL

DTLLTTHNITMDGNNVLLPDVTPDEGLSAPYNSWMTLFGQFFDHGLDLVGKGGSGTVYIPLQPD

DPLYDANSPTNFMVLTRATNQPGPDGILGTADDIREHFNKTTPWVDQNQTYTSHPSHQVFLREY

DIDANGNPVSNGYLLHGQTGGMATWGDVKAQAATKLGIQLNDSDVLDGPLLATDPYGNFIPGA

NGLPQLVVPNPAYVEGGTEPLNILIEGDLANPVDASQALRNGHAFLEDISHTAFPKGMIDHDRNP

MTPEIEVLPDADTDTGNAIMPNIFGMNETYDNELLDRHFIAGDGRGNENFGLTAVHHVFHTEHN

RQAAEMKQTILDSGELAFINEWLATPITEADLATATVDTVEWDGGRLFQAAKFTTEMQYQHLAF

EEFGRTVQPQIAAFGVNGSAEIDGAVMAEFAHVVYRFGHSMLTENVHTMDPNGVNTSNGLIEAF

LNPVAFDLDQTLTSDQAAGAVARGMSRETGANIDEFITSALRDNLVGLPLDLAALNIARGRETG

VPSLNAAREQFYSATGSEFLKPYEGWSEFAANLKNPASIINFIASYGTHETIVNATTVVEKRAAAT

DLVLGGDNAPADRLDFVNGTGAWADAETGINDVEFWIGGLAEDIMPFGGMLGSSFGFVFQQQM

EALQNGDRFYYLARTAGMNMIAELENNSFASMIVRNTDIKDGGAHIPANIFSSMDVILEVDQAV

QSMPDPVSTDVDPFLAAMGTTMVERATATVDAPLIDGVREYDNFLKFNGGEHAVLGGTDQRDI

LNGGLGDDALWGGAGDDLLIGDAGVNTLRGGAGNDILKDGDDVSFLHGEDGDDVISAGGGIGE

LMFGGKGNDAILMGSDDAATAFGMDGNDFIYGGAGGEFMFGGEGDDWIEGGDGFDMVMGDN

GDPFGGSRVVGHDVLDGGANDNDLLGEGGDDILIQREGVHVNEGDLGFDWVAHKDAMTGADI

DLSRRLETNETQAALRDRYDLVEAASGTQFDDFLYGDDREGAALPDGIDLLANDATLFANELTQ

AGVDRIAGLRELLADMMGVDPADTFTGGNILLGGGGSDVIQGRGGDDVIDGDKALNVRISVRDP

QDPTVELRSINSLFEISNELLDGSISPGQLQIVREILDAGQEGDVDTAVYFDVRANYNIRTNADGS

VTVDHIAPPIEGAFIDPINGQPNVEGGDGTDRLTNVEILRFADMEIDLRTDPASNGLIQGTDGDDV

LNGSNGRDAIFAGAGNDVINGLAGNDVIFGEGGSDTITWNAPNGGYDVVVGHGIVNDGGTDML

VINGDGTEDGFTMYTVAAWTGQAPVDPSSEIIITRTVAGVETAIMEVRGIEEVAINGVQGIETINA

VGDFAGTSLAPNTIYVNGTAGREVIDFSGFTSTQRLVVDAGDGRDVITGGAGNDILNAGAGDDEI

TWSVGGGSDVVDGGAGEDTYTINGDASDETFRVYAADSWTGAPLATGTDIVITRDAGAGEQVI

GQLQNIEEIQINTAGGVDNVEVIGDFNPTALNFNTIAVTGDDVSVDVTQRLSTHRVFVDVGGNTQ

DVPKSLNVAGVVTEGDVFLIPVDPTTLTRTVDGLTVTQKSDNFVMTYTVDDVDTIPVLVQSGTL

MADALRGVATVNEQTGLPEEGFGFGVLTRGATLVTADMVTADDIAALKYMVGASNVAPILPPE

AGEPADNEPADLLQEVRDLEGLTNNLQNAEISGGATLPFMRVTEARYAGIGEDGAGIINPVFDRL

DTRDISNTLGAQDLDAAKAASANMFMMSFGQYFDHGLTFIPKGSGPMGQTLGQIEIGGPSMDRG

PMADNPADLTRGSVIGYDEDGTPLQENITSPVVDQNQVYGSSSLIGQLLRESDGEMGVGARILM

GGDDPSAAPGFKILSTLRETLDHHIDAGTVFKGAGLGENGMTLLDYYPGLRDADRNYDAALVK

ELSGDFMDEGWPLLIDTNPFMNLLDHFVGGDGRANENVGLTSMHTVWARNHNYHVDQINKQA

GPDFTPEQLFQAARILNIGEYQQVVFNDFADALIGGLQGSGRHGHNEYNPNADARISHEFAAAA

10

YRFGHSQIGETMLVEKDGQMVELPLIDLFLNPTSDPNAFQYVDRETGELVTGEAALAALAQMDY

VPQDGYAQYGVNSILGGLVAQPSEEVDLQVVDAVRDNLVRVSADLFAFNAARGRDLGLGTLNQ

VKADLAASTDPYIVEAIEQSNMNMDPYASWDDFQWRNNLSETEITKFKTAYPDLVLEGDAIAAF

QQVNPDITLIPGENGAMIVQGIDRVDMWVGGLAEPHIEGGVVGHTFWVLIHEQLDRLQEGDRFY

YIDRIGDLPVYNNFISNLTFGDIVTRNTGMTDLPLDVFSYVPEVPEGAAADAGNQQIQTDQNANR

TDDPAIDTADTEGGGTTTDTDVTGGADDETEAAATEGNAEPDPLETEANALSEGAVEGGVDETE

QPDADVTGSTLEQSAEEEETEEDDATQNATGAASGGEDLEATSSETNEEMPEDNTSMSPDDAGG

ADTGGADDETEAAATEGDNEPDPLETEVNALSEGAGEGEGGEAEQPDADVTGSTLEQSAEEEET

EEDDATQNATGAASGGAALEAEEEETEEDDATQNAMGAASGGADLEAEEEETEEEMPEDNTSM

SPDTDTSAEGIVESDTDMGAPLVGAAGDDILSGMAGDDMLVGNAGDDMLFGGEGRDDMLGGD

GADMLSGGAGSDHILGGDGDDMIIGGTGSDILMGNAGDDTFLGTNGDCNDLIYGGEGTDTIDM

ASVTSDLTVRLGNTGTDRGSVTTEEGGRDTIWSIENFVGGAGDDTIFASDAANVLDGGDGNDTF

VFETAASAQGDHINGLNAGDVLQFGTGADMFELTWGDTDMQDGLSFSGGEEAGTTKISGTIEDD

QFELTVSGRFDYDQIT

Supplemental Information References

Altschul, S. F., W. Gish, W. Miller, E. W. Myers and D. J. Lipman (1990). "Basic local alignment search tool." Journal of Molecular Biology 215: 403-410.

Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller and D. J. Lipman (1997).

"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs." Nucleic Acids

Research 25(17): 3389-3402.

Bertrand, E. M., D. M. Moran, M. R. McIlvin, J. M. Hoffman, A. E. Allen and M. A. Saito (2013).

"Methionine synthase interreplacement in diatom cultures and communities: Implications for the persistence of B-12 use by eukaryotic phytoplankton." Limnology and Oceanography 58(4): 1431-1450.

Doonan, S. (2004). Concentration of Extracts. Protein Purification Protocols. P. Cutler, Humana Press.

244: 85-90.

Francis, C. A., E. M. Co and B. M. Tebo (2001). "Enzymatic manganese(II) oxidation by a marine alpha-

proteobacterium." Appl Environ Microbiol 67(9): 4024-4029.

Francis, C. A. and B. M. Tebo (2002). "Enzymatic manganese(II) oxidation by metabolically dormant spores of diverse Bacillus species." Appl Environ Microbiol 68(2): 874-880.

Keynes, R. G., C. Griffiths and J. Garthwaite (2003). "Superoxide-dependent consumption of nitric oxide in biological media may confound in vitro experiments." Biochem. J. 369(2): 399-406.

Laemmli, U. K. (1970). "Cleavage of structural proteins during the assembly of the head of bacteriophage

T4." Nature 227(5259): 680-685.

Larkin, M. A., G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M.

Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson and D. G. Higgins (2007). "Clustal W and Clustal

X version 2.0." Bioinformatics 23(21): 2947-2948.

11

Learman, D. R., B. M. Voelker, A. S. Madden and C. M. Hansel (2013). "Constraints on superoxide mediated formation of manganese oxides." Front Microbiol 4: 262.

Rose, A. L., A. Godrant, M. Furnas and T. D. Waite (2010). "Dynamics of nonphotochemical superoxide production in the Great Barrier Reef lagoon." Limnology and Oceanography 55(4): 1521-1536.

Schagger, H. and G. Vonjagow (1991). "Blue native electrophoresis for isolation of membrane-protein complexes in enzymatically active form." Analytical Biochemistry 199(2): 223-231.

Wittig, I., H. P. Braun and H. Schagger (2006). "Blue native PAGE." Nature Protocols 1(1): 418-428.

12

Download