STUDY GUIDE FOR MICROBIOLOGY EXAM # 2 (Ch. 11, 12, 6, 9 & 10) Chapter 11: Characterizing and Classifying Prokaryotes Phylogeny and Classification Systems: Binomial nomenclature system Taxonomic categories: Domain, kingdom, phyla or division, class, order, family, genus and species Characteristics of five kingdoms (Prokaryotae or Monera, Protista, Fungi, Animalia, and Plantae) and Archaea domain. Bergey’s Manual of Systematic Bacteriology General characteristics of mycoplasmas, mycobacteria, rickettsias, chlamydias, spirochetes, and Gram-positive/negative bacteria. Know scientific names and importance of selected prokaryotes on list and whether they are Gram positive, Gram negative, or mycoplasmas. Chapter 12: Characterizing and Classifying Eukaryotes Characteristics of Protozoa: Motility adaptations (pseudopods, cilia, flagella and nonmotile), cyst versus trophozoite, and nutritional adaptations. Know scientific names and importance of selected protozoa on list. Characteristics of Fungi: Saprophytes or saprobes, opportunistic parasites, nosocomial pathogens, unicellular (yeasts) versus multicellular (molds and fleshy fungi), oxygen requirements, hyphae (coenocytic or septate and vegetative or reproductive), sexual and asexual spores (conidiospores versus sporangiospores), Nutritional adaptations of fungi Fungal diseases or mycoses: Systemic, cutaneous, subcutaneous, and superficial Economic importance of fungi Know scientific names and importance of selected fungi on list. Characteristics of Algae: Vegetative structures of multicellular algae (thallus, holdfast, stipes, blades, pneumatocyst). Classification: Green algae (chlorophyta), red algae (rhodophyta), brown algae (phaeophyta), golden algae, dinoflagellates, euglenoids, and water molds. Ecological importance of algae. Know scientific names and importance of selected algae on list. Characteristics of Lichens: Combination of a fungus and either an algae or cyanobacteria. Unique ecological role of lichens. Animal Parasites Characteristics of Helminths or Worms: Body structure variations (cuticle, scolex, suckers, proglottids, etc.), adaptations of parasitic worms, and common reproductive strategies (dioecious versus monoecious or hermaphrodite). Platyhelminths (Flatworms): Differences in body structure of trematodes (flukes) and cestodes (tapeworms) Nematodes (Roundworms): Infectious eggs versus infectious larvae Characteristics of Arthropods: Body structure, role as vectors (mechanical versus biological). Classes of Arthropods: Arachnida, Insecta, and Crustacea Know scientific names and importance of selected animal parasites on list. Chapter 6: Microbial Growth and Nutrition Physical Requirements for Growth: Temperature, classification of microbes by temperature requirements (thermophiles, extreme thermophiles, mesophiles, psychrophiles, psychrotrophs), pH and classification of microbes by pH requirements (acidophiles, neutrohiles, alkalinophiles), hydrostatic pressure (barophiles), and osmotic conditions (halophiles, obligate halophiles, osmotic lysis, crenation, plasmolysis, isotonic, hypertonic, and hypotonic solutions). Chemical Requirements for Growth: Carbon, nitrogen, sulfur, phosphorus, calcium, and other trace elements. Oxygen requirements, Examples, and Growth Patterns (Essay Question): Obligate aerobe, obligate anaerobe, facultative anaerobe, microaerophile, and aerotolerant anaerobe. Enzymes responsible for eliminating toxic oxygen by-products and their reactions: Superoxide dismutase, catalase, and peroxidase. Culture Media: Liquid and solid media, agar properties, and types of culture media (chemically defined, complex, differential, selective, reducing (anaerobic), and enrichment). Special culture conditions (anaerobic, carbon dioxide levels, and in live cells or hosts). Microbial cultures: Pure versus mixed culture. Techniques for isolation of pure cultures, streak plate method for isolation, colonies. Microbial Growth: Binary fission and generation time. Stages of Microbial Growth and Graph (Essay Question): Lag, log, stationary and death/decline. Measuring Microbial Growth: Discuss pros and cons of each method. Direct methods: Serial dilution and plate counts (pour versus spread plates), filtration, most probable number (MPN), and direct microscopic count. Indirect Methods: Turbidity, metabolic activity, and dry weight. Chapter 9: Control of Microbial Growth in the Environment Definitions: Sepsis/asepsis, aseptic technique, sterilization, commercial sterilization, antiseptic, disinfectant, degerming, sanitization, bacteriostatic, bactericide, germicide, viricide, sporocide, and fungicide. Microbial Death: Rate of death and factors affecting microbial death. Hierarchy of microbial resistance to death: Prions, endospores, mycobacteria, cysts of protozoa, trophozoites of protozoa, Gram-negative bacteria, fungi, naked viruses, Gram-positive bacteria, and enveloped viruses. Physical Methods of Microbial Control Heat: Thermal Death Point, Thermal Death Time, and Decimal Reduction Time Dry heat, moist heat, autoclave, boiling Pasteurization methods: Classic, flash or High Temperature, Ultra High Temperature (UHT) pasteurization and UHT sterilization Low temperature: Refrigeration and freezing (slow versus flash/quick freezing) Other methods: Filtration, dessication, and lyophilization Osmotic pressure: Effects of isotonic, hypertonic, and hypotonic solutions on cells. Radiation: Effects, pros/cons, and uses of ionizing radiation, ultraviolet light, and microwaves. Chemical Methods of Microbial Control (Essay Question) Types of Disinfectants, Pros/Cons, Examples, and Applications Phenol/phenolics Alcohols Halogens Oxidizing agents Quaternary ammonium compounds (surfactants) Heavy metals Aldehydes Gaseous agents Chapter 10: Control of Microbial Growth in the Body Antibiotic, antiviral, antihelminthic, antifungal, and antiprotozoan drugs Wide versus narrow spectrum antimicrobial activity Mechanisms of Action and Examples for Categories of Antimicrobial Drug (Essay Question): Inhibition of Cell Wall Synthesis Inhibition of Protein Synthesis Injury to Plasma Membrane Inhibition of Nucleic Acid Synthesis Inhibition of Essential Metabolite Synthesis Inhibition of Attachment Safety concerns with the use of antimicrobials Antibiotic Resistance and Development of Resistance in Microbial Populations Prevention of Antimicrobial Resistance