1. Introduction Marine ecosystem is the largest ecosystem in this world. It accounts 70% of the planet Earth. It consists of different geographical zones (Fig 1). Each zone in marine ecosystem has different environment and this environment effects differently on Oceans the biotic and abiotic factors in it. Due to this Salt divers environment living organism produce Esturies Marshes many industrially and medically important compounds in the form of secondary metabolites. Micro-Organisms produce special organic Intertidal Lagoons compounds that have no function in growth zones and development of organisms. These organic Marine compounds are secondary metabolites. These are products of natural selection that are produces in response to environment (Julijana Sea Mangrove Ivanis evic et al, 2010) to bring about Floor biodiversity. Some of these secondary metabolites when extracted from organisms Deep Coral have important industrial and medical uses. Sea Reef Secondary metabolites extracted from Figure 1: Different Components of Marine Ecosystem marine sources have lot of potential in medical applications. Some very significant bioactive compounds have been extracted from marine sources (Table 1). Compound Aureoverticillactam Polihalogenated indoles Lipopeptides microcoline B Pyrroles Methylicosadienoic acid Source Streptomyces aureoverticillatus Rhodophyllis mambranacea Cayano Bacteria Cephalosporium acremonium Cambastela axinellida Activity Anti-tumor Anti-fungal Inhibit cell division Anti-Bacterial Larvicidal Reference Mitchell et al. 2004 Brenman & Erickson, 1978 Takamatsu S et al, 2004 K. Manimegalai1 et al, 2013 (Joseph elvin & A. P. Lipton, 2004) Table 1: Marine isolated Secondary metabolites and there sources. 2. Marine Sources of Secondary Metabolites Marine ecosystem has wide range of biodiversity. Each organism has different characteristics and it produce different secondary metabolites in response to its environment. Following are some of the marine sources for secondary metabolite production (Francesco Pietra, 1997): 1. Marine Isolated Bacteria a. Actinomycetes b. Cyano-Bacteria c. Archae-Bacteria 2. Euglenoids 3. Diatoms 4. Diano-flagellets 5. Marine Fungi 6. Green Microalgae 7. Sponges 8. Many more These are some of the potential sources of marine secondary metabolites because of their anti-fungal, anti-bacterial (K. Manimegalai1 et al, 2013), anti-tumor, anti-oxidant and anti-inflammatory (Bhimba B Valentin et al, 2011) activities. We will discuss only major three classes. 3. Secondary Metabolites from Marine Sponges Sponges are structurally diverse and biologically active (Julijana Ivanis evic et al, 2010) group of invertebrates in marine ecosystem. They are sessile organisms that are present on the rocks or at the sea bed. Studies have showed the sponges are potent producer of secondary metabolites that may be of great industrial importance. Following are some of the industrially useful characteristic of sponges due to secondary metabolites are explained: 3.1. Anti-Bacterial In a research it has been demonstrated that secondary metabolites produced by Dendrillu nigre, Axinellu donnani and Clathria gorgonoides marine sponges have bactericidal activity (Joseph elvin & A. P. Lipton, 2004). These sponges show high bactericidal activity against B. subtilis, P. aregenusa, E. coli and many other bacterial species. In another study it has been showed that Aplysina species i.e. Aplysina aerophoba and A. cavernicola produce aerophobin-2 and aplysinamisin-1 as brominated isoxazoline alkaloids (Düsseldorf & März 2009) which show great anti-bacterial activity. 3.2. Larvicidal Effects It has been seen that secondary metabolites produced by Clathria gorgonoides (Joseph elvin & A. P. Lipton, 2004) kill the larvae of mosquitoes. It may have great role in the control of malaria. Dendrillu nigre, and Axinellu donnani also show larvicidal activity. It was also be seen that Methylicosadienoic acid produce by Cambastela axinellida (Joseph elvin & A. P. Lipton, 2004) kills the larvae of beet army worm and corn root worm. 3.3. Ichthyotoxicity Secondary metabolites produced by certain marine organism protect the host organisms from predator’s i.e. antipredatory effects. D. niger produce large amount of toxins (Joseph elvin & A. P. Lipton, 2004) to prevent the predators. Two classes of terpenoid toxins are produced by sporangia sp. (Joseph elvin & A. P. Lipton, 2004). 3.4. Anti-Fouling activity One of the major problem faced by man-made marine infrastructure is biofouling. This biofouling interferes with the structure and cause the malfunction. Studies showed that sponges such as D. niger, Hyrtios sp., Aplisnella sp. and Xestospongia ashmorica etc (Joseph elvin & A. P. Lipton, 2004) show anti-bacterial, brineshrimp cytoyoxity and larvicidal activity. 3.5. Anti-tumor Activity Dysidea avara, is a Mediterranean sublittoral sponges that produce avarol and 5′-monoacetylavarol (Sonia De Caralt et al, 2013) at high level during spring – early summer. These secondary metabolite have anti-leukemia and anticancer activity 4. Secondary metabolites from Marine algae Secondary metabolites are the compounds produced during algal life cycle which don’t play a direct role in algal growth but are required for the betterment of algal life styles. These compound mostly play a role for the defense of the algal organism. The pathways for production of these secondary metabolites can be exploited by us as they play anti-microbial, anti-fungal, anti-parasitic, anti-tumor, anti-proliferative, anti-inflammatory and anti-biotic effects. 4.1. Halogenated compounds from marine algae These are the compounds which contain highly active and functional halogen group (Cl, Br, F and Iodine). These compounds include peptides, indoles, polyketides, acetogenins and phenol. 4.1.1. Brown Algae Meroditerpenoid fallachromenoic acid, a terpene obtained from brown algae is reported to have anti-tumor effects against P388 Murine Leukemia cell line. This particular compound is separated from Sargassum fallax. 4.1.2. Red Algae C15 acetogenin en-ynes separated from Laurencia glandulifera have cytotoxic effects against colorectal adenocarcinoma (HT-29), mammary adenocarcinoma (MCF-7) and prostate adenocarcinoma (PC-3).(M.T. Cabrita et al, 2010) 4.2. Metallothioniens Metallothioneins are the cysteine rich low molecular weight proteins that play a detoxification role in organisms by binding to heavy metals through their Thiol group.In algae class 3 of metallothionein is reported to exist.one such protein has been successfully extracted from Phaeodactylum tricornutum, a marine diatoms. This proteins induces tolerance against high toxic levels of cadmium. (E torres et al 1997). 4.3. Biogenic Anti-fouling agents Solid metallic surfaces when exposed to seas water undergo many changes because of physical, chemical and biological activity. Marine living organism like barnacles, oysters, tunicates, bryozoan and microbial slimes are among the leading causative agents. Many macro algae that live in euphotic zone are reported to produce fatty acids, lippopeptides, amides, alkaloids, pyroles, steroids and lactones. These compounds are immiscible in water and remain in a layered form without providing any environmental hazard.(Punyasloke B and Phillip C wright, 2004) 4.4. Anti-bacterial agents Some metabolites produced by marine algae have allelopathic effects i.e they affect the growth of other organisms in surrounding. One such compound has been isolated from red algae species Delisea pulchra. Chemically this compound falls under the category of furanones and is reported to inhibit growth of 119 marine bacterial strains. (Ria Meximilien et al, 1998). 4.5. Anti-tumour agents The chemical compounds known as Fucoidans (marine algal polysaccharide) obtained from Sargassum thunbergii has been reported to have anti-tumor activities against Ehlrich ascities carcinoma. The functional group of this compound is L-fucan sulphate. It is co-activator of reticulo-endothelial system and potent activator of macrophages. (Xue, Meilan, et al, 2012) 4.6. Anti-inflammatory agents Water soluble extracts that are crude in nature obtained from brown alga Turbinaria ornate acts an anti-oxidant and anti-inflammatory. Similarly pheophytin obtained from edible green algae Enteromorpha prolifera also act as antiinflammatory. (Yasuji Okai, et al 1997) (subash anthani et al 2004) 5. Secondary metabolites from Marine Bacteria Bacterial metabolism can be classified into three major categories: the kind of energy used for growth, the carbon source, and the electron donors used for growth. Pathogenic bacteria are capable of exhibiting various types of metabolism. Metabolites, the intermediates and products of metabolism, are typically characterized by small molecules with various functions. Metabolites can be categorized into both primary and secondary metabolites. These metabolites can be used in industrial microbiology to obtain amino acids, develop vaccines and antibiotics, and isolate chemicals necessary for organic synthesis. 5.1. Production and uses Secondary metabolites are typically organic compounds produced through the modification of primary metabolite synthases. Secondary metabolites do not play a role in growth, development, and reproduction like primary metabolites do, and are typically formed during the end or near the stationary phase of growth. Many of the identified secondary metabolites have a role in ecological function, including defense mechanism(s), by serving as antibiotics and by producing pigments. Examples of secondary metabolites with importance in industrial microbiology include atropine and antibiotics such as erythromycin and bacitracin. Atropine, derived from various plants, is a secondary metabolite with important use in the clinic. Atropine is a competitive antagonist for acetylcholine receptors, specifically those of the muscarinic type, which can be used in the treatment of bradycardia. Antibiotics such as erythromycin and bacitracin are also considered to be secondary metabolites. Erythromycin, derived from Saccharopolyspora erythraea, is a commonly used antibiotic with a wide antimicrobial spectrum. It is mass produced and commonly administered orally. Lastly, another example of an antibiotic which is classified as a secondary metabolite is bacitracin. Bacitracin, derived from organisms classified under Bacillus subtilis, is an antibiotic commonly used a topical drug. Bacitracin is synthesized in nature as a non-ribosomal peptide synthetize that can synthesize peptides; however, it is used in the clinic as an antibiotic. 5.2. Erythromycin Tablets Erythromycin is an example of a secondary metabolite used as an antibiotic and mass produced within industrial microbiology.Since the discovery of penicillin in 1928 (Fleming, 1929), intensive studies, mainly on soil-derived bacteria and fungi, demonstrated that microorganisms are a rich source of structurally unique bioactive substances (Fenical, 1993). The increasing need for new antimicrobial agents able to control emerging diseases or resistant strains of microorganisms inspired a growing number of research groups to explore the oceans for new bioactive compounds. Throughout the years, extensive screening programs were developed worldwide and great efforts have been devoted aiming of the isolation of new metabolites from marine microorganisms. 5.3. Other drugs Marine microorganisms are often taxonomically unique, which makes them interesting as potential sources of new drug leads. One of the major areas of research on marine natural products is devoted to the discovery of new anticancer drugs. In 1997, a novel depsipeptide named thiocoraline was isolated from the mycelial extract of the bacterium Micromonospora marina associated with a marine soft coral in the Indian Ocean. Thiocoraline inhibited DNA polymerase-α and is currently in preclinical phase by the pharmaceutical company PharmaMar (Romero et al., 1997; Newman and Cragg, 2004). Marine-derived bacteria constitute a promising source of unique metabolites with considerable pharmaceutical and therapeutically potential. Common biological assays usually focus on antimicrobial and cytotoxic activities as demonstrated throughout the literature. Whereas more effective and safe drugs in the field on infectious diseases and cancer are certainly needed, many other pharmacologically active compounds may be overlooked. Thus, it is suggested to broaden biological screens for the discovery of exceptional and rarely investigated biological activities, which may be important for the therapy of chronic diseases. Examples mentioned in this review include the potent PTP1B inhibiting activity of aquastatin A (101) which may be a promising therapeutic agent for treatment of type 2 diabetes and obesity, as well as the carcinogen metabolizing enzymes modulatory activity of chromanone A (100), which could be helpful in preventing the initiation stage of carcinogenesis. Such activities trigger the continued interest in marine microbial natural products and reflect the need for more intensive investigation of their chemical and pharmacological property. 5.4. Prodiginines Red-pigmented prodigiosin compounds were first isolated from the ubiquitous bacterium Serratia marcescens and identified as secondary metabolites. The common aromatic chemical structure of these pigmented compounds was first named prodiginine by Gerber [6] (Figure 1). Prodigiosin was the first prodiginine for which the chemical structure was determined [7]. The name “prodigiosin” has been attributed to the isolation of prodigiosin from Bacillus prodigiosus bacterium (later renamed Serratia marcescens) [8], which was historically famed for the mysterious “bleeding bread” report [9, 10]. Prodiginines share a common pyrrolyldipyrromethene core structure and have a wide variety of biological properties, including antibacterial, antifungal, antimalarial, antibiotic, immunosuppressive, and anticancer activities [9, 11]. Such properties potentially make them one of the most powerful research tools in the past decade. 6. Secondary metabolites from marine fungi Fungi produce a multitude of bioactive compounds. The increasing number of fungal genome sequences, demonstrate the biosynthetic potential of fungi. The genes required for the biosynthesis of secondary metabolite are clustered. 6.1. Endophytic fungi Endophytic fungi form association with the plants and it alters the mechanisms of host and induce the production of secondary metabolites. The symbiotic relation helps the fungi to get nutrition while the plants use the fungi for defense (Samual et al, 2011). 6.2. Anti-microbial agents Triazole an antimicrobial compound, obtained from sponge associated marine fungi. This compound is used for the treatment of skin infection. Trizole is also used nowadays as agent for wound dressing to prevent bacterial and fungal infection (Amber et al, 2004). 6.3. Anti-tumor agents: The extracts obtained from Penicillium brevicompactum .Are reported to have cyto-toxic effects against six tumor cell lines Marine fungi produce novel compounds because of their ability to survive under condition like high salinity, temperature and high pressure.(samual et al, 2011). 6.4. Anti-inflammatory Pencillinolide is anti-inflammatory metabolite that is isolated from the penicillin species.(Perry et al,2013). 6.5. Novel compounds A new sesquiterpenoid compound, was isolated from the culture of the mangrove fungus. Microsphaeropsis sp was used to isolate a sesquiterpenoid compound, that microsphaeropsisin A (Shao C et al, 2009). Halovirs are the peptides (A-E) that are isolated from the fungus scytalidium. It has the anti-viral activity and used to prevent and inhibit the HSV infection. (herspes simplex virus) (John et al, 2001). 6.6. 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