REEBOPS LAB REPORT LAURA CAPPS FEBRUARY 18, 2013 INTRODUCTION “I have my mom’s eyes and my dad’s ears.” “Well, I have my dad’s hair and my mom’s nose.” Statements like these are common for children to make as they progress through school. They begin to compare themselves to other students and to their family members. Observations lead to questions such as why there are differences between people, even in the same family. These are questions that deserve answers. The answers to these questions are found in the realm of genetics, a subject many elementary teachers may not expect to cover. While the fine details of genetics may be too difficult for younger children, the basics are very accessible to them. In order for teachers to be able to answer the questions their students may have, the teachers themselves need to have a solid understanding of the subject. They also need to understand how to make the material relatable to their young students. Our Reebops experiment is perfect for both of these goals. This lab ensures that we get a lot of practice with crosses between two organisms, both monohybrid and dihybrid crosses. By performing the crosses, we are allowed to take the abstract ideas learned in class and apply them to an actual situation. We can go through the process step by step and see how certain outcomes came to be. The processes of sexual reproduction and independent assortment become accessible, which increases understanding. When someone understands a concept well, they are able to explain it well. As teachers, explaining is our job. The Reebops lab is also a good way to explain genetics to elementary children. Reebops are easy and cheap to make, have a short reproductive cycle and can be easily manipulated by children. Using paper chromosomes, students can actually go through the process of choosing the genotype of their Reebop and build their own Reebop, like we did in lab. Punnett squares can also be introduced as a way to predict the possible outcomes of the chromosome selection. Prediction is a big part of the elementary science standards and genetics is a prime subject to practice probability and prediction. Part of predicting is formulating hypotheses. This lab required four hypotheses, since there were four sets of data to analyze. For the first set of data, concerning the trait for antennae, my hypothesis was that this trait is autosomal, meaning it is found on a chromosome that does not determine sex of organism, and undergoes the process of independent assortment. My hypothesis for the next set of data, the trait for number of body segments, was that this trait also was autosomal and undergoes the process of independent assortment. However, this was a hypothesis that needed to be revised. I will further discuss the revision in the Conclusions section of this paper. The third set of data focused on the traits for tails and ears. My original hypothesis for these traits was that they were both autosomal and undergo the process of independent assortment. This hypothesis also needed revision and will be discussed in the Conclusion section. The fourth and final set of data focused on the traits for leg color and number of eyes. My hypothesis for this set of traits was that both traits were autosomal and undergo independent assortment. The basis for each of these hypotheses comes, in part, from work published in 1866, before DNA was even known to exist. An Austrian monk and mathematician named Gregor Mendel did great work in the field of genetics, doing crosses of pea plants. Similar to the crosses performed in this lab, he focused on traits that only had two clear cut outcomes, such as round or wrinkled peas and purple or white flowers. The result of his work resulted in the formulation of the principles of independent assortment and segregation. Both principles were applied in this lab. The principle of segregation, stating that sexually reproducing organisms have two alleles that separate during the production of gametes, was applied every time we did a cross of two organisms. In the resulting offspring, there was only one allele from each parent. The principle of independent assortment, stating that each pair of alleles on homologous chromosomes is distributed independently from every other pair, is a key element in every hypothesis. Through his work, Mendel discovered that the placement of alleles into gametes is random and is not influenced by the placement of other alleles. This principle is important in explaining why there can be multiple outcomes for one cross and therefore is included in every hypothesis. Every hypothesis also predicts that the traits being worked with are autosomal, meaning they are not found of the chromosomes that control the sex of the organism. This is specified because there are traits that are found on only the sex chromosomes, the X and Y chromosomes in mammals. The expression of these sex-linked traits can be different than the expression of autosomal traits. One purpose of this lab is to determine which traits are sex-linked and which are autosomal based on provided information. Because there is only one pair of sex chromosomes and multiple pairs of autosomal chromosomes, there was a greater chance that the traits would be autosomal rather than sex-linked. Therefore, each original hypothesis states that the traits are autosomal rather than sex-linked. METHODS To test these hypotheses, I had to use a combination of tools. I used information given to me in my lab packet, Punnett squares and chi-squares. The information in the lab packet was the traits to test, the phenotypes and genotypes of the parents and the observed number of grandchildren or F2 generation for each trait. The data was sorted by trait observed, gender and variation of the expressed trait. For example, I was told that 127 females had 2 body segments. In order to test whether each trait was indeed autosomal and underwent independent assortment, I needed to first use Punnett squares to determine the probability of each possible phenotype for each trait. For each trait, the parent, or P1, generation was crossed first resulting in the F1 generation. Then the F1 generation was crossed resulting in the F2 generation. The Punnett squares gave me the expected ratios for each genotype and phenotype of that particular trait. I used the expected phenotypic ratios and the F2 generation information provided to me to create chi-squares. The chi-squares are what I used to test the hypotheses. They are used to determine whether or not a hypothesis should be rejected or accepted, based on the p-value that is produced as a result of completing the chi-square. I completed a chi-square for each hypothesis and used that to determine if my hypothesis should be revised or not. RESULTS *See attached Data Tables, Punnett Squares and Chi-Squares Of the four crosses, two were monohybrid crosses, meaning there was only one trait on which I focused, and two were dihybrid, meaning that there were two traits on which I focused. The first monohybrid cross focused on the trait for antennae. After crossing the P1 generation, the F1 phenotypic ratio was 4/4 or 1, meaning that all offspring had the same phenotype. After crossing the F1 generation, the phenotypic ratio was 3:1, meaning three of four offspring have the same phenotype while 1 is different. The chi-square value for this cross is 0.857. Using the degrees of freedom, which was 1, and a chi-square table, the p-value was determined to be greater than 0.30. The second monohybrid cross focused on the trait for number of body segments. Crossing the P1 generation resulted in an F1 phenotypic ratio of 4/4 or 1; crossing the F1 generation resulted in an F2 phenotypic ratio of 3:1. These results were consistent with the first monohybrid cross. However, the chi-square value for this cross was 158.096 and the p-value was less than 0.01, even with the same degrees of freedom as the first cross. Because this p-value did not support my hypothesis, I had to revise it and create another Punnett square and chi-square for this trait. The revised cross of the P1 generation produced an F1 phenotypic ratio of 2:2; a cross of the new F1 generation produced an F2 phenotypic ratio of 1:1:1:1. The revised chi-square had a value of 0.372. The degrees of freedom was 3 and the p-value was greater than 0.30. The first dihybrid cross focused on the traits for the tail and ears. The crossing of the P1 generation resulted in a phenotypic ratio for the F1 generation of 16/16 or 1. The crossing of the F1 generation resulted in a F2 phenotypic ratio of 9:3:3:1. The chi-square value for this cross was 361.112 with a degrees of freedom of 3. The p-value was less than 0.01. As with the second monohybrid cross, I had to do a revised version of this cross, resulting in a second Punnett square and chi-square. The second cross of the P1 generation resulted in an F1 phenotypic ratio of 8:8. The second cross of the F1 generation resulted in a phenotypic ratio for the F2 generation of 3:3:1:1 for females and 3:3:1:1 for males. The new chi-square value was 5.801 with a degrees of freedom of 7. The p-value was greater than 0.30. The second dihybrid cross focused on the traits for leg color and number of eyes. After crossing the P1 generation, the F1 phenotypic ratio was 16/16 or 1; after crossing the F1 generation, the phenotypic ratio for the F2 generation was 9:3:3:1. The corresponding chi-square had a value of 2.421 and the degrees of freedom was 3. Therefore the p-value for this cross was greater than 0.30. CONCLUSIONS After completing all of the Punnett squares and chi-squares, I had enough information to determine whether my initial hypotheses were supported or not. The results were mixed. Half were supported and half were not. My hypothesis that the trait for antennae is autosomal and undergoes independent assortment was supported. After completing the chi-square, I had a pvalue of greater than 0.30, which falls under the accept portion of a chi-square table. The F2 data makes sense for this cross because I know that for autosomal traits, the F2 phenotypic ratio is 3:1, three with the expressed dominant trait for every one with the expressed recessive trait. The F2 numbers demonstrate this ratio well. 615 males with blunt antennae is close to three times as large as the 197 males who had sharp antennae. It also makes sense that there are two different phenotypes because of inheritance and the principle of segregation. Inheritance is the fact that parents pass down alleles to their offspring through their gametes, which are then combined during fertilization. The phenotypes of the offspring depend on the alleles passed onto them from their parents. Segregation states that alleles separate from each other in the formation of gametes. Because of this principle and inheritance, parents can produce offspring that are either phenotypically different or phenotypically similar to them. My second hypothesis, that the trait for number of body segments is also autosomal and undergoes independent assortment, was not supported. After completing the chi-square for this hypothesis, I had a p-value of less than 0.01 which falls under the reject category of a chi-square table. The F2 data did not make sense knowing that autosomal traits should have an F2 phenotypic ratio of 3:1. The F2 data did not represent this ratio; it had a 1:1 phenotypic ratio. So I revised the hypothesis to say that the trait for number of body segments is sex-linked and undergoes independent assortment. This hypothesis was supported; the p-value for the new chisquare was greater than 0.30 and therefore accepted. I know that the F2 phenotypic ratio for a sex-linked trait is 1:1:1:1, with each gender having one of each phenotype. The F2 data matched this ratio. The same principles of inheritance and segregation applied to this hypothesis just as they did to the hypothesis about antennae. The third hypothesis, stating that the traits for tails and ears were both autosomal and undergo independent assortment, was also not supported. After completing the chi-square for this cross, the p-value was less than 0.01 and therefore rejected. The F2 data did not make sense in the light of the rules of genetics because for autosomal traits, the F2 phenotypic ratio for two traits should be 9:3:3:1. However the given data for tails and ears do not match up with this ratio. So I revised my hypothesis to state that the trait for tails is autosomal and the trait for ears is sexlinked. I formulated this hypothesis based on the fact that the phenotypic ratio for an autosomal trait is 3:1 and 1:1 for a sex-linked trait. I combined all of the F2 data for the tails and found a ratio of curly to straight that equaled 3:1. I then added the F2 data for the ears and found a ratio of ears to no ears that equaled 1:1. Therefore, I determined that ears were sex-linked and tails were autosomal. I tested this hypothesis and found that it was supported. The p-value calculated in the revised chi-square was greater than 0.30 and therefore accepted. The F2 data now made sense because the F2 phenotypic ratio for a dihybrid cross with one autosomal trait and one sexlinked trait is 3:3:1:1 for females and 3:3:1:1 for males. The F2 data matched up with this ratio. As with the monohybrid crosses, the principles of inheritance and segregation still apply to both of these traits. The fourth and final hypothesis, stating that the traits for leg color and number of eyes are both autosomal and undergo independent assortment, was supported. The p-value was greater than 0.30 and therefore accepted. The data also made sense because the observed F2 data was in the ratio of 9:3:3:1 which is the F2 phenotypic ratio for autosomal traits. The principles of inheritance and segregation still apply for these two traits as well. In every experiment, there is room for error. In this experiment, there was the chance of mathematical error and data error. This experiment involved a lot of math, much of which included rounding. Because I did not use exact numbers, there was a margin for error. There also was the possibility of miscalculations, like addition errors. Error can also be present in the data I used. The data was given to me and could contain error for which I could not resolve. A third source of error could come from the nature of this lab. Our experiment is a model of genetic inheritance and therefore has limitations. Our model is simplified and cannot account for every aspect of the complex process of inheritance. Inheritance is the main topic of this lab. After completing this lab, it is apparent that there is an inheritance mechanism which allows traits in occur in the parents to be passed down to the offspring. Every offspring has traits that occur in either parent or grandparent. There are two options for each trait and one of those options appears in every offspring; there is no random third option that appears. The data shows that there is mechanism that allows traits to be passed down from generation to generation. As stated before, for each trait examined, there are two phenotypic outcomes. The evidence suggests that these two outcomes remain distinct from each other; there is no blending of traits. Blending can be found in humans; there are many different shades of hair color, not just blonde or brunette. Blending does not appear to occur with these traits with Reebops. For example, there can be red legs or blue legs. If blending occurred, there could be offspring with purple legs, the combination of blue and red. However, there are no offspring with purple legs. The same is true for every other trait examined. The alleles that transmit the physical traits remain the same from generation to generation. If the trait for antennae is represented by the letters B and b in the P generation, the same letters will represent the trait in the F1 generation and the F2 generation. The combination of alleles can vary from generation to generation but the alleles themselves do not change. As discussed in the Introduction section, Gregor Mendel’s work resulted in the principles of segregation and independent assortment. The principle of segregation states that sexually reproducing organisms have two alleles that separate during the production of gametes. In the resulting offspring, there was only one allele from each parent. There is evidence in my data that supports this. Each offspring has one allele from each parent, not two. The principle of independent assortment states that each pair of alleles on homologous chromosomes is distributed independently from every other pair. Evidence for this principle can be found in the dihybrid crosses. If independent assortment did not occur and alleles had a specific order, such as dominant alleles on the left and recessive alleles on the right during Metaphase I, the combinations Le and El would never occur. However, both combinations do occur in the data. Therefore, independent assortment must occur. Both parents contribute to the offspring; each parent contributes one allele per trait. Both parents may not contribute to the phenotype of the offspring but both contribute to the genotype. If one parent gives a dominant allele and one gives a recessive allele, only the dominant allele is expressed in the phenotype; however, the recessive allele is important when the offspring reproduces. The offspring can pass on the recessive trait when it reproduces. There were a few rules of inheritance for which I had to make slight exceptions. Firstly, the F2 data did not match exactly with the expected F2 phenotypic ratios; however the numbers were close. I had to do this because this data was the only data with which I could work. If I did not make this exception, I could not have proceeded with the lab. I also had to ignore the possibility of mutations or other genetic malfunctions that could account for the F2 data. I had to do this because I had no information about any mutations or malfunctions. I only had the provided data and had to base my results and conclusions off of the information given to me.