Biology 2164 - Microbiology Tulsa Community College Metro Campus Instructor: I. Prof Judyth Gulden judyth.gulden@tulsacc.edu Office phone: 918-599-0508 Text: 918 261 6624 Office hours: by appointment Course Title and Number: Biology 2164 – Microbiology a. Class Times: M/W 5:30-6:50 lecture G27 W 7-9:50 lab 629 II. Course Pre-requisite: BIO 1224 and CHEM 1215 or CHEM 1114 III. Course Description (see catalogue): General microbiology with emphasis on fundamentals of morphology, physiology, and growth related activities of pathogenic and nonpathogenic disease producing organisms. Principles involved in susceptibility and resistance to infections and the uses of immune sera and vaccines. Lecture: 3 hours. Laboratory: 3 hours. IV. Course Purpose a. Learning Objectives V. Describe the structure, reproduction, metabolism and disease processes of the major groups of bacteria and viruses. Describe the major groups of bacteria from their microscopic, cultural, and diagnostic standpoints. Explain host-microbe interactions including normal flora, transients and pathogens. Outline the nonspecific and specific host defense mechanisms and the roles of various cells and chemicals involved. Describe the nutritional requirements of microbes and the consequent relationships to the disease process. Describe the diseases, transmissions, epidemiology, culturing and biochemical characteristics of select genera and species of bacteria. Perform the laboratory skills of general microbiology, including microscopy, staining, aseptic technique, transfer, culturing and the use of diagnostic media. Relate current trends in microbiology, from analysis of current research in recombinant DNA to gene therapy, DNA sequencing, and monoclonal antibodies. Demonstrate aseptic technique as it relates to personal life, laboratory procedures, and the medical setting. Explain microbial growth processes, their requirements for growth, the mathematics of microbial growth, and the control of microbial growth in the laboratory, medical, and personal setting. Student Learning Outcomes The following are specific learning outcomes for the student taking this class: Describe and practice laboratory safety guidelines relating to working with chemicals, microorganisms, body fluids and/or dissection. Define and correctly use scientific terminology in regard to microbiological organisms and processes. Synthesize information, think critically and solve critical thinking problems; write clear, well organized answers to assignments that demonstrate synthesis. 1 Biology 2164 - Microbiology Tulsa Community College Metro Campus VI. Work well independently and show self-direction and motivation Understand and follow directions properly Show proficiency in taking exams, by responding to questions quickly and accurately, effectively handling the pressure of a timed exam. Assess personal needs in regard to study time and methods, and accept personal responsibility for the learning process. Apply principles of scientific inquiry, differentiate a theory from a hypothesis, and differentiate fact from opinion in regard to microbiological sciences. Assess and describe aspects of sustainability, including economic, societal and environmental factors, especially in relation to microbiological systems. Course Information Textbooks and Materials: All materials can be purchased at the bookstore. Required Books and Materials Microbiology with Diseases by Body System 3e – Bauman, Benjamin Cummings, ISBN 9781256066484 (Custom Edition) Microbiology Laboratory Theory and Applications – Leboffe & Pierce, 9780895829672 (Custom Edition) Students must have goggles and lab coats for all labs. Students who do wear goggles and/or lab coats during labs will not be allowed to participate in the lab. Gloves are optional. Student must have a box of microscope slides, a lab notebook, and a black Sharpie permanent marker. VII. Instructor Support Prof Gulden is available by phone, text, email or you can schedule an appointment. You are encouraged to call the Instructor to discuss the material or any other items concerning the course. Email will be checked daily, Monday through Friday from 9 am to 6 pm CST. Please note that if you send an email after those hours, it may not be addressed until the following business day (Monday-Friday). This includes requests concerning exams or online assignments. When you email please put your name, course and section number in the subject line of the email. This helps the instructor identify emails that need immediate attention. For example: Guldenbio1224section21032098 VIII. IX. Safety policy: Students must wear goggles and protective gloves during labs. Students not wearing goggles will not be allowed to participate in the designated laboratory exercise. Lab coats are required. Teaching Methods: Lecture, videos, interactive and lab exercises, seminars, research activities, fieldtrips, and occasional guest speakers. The course material will be divided into units representing closely related topics. Lecture will introduce the major concepts. Each student is responsible for learning all assigned materials regardless of whether they are presented through lecture or laboratory exercises. Lecture notes will be posted on blackboard. 2 Biology 2164 - Microbiology Tulsa Community College Metro Campus Once each week students will participate in a Hands-On experience in the laboratory. Prior to any class meeting, it is each student's responsibility to have read the appropriate assigned material. X. ADA Policy: Students with special needs: Students with documented disabilities are provided academic accommodations through the disAbled Student Resource Center or Resource Center of the Deaf and Hard of Hearing. If any student is in need of academic accommodations from either office, it is the student’s responsibility to advise the instructor so an appropriate referral can be made no later than the first week of class. Students may also contact the disabled Student Services Offices directly. Academic Accommodations will not be provided unless appropriate documentation is provided to the disAbled Student Services Offices to support the need. XI. DISABILITY RESOURCES: It is the policy and practice of Tulsa Community College to create inclusive learning environments. Accommodations for qualifying students in compliance with the Americans with Disabilities Act (ADA) and Section 504 of the Rehabilitation Act are available. To request accommodations, contact the Education Access Center (EAC) at eac@tulsacc.edu or call (918) 595-7115 (Voice). Deaf and hard of hearing students may text (918) 809-1864. XII. Evaluation Techniques: There will not be separate lab exams. Laboratory topics including applied activities will be included in lecture exams. A laboratory practical will be part of the overall comprehensive final exam at the end of the semester. There will be 4 examinations, each worth 100 points and 1 final exam worth 150 points. The number of tests may be changed at the Instructor’s discretion. The final exam will be comprehensive and cover all concepts and materials discussed in class and lab (see above concerning lab practical exam). There will be 8 quizzes worth 10 points each and 15 (weekly) Lab Assignments worth 15 points each. There will be one journal article review required. This will be discussed by week 3 and due by the date set out in the schedule. This is worth 80 points. Details to be provided during the lecture period. There will be 2 case study reports to be written up by the student following a prescribed format and handed in on the dates set out in the schedule. These are worth 50 points each. A Lab Unknown Report will be handed in on the date set out in the schedule. It is worth 80 points. Participation grades will be available for completion of all of the required work for the week. This includes completion of laboratories. These are worth 5 points per week. Note that there is no partial credit for participation. A schedule of activities and requirements are set out in the schedule below. XIII. Make up policy: Lecture exams may not be made up. In the event that an exam is missed, the score on the next exam will be doubled. If the next exam is the final exam the score of the previous exam will be doubled and substituted for the missed exam. The same method will be used for missed quizzes. Only one quiz or exam (not one of each) may be made up during the semester. The student must inform the instructor BEFORE the date of the exam or quiz if they are going to miss it. This may be done by email or phone. If this is not done prior to the date of the exam or quiz then the student will receive a zero and may not take advantage of the makeup policy. 3 Biology 2164 - Microbiology Tulsa Community College Metro Campus XIV. Assignment Presentation: All assignments are to be typed or in a format specified by the instructor. There are computers with word processing software available to any TCC student with a current ID. These are located in the General User Microcomputer Lab on all campuses. All graphs must be generated using graphing software (e.g. excel). All work must be in a format that is supported by Microsoft Office unless directed otherwise by the instructor. The IT helpdesk and Computer Lab Services are available to provide support to students and help them with technology related questions. XV. Late Laboratory and Short Assignments: Due dates are provided for all assignments. Late assignments will only be accepted up until the following class period. At that time, the assignment will lose 50% of the score. You may turn in assignments early. XVI. Cheating Policy: Anyone suspected of cheating runs the risk of failing the course. Anyone caught cheating will automatically fail the assignment. Repeated attempts at cheating will result in failing the course. Cheating does include plagiarism. Plagiarism is claiming, indicating, or implying that the ideas, sentences, or words of another writer are your own; it includes having another writer do work claimed to be your own, copying the work of another and presenting it as your own, or following the work of another as a guide to ideas and expression that are then presented as your own. Instructor reserves the right to assign a failing grade at the end of the semester to any student who is seen cheating throughout the semester. The instructor may or may not have a prior conference with the student. XVII. Grades: All scores will be posted on Blackboard. Your semester grade will be based on your total points earned at the end of the semester. (Take total earned and divide by total possible to get percentage) Lecture exams: 4 X 100 points Lecture final exam (comprehensive) Quizzes 8 X 10 points Lab Assignments: 15 X 15 points Unknown Lab Report Case Studies 2 X 50 Journal Article Review x 1 Participation 5 X 15 Total 90% 80% 70% 60% - 100% - 89% - 79% - 69% <59% = = = = = = = = = 400 150 80 225 80 100 80 75 1190 A B C D F Exams and assignments will not be returned to students. A student may make an appointment to look over their exams/assignment at any time before finals weeks. You may also make copies of your assignments prior to turning them in. 4 Biology 2164 - Microbiology Tulsa Community College Metro Campus XVIII. Other Policies and Requirements: Attendance Policy and Late Arrivals The likelihood of succeeding in this course without your attendance is minimal. If you exceed more than 2 unplanned absences from classes without contacting the instructor prior to the scheduled class you may be dropped from the class at the instructor’s discretion. For late arrivals see Inappropriate Behavior in the Classroom below. Announcements pertaining to course activities will be made at the beginning of lecture and posted on Blackboard. The student is responsible for obtaining all information made available during the meeting periods from other students if they do not attend. All handouts, when possible, will be posted on Blackboard. It is your responsibility to acquire them. Laboratory exercises, class presentations and fieldtrips cannot be made up. Last day to withdraw: Make sure you note the date. It is the student’s responsibility to make sure they withdraw. AW will not be given in lieu of forgetting to withdraw in time. Cellular Phones and Pagers Turn them off during lecture and laboratory! If for some reason you expect an emergency situation to arise, please turn off the ringer and take the call outside of class. Please be respectful of other students. Cell phones MUST NOT ring or be answered during laboratories or exams! Internet Accessibility: All TCC students have access to computers and the Internet in the General User Computer Labs on all four campuses. Public libraries are an additional location. Inappropriate Behavior in the Classroom – Increasingly many students display inconsiderate behavior towards the instructor and other students. This will not be tolerated. Initially the instructor will speak to the student individually. If a change in behavior is not observed, the student will be dropped from the class. Such behavior includes disruptive late arrivals (repeated arrivals more than 7 minutes after a session begins without prior notification is considered disruptive), excessive talking during lecture, repeated leaving and returning to the room during lecture, repeated cell phone interruptions, and rudeness towards the instructor. Changes in this Syllabus The policies and statements contained in this syllabus may be altered, added to, or deleted at any time by the instructor of the class. This will be done by typed supplements or amendments given to the student and/or posted on blackboard. Course Withdrawal: The deadline to withdraw from a course shall not exceed 3/4 the duration of any class. Contact the Counseling Office at any TCC campus to initiate withdrawal from a course ('W' grade) or to change from Credit to Audit. Check the TCC Academic Calendar for deadlines. Students who stop participating in the course and fail to withdraw may receive a course grade of “F,” which may have financial aid consequences for the student. Communications: a. Email communications: All TCC students receive a designated “MyTCC” email address (ex: jane.doe@mail.tulsacc.edu). All communications to you about TCC and course assignments will be sent to your MyTCC email address; and you must use MyTCC email to send email to, and receive email from, the instructor regarding this course. b. Inclement Weather: TCC rarely closes. If extreme weather conditions or emergency situations arise, TCC always gives cancellation notices to radio and television stations. This information is also posted on the TCC website (www.tulsacc.edu). General Education Goals: General Education courses at TCC ensure that our graduates gain skills, knowledge, and abilities that comprise a common foundation for their higher education and 5 Biology 2164 - Microbiology Tulsa Community College Metro Campus a backdrop for their work and personal lives. TCC’s General Education goals are: Critical Thinking, Effective Communication, Engaged Learning, and Technological Proficiency. Classroom Etiquette: Open and mutually respectful communication of varied opinions, beliefs, and perspectives during classroom or online discussion encourages the free exchange of ideas that is essential to higher learning and to the ability to learn from each other. Use of any electronic device (including computers, ipads and smartphones) is at the discretion of the instructor. Syllabus Changes: Occasionally, changes to the syllabus may be necessary. Students will be notified of any changes to the syllabus in writing. Students with Disabilities: TCC provides accommodations for qualifying students in compliance with the Americans with Disabilities Act. For information, students may contact the disabled Student Resource Center, 918-595-7115, or the Resource Center for the Deaf and Hard of Hearing, 918-595-7428V, 918-595-7434TTY. Academic Dishonesty: Academic dishonesty (cheating) is defined as the deception of others about one’s own work or about the work of another. Academic dishonesty or misconduct is not condoned or tolerated at campuses within the Tulsa Community College system. Tulsa Community College adopts a policy delegating certain forms of authority for disciplinary action to the faculty. Such disciplinary actions delegated to the faculty include, but are not limited to, the dismissal of disrespectful or disorderly students from classes. In the case of academic dishonesty a faculty member may: o require the student to redo an assignment or test, or require the student to complete a substitute assignment or test; o Record a "zero" for the assignment or test in question; o Recommend to the student that the student withdraw from the class, or administratively withdraw the student from the class; o Record a grade of "F" for the student at the end of the semester. Faculty may request that disciplinary action be taken against a student at the administrative level by submitting such request to the Dean of Student Services. It is the student’s responsibility to ensure that they understand the meaning of plagiarism, how to avoid it and the consequences of any acts of plagiarism. Not understanding how to properly cite materials or use citation format does not provide an excuse for academic dishonesty. Institutional Statement: Each student is responsible for being aware of the information contained in the TCC Catalog, the TCC Student Policies & Resources Handbook, and semester information listed in the class schedule. All information may be viewed on the TCC website: www.tulsacc.edu 6 Biology 2164 - Microbiology Tulsa Community College Metro Campus FALL 2013 SCHEDULE OF READINGS AND ASSIGNMENTS Week of Aug 19 First day of class Lecture Laboratory & Assignments ADDITIONAL READINGS, QUIZ, TEST & Other Items Lab safety & introduction Basic Lab techniques & microscopy Ubiquity (2.1, 3.1) Lab – Exercise and p. 51, 125 Participation 1 All items, including labs must be submitted by Aug 26 at 5:30pm CST Aseptic Transfer (1.3) Simple Stain (3.4) Discuss Unknown Quiz 1 Lab – Exercise and p. 153 Participation 2 All items, including labs must be submitted by Sept 2 at 5:30pm CST Gram Stain (3.6) Acid Fast (3.7) Lab – Exercise and p. 165, 171 Participation 3 All items, including labs must be submitted by Sept 9 at 5:30pm CST Lab – Exercise and p. 175, 181 Participation 4 All items, including labs must be submitted by Sept 16 at 5:30pm CST Lab – Exercise and p 33,201, 215, 219 Participation 5 All items, including labs must be submitted by Sept 23 at 5:30pm CST Lab – Exercise and p. 79 Participation 6 All items, including labs must be submitted by Sept 30 at 5:30pm CST Syllabus Chp 3 – Cell Structure & Function Aug 26 Chp 4 – Microscopy, Staining & Classification Sept 2 Chp 5 – Microbial Metabolism Sept 9 EXAM 1 Chp 3-5 Chp 6 – Microbial Nutrition & Growth Sept 16 Chp 6 – continued Chp 7 – Microbial Genetics Capsule Stain (see pg 5) Endospore Stain (3.9) Quiz 2 Case Studies Assigned Streak Plate NA (1.4) Mannitol Salt (4.1) EMB (4.5) Hektoen (4.6) Sept 23 Chp 8 – Recombinant DNA Technology Thioglycollate Broth (2.6) Quiz 3 Journal Article Assigned Sept 30 Chp 13 – Viruses, Viroids, Prions Anaerobic Jar (2.7) Blood Agar (5.20) Oct 7 EXAM 2 Chp 6,7,8,13 Chp 19, 20, 21 Diseases by System Phenol Red Broth (5.2) MR-VP (5.3) Citrate (5.7) Quiz 4 Lab – Exercise and p. 235, 241, 261 Participation 8 All items, including labs must be submitted by Oct 14 at 5:30pm CST Oct 14 Chp 19, 20, 21 Diseases by System Catalase (5.4) Oxidase (5.5) Nitrate Agar (5.6) SIM Agar (5.17) Lysine Iron Agar (see Lab – Exercise and p. 245, 249, 255, 309 Case Study 2 due Participation 9 All items, including labs must be Lab – Exercise and p. 83, 325 Case Study 1 due Participation 7 All items, including labs must be submitted by Oct 7 at 5:30pm CST 7 Biology 2164 - Microbiology Tulsa Community College Metro Campus Week of Lecture Laboratory & Assignments ADDITIONAL READINGS, QUIZ, TEST & Other Items handout) Oct 21 Chp 19, 20, 21 Diseases by System Chp 24, 25 Diseases by System submitted by Oct 21 at 5:30pm CST Starch Hydrolysis (5.11Urease (5.12) Gelatinase (5.14) Lipase (5.16) Quiz 5 Lab – Exercise and p. 283, 287, 295, 303 Participation 10 All items, including labs must be submitted by Oct 28 at 5:30pm CST Oct 28 Chp 15 Innate Immunity Chp 16 Adaptive Immunity Eukaryotic Microbes (3.3) Lab Unknown Due Lab – Exercise and p. 143 Participation 11 All items, including labs must be submitted by Nov 4 at 5:30pm CST Nov 4 EXAM 3 Chp 19,20,21,24,25 Chp 17 Immunization & Testing Disk Diffusion (see handout) Blood Typing (8.6) Quiz 6 Lab – Exercise and p. 447 Participation 12 All items, including labs must be submitted by Nov 11 at 5:30pm CST Lab – Exercise and p. 325, 369 Participation 13 Journal Article Due All items, including labs must be submitted by Nov 18 at 5:30pm CST Lab – Exercise and p. 105, 375 Participation 14 All items, including labs must be submitted by Nov 25 at 5:30pm CST Participation 15 All items, including labs must be submitted by Dec 9 at 5:30pm CST Nov 11 Chp 18 Immune Disorders Chp 14 Infectious Disease and Epi Blood Agar – Throat swab (5.20) Snyder – dental caries (7.1) UV Light (2.11) Disinfectants (see handout) Kirby-Bauer (7.2) Quiz 7 Nov 18 EXAM 4 Chp 14,15,16,17,18 Chp 9 Controlling Microbial Growth Nov 25 Chp 9 – cont Chp 10 Antimicrobial Drugs No class on Wednesday Thanksgiving Break No lab Dec 2 Chp 10 Antimicrobial Drugs Dec 9 Open Quiz 8 FINALS & SEMESTER ENDS FINAL EXAM – Includes all chapters and laboratory work assigned 8