SYLLABUS FOR GENES AND BEHAVIOR EEOB 507/BIOL 495 AT – SPRING 2014 – 3 CREDITS Tuesdays and Thursdays from 1:10-2:30 in 334 Bessey Hall Description of the Course In this discussion-based course, we will examine the genetic underpinnings of animal behavior, and how behavior evolves on a genetic level. Topics will include aggressiveness, social behavior, personality, parental care, communication, mating behavior, novelty seeking behavior, and foraging. We will examine these behaviors at multiple levels, including genomics, population genetics, molecular genetics, epigenetics, endocrinology, and neurobiology. The course will primarily rely on readings from the primary literature, using examples from laboratory model organisms, animals in their natural habitats, and humans. There will be frequent readings from review papers, journal articles, and book chapters. Grades will be heavily based on participation in course discussions, student presentations, and an original research proposal. The course is open to graduate students and advanced undergraduates with previous coursework in animal behavior and/or psychology. If there is something you do not understand, it is your responsibility to come and talk to me about it right away so that you don’t fall behind. I am happy to work with you to make sure you get the most out of this course! Course goals and learning objectives - To understand the different ways in which genes can affect complex phenotypes, including behavior - To appreciate the importance of both genes and environment, and their interaction, in affecting behavior - To have a basic understanding of quantitative and molecular genetic techniques, including modern genomic approaches, for understanding the genetic basis of behavior - To be able to critically read and understand behavioral genetics papers from the primary literature - To understand how genes that underlie behavior can be deeply conserved across animals, but still evolve and contribute to the evolution of new forms of behavior INSTRUCTOR INFORMATION Instructor: Dr. Amy Toth Office: 309 Bessey Hall, Phone: 294-3121 Email: Contact me via email at amytoth@iastate.edu. Office hours: Wednesdays at 2 pm in my office 1 COURSE MATERIALS Reading: As a “Frontier” area in biology, there is still no suitable textbook for this course. We will mainly be reading book chapters, primary literature, and newspaper articles (for the latter, read with caution!). All of the readings are available through the Blackboard course site. Pdf files for each reading have been posted on this site. Keep up on the reading for this course! It is very important for understanding the material and your preparedness will affect your participation grade. Blackboard Learn resources: Blackboard Learn will be used to post the syllabus, assignments for readings, and grades for the course. The lecture presentations will be available on Blackboard Learn; these will sometimes be made available in advance. Note that even if the notes are available in advance some changes may be made after I upload the files. Students will be able to use their user ID and password to access information in Blackboard Learn. GRADING Your final grade in the course will be based on the following point allocations. There will be no extra credit. THING 2 Exams Attendance and Class Participation in Discussions Student-led paper discussions (2) Final Project Paper Final Project Presentation GRAND TOTAL POINTS PER 50 POINTS TOTAL 100 50 25 50 50 50 300 Exams The first exam will be held during regular class time, and the second will be during finals week. Both will be short answer and essay based. Exam questions will draw heavily from class discussions and lectures, but all of the readings and additional readings are also fair game. You will have 90 minutes to complete each exam. Make sure you make it to the exams, I cannot promise that make-up exams will be available. GENERAL COURSE POLICIES AND ETIQUETTE 1. Be punctual. This class is scheduled from 1:10 pm to 2:30 pm. We will begin promptly and will generally go for the entire 80 minutes. I expect you to be in your seats, awake, and ready to begin at this time, and for you to give me your undivided attention for the entire time. This means no phone calls, texting, rustling of papers, packing up early, etc.! 2. Be considerate to your classmates. Students should refrain from unnecessary use of electronic devices, chattering, whispering, note-passing, snoring (I hope not!) etc. Any student whose behavior is distracting to me or to the class will be asked to leave. 2 Academic Dishonesty The class will follow Iowa State University’s policy on academic dishonesty. Anyone suspected of academic dishonesty will be reported to the Dean of Students Office. http://www.dso.iastate.edu/ja/academic/misconduct.html Disability Accommodation Iowa State University complies with the Americans with Disabilities Act and Sect 504 of the Rehabilitation Act. If you have a disability and anticipate needing accommodations in this course, please contact (instructor name) to set up a meeting within the first two weeks of the semester or as soon as you become aware of your need. Before meeting with (instructor name), you will need to obtain a SAAR form with recommendations for accommodations from the Disability Resources Office, located in Room 1076 on the main floor of the Student Services Building. Their telephone number is 515-294-7220 or email disabilityresources@iastate.edu . Retroactive requests for accommodations will not be honored. Dead Week This class follows the Iowa State University Dead Week policy as noted in section 10.6.4 of the Faculty Handbook http://www.provost.iastate.edu/resources/faculty-handbook . Harassment and Discrimination Iowa State University strives to maintain our campus as a place of work and study for faculty, staff, and students that is free of all forms of prohibited discrimination and harassment based upon race, ethnicity, sex (including sexual assault), pregnancy, color, religion, national origin, physical or mental disability, age, marital status, sexual orientation, gender identity, genetic information, or status as a U.S. veteran. Any student who has concerns about such behavior should contact his/her instructor, Student Assistance at 515-294-1020 or email dso-sas@iastate.edu, or the Office of Equal Opportunity and Compliance at 515-294-7612. Religious Accommodation If an academic or work requirement conflicts with your religious practices and/or observances, you may request reasonable accommodations. Your request must be in writing, and your instructor or supervisor will review the request. You or your instructor may also seek assistance from the Dean of Students Office or the Office of Equal Opportunity and Compliance. Contact Information If you are experiencing, or have experienced, a problem with any of the above issues, email academicissues@iastate.edu. 3 Tentative Course Schedule This schedule is subject to change if it becomes apparent that we need to spend more or less time on a given subject. Reading assignments are also subject to change. (Class) Topic Reading Date Foundations (1) Intro to Course Pinker Jan. 14 (2) Exploring Gene-Behavior Relationships Sapolsky, Robinson 1, Jan. 16 Holden (3) Principles of Behavioral Genetics 1: Greenspan, Carroll, Jan, 21 Genetics basics review Leeper (4) Principles of Behavioral Genetics 2: Kyriacou, Willis-Owen Jan. 23 Forward and reverse genetic approach (5) Principles of Behavioral Genetics 3: Wright, Flint, Rietveld, Jan. 28 Twins, heritability, and whole genomes (6) Principles of Behavioral Genetics 4: Bell, Dobbs, Kang Jan. 30 Gene expression (7) What about the brain? Filling in the Landis, Schafer, Feb. 4 “black box” Thomson (8) The fallacy of eugenics Eggen, Severson, Feb. 6 Roubertoux Social influences on gene expression and behavior (9) GUEST LECTURE TBA Feb. 11 (10) GUEST LECTURE TBA Feb 13 (11) Acoustic communication in song birds WashU, Dong, Feb. 18 Clayton (12) Behavioral maturation in honey bees Dobbs, Alaux, Zayed Feb. 20 (13) Dominance in cichlid fish Renn, Shwartz, Feb. 25 Maruska (14) Epigenetics Hall, Miller, Goldberg Feb. 27 (15) Maternal Care in Rodents Weaver, Champagne, Mar. 4 Hurley (16) MIDTERM EXAM Mar. 6 The influence of genes on social behavior (17) Genotype-environment interactions Breed, Bendesky, Mar. 11 Bakermans (18) Courtship communication in fruit flies Greenspan, Wheeler, Mar. 13 Dickson (19) Monogamy in prairie voles Donaldson, Lim, Mar. 25 Vedantam (20) Social foraging in honey bees Ben-Shahar, Barron, Mar. 27 Angier (21) Aggression: amine genes = “mean” Alia-Klein, Horgan, Presenter Toth Toth Toth Toth Toth Toth Toth Toth Jennifer Jandt Adam Dolezal Karri, Jillian Toth Kaitlin, Giselle Rebecca, Megan Jessie, Amber Toth Jillian, Alex Heather, Eric Alex, Giselle Kaitlin, 4 Apr. 1 (22) Apr. 3 (23) Apr. 8 (24) Apr. 10 (25) Apr. 15 (26) Apr. 17 Apr. 22 Apr. 24 Apr. 29 May 1 May 6 genes? Speech in humans and animals and its roots Personality genes Sexuality in humans Evolutionary conservation of genes related to behavior Beyond nature vs nurture Final Presentations Final Presentations Final Presentations No class, guest lecture possible TBA FINAL EXAM, 12:00-2:00 Ferguson Enard, Yong, Fisher Bell 2, Okuyama, Kraus Horton, Bogaert, Alanko O’Connell, Toth, Katz Robinson 2, Robinson3, Tyson Megan Jessie, Amber Karri, Heather Rebecca, Eric Toth Toth Students Students Students **Papers due!** ** Note: The less technical, popular or new articles are underlined. Class Participation and Discussion Your attendance will be noted, so please let me know if you need to miss a class. All classes will involve discussions of the primary literature as well as the news articles. Coming prepared for these discussions by doing your reading, as well as noting questions or things that needed clarification, will contribute to better and more informed participation!! Student Led Paper Discussions Students will be responsible for “presenting” 2 papers per semester. Can work in groups of 2-3. I suggest pairing an undergrad with a grad. Read paper together and give an overview for the class. All students within a group should put in equal effort and all should try to speak and present roughly the same amount. Here are some suggestions about what you will present: 1) What was the major question? 2) What was the hypothesis or hypotheses being tested? 3) How were the hypotheses tested? 4) Show and interpret each figure. 5) Do the results support the hypothesis/es? 6) What are the main conclusions? 7) What was good about this study? 8) What could be improved about this study? 9) What would be a good follow-up study? Final Projects: Each student will independently come up with a behavior they are interested in and write a research proposal on how they would go about studying the genetics of this behavior. The projects will culminate in both a Final Paper (5 pages) and a Final Presentation. Students will need to consult with me about their idea during office hours or make a separate appointment. 5 Final Papers Papers will be written in the format of a research proposal. Students will be responsible for a literature search in which they review what is known about a particular form of behavior that has not yet been studied on the genetic level. Then, they will propose an experiment or set of experiments to examine some aspect of how genes relate to that behavior. A specific rubric for the proposal will be provided closer to the end of the semester. Final Presentations Each student will give a 15-20 minute presentation of their final project. More details will be provided on how to structure this presentation closer to the date. 6 7