SUPPLEMENTARY INFORMATION Depth (cmbsf) 0 0 10 20 30 Mn2+ ( M) Fe2+ ( M) Sulphate (mM) 40 0 20 40 60 80 100 120 140 0 20 40 60 80 100 120 100 363 365 371 383 387 389 391 200 300 400 500 Supplementary Figure S1. Depth profiles of pore-water geochemistry constituents 5 (sulphate, manganese and iron) of Baffin Bay sites. All sites except 365, 383 and 387 were described in detail elsewhere (Algora et al., 2013). 10 Supplementary Figure S2. Depth profiles of organic carbon content in the sediments measured as Total Organic Carbon (TOC) in weight % of all cores under investigation. 1 Core 363 Core 365 Core 371 15 Core 383 Core 387 Core 389 2 Core 391 Supplementary Figure S3. Photographs of the cores described in this study. 3 0 50 150 OTUs 150 0 50 OTUs 250 Site 365 250 Site 363 0 500 1000 1500 2000 2500 0 500 # Sampled seqs 250 Site 383 0 50 150 OTUs 250 150 0 50 OTUs # Sampled seqs Site 371 0 500 1000 1500 2000 2500 0 500 # Sampled seqs 250 0 50 150 OTUs 150 OTUs 250 Site 389 0 50 0 500 1000 1500 2000 2500 0 500 # Sampled seqs (cmbsf) 25 75 125 175 225 275 325 375 415 150 250 Site 391 0 500 . 1000 1500 2000 2500 # Sampled seqs 0 50 OTUs 1000 1500 2000 2500 # Sampled seqs Site 387 20 1000 1500 2000 2500 1000 1500 2000 2500 # Sampled seqs Supplementary Figure S4. Rarefaction curves for 0.03 OTUs for bacterial retrieved sequences. Data from the corresponding sampled depths are plotted per sediment site. 4 20 40 60 80 100 Site 365 0 OTUs 0 OTUs 20 40 60 80 100 Site 363 0 100 200 300 400 500 600 0 100 100 200 300 400 500 20 40 60 80 100 600 0 600 100 300 400 500 600 500 600 Site 389 0 OTUs Site 387 20 40 60 80 100 20 40 60 80 100 200 # Sampled seqs 0 OTUs 500 Site 383 # Sampled seqs 0 100 200 300 400 500 600 0 100 20 40 60 80 100 # Sampled seqs Site 391 0 100 200 300 300 400 (cmbsf) 25 75 125 175 225 275 325 375 415 400 # Sampled seqs 200 # Sampled seqs 0 OTUs 400 0 OTUs Site 371 0 25 300 # Sampled seqs 0 OTUs 20 40 60 80 100 # Sampled seqs 200 500 600 . Supplementary Figure S5. Rarefaction curves for 0.03 OTUs for Archaea. Several depths are plotted per site in each graph. 5 Supplementary Figure S6. Archaeal and bacterial OTU profiles with depth. The 30 number of sampled bacterial and archaeal sequences for the OTU analysis was 2828 and 636, respectively 6 35 Supplementary Figure S7. Correlation analysis of observed richness (Sobs, top row) and inverted Simpson diversity index (bottom row) and for bacterial sequences with the environmental parameters sediment depth, TOC content, sulphate, Fe2+, and Mn2+ concentrations. Correlations with P < 0.05 were considered significant. Continuous lines represent a linear model (formula provided above each panel) for the scatterplots and dotdashed lines show local trends by locally weighted scatterplot smoothing (LOWESS) using a smoothing factor of 2/3 (Cleveland 1979) 7 40 Supplementary Figure S8. Differential abundance of taxa between the basin (383, 387, 389, 391) and shelf (363, 365, 371) samples according to the t-test based metastats analysis. Differentially abundant taxa having statistically significant 45 differences (P≤0.05, after the false discovery rate estimation for multiple hypothesis testing) are indicated with asterisks (*), while error bars represent the calculated standard errors. 8 Supplementary Figure S9. Mantel test based correlation of changes in microbial community structure (expressed as the Bray-Curtis 50 dissimilarity) with changes in the environmental variables of Mn2+ concentration, TOC content and sulphate concentration for Bacteria (upper row) and Archaea (lower row). Continuous lines represent a linear model (formula provided above each panel together with the Mantel correlation score r) for the scatterplots and dot-dashed lines show local trends by locally weighted scatterplot smoothing (LOWESS) using a smoothing factor of 2/3 (Cleveland 1979). 9