CURRICULUM V ITAE
KONSTANTINOS THEOFILATOS
PERSONAL INFORMATION
Date of Birth 2 October 1983
Home Address Kolchidos 48 Patras, 26332, GREECE
Work Address Pattern Recognition Laboratory, Department of Computer Engineering and Informatics,
University of Patras, Rio, 26500
Telephone +30-2610-997518
E-mail theofilk@ceid.upatras.gr
EDUCATION
2009 - now PhD Candidate in Computer Engineering and Informatics from the Department of
Computer Engineering and Informatics of the University of Patras.
Phd thesis:
«Design and implementation of intelligent algorithmic techniques for the problem of
processing protein data»
2006 - 2009 Master in Science in Computer Science and Engineering from the Department
of Computer Engineering and Informatics of the University of Patras, Greece
(grade: Excellent)
Master thesis:
«Predicting time series using genetic programming techniques»
2001 - 2006 University of Patras,
Department of Computer Engineering and Informatics (grade: 7,32).
Diploma thesis:
«Hybrid Computational Intelligence algorithms for recognizing the structure of linear
systems» (grade: 10)
1999 - 2001 Graduate of Experimental high school of Patras (grade: 18,8).
RESEARCH INTERESTS
 Computational Intelligence (Neural Networks, Evolutionary Algorithms and applications).
 Genetic Programming (tree-based genetic programming, linear genetic programming, gene
expression programming etc.).
 Data mining.
 Artificial Intelligence – Expert Systems.
 Bioinformatics- Systems Biology- Protein-Protein Interactions.
 Statistical analysis.
 Web technologies and applications
 Modeling and predicting financial time series.
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CONFERENCES
1.
P. Kouvaros, K. Theofilatos, S. Likothanassis, S. Papadimitriou, S. Mauroudi, “A Novel Bayesian
Bioidata Exploration Tool (BABET): A case study on predicting protein protein interactions”, 5 th
Conference of the Computational Biology and Bioinformatics community in Greece, 17-19 October,
Alexandroupoli, 2010 (HSCBB10).
2.
Antoniou Maria, Dimitrakopoulos Christos, Theofilatos Konstantinos, Likothanassis Spyros,
Tsakalidis Athanasios, Mavroudi Seferina, "A new scoring method for assessing the reliability of
protein-protein interactions", December 1st – 4th 2010 - Athens, Greece, Divani Palace Acropolis
hotel, GOLDEN HELIX® SYMPOSIUM "Genetic Analysis in Translational Medicine“.
3. A. Karathanasopoulos, K. Theofilatos, P. Leloudas, S. Likothanassis, “Modeling the ase 20 Greek
index using artificial neural nerworks combined with genetic algorithms”, 20th International
Conference on Artificial Neural Networks, September 15-18, 2010, Thessaloniki, Greece (ICANN
2010).
4. X. Mosxopoulos, K. Theofilatos, D. Fotakis,S. Likothanassis, S. Kossida, “An Advanced Hierarchical
Algorithm for Protein Complex Prediction”, 10th IEEE International Conference on Information
Technology and Applications in Biomedicine (ITAB 2010), Corfu, Greece.
5. Μ. Rapsomaniki, P. Zerefos, K. Theofilatos, A. Tsakalidis, S.Likothanassis, , S. Mavroudi “A Novel
Pipeline Method For The Preprocessing Of Mass Spectrometry Proteomics Data”, 10th IEEE
International Conference on Information Technology and Applications in Biomedicine (ITAB 2010),
Corfu, Greece.
6. K. Theofilatos, D. Kleftogiannis, M. Rapsomaniki, V. Haidinis, S. Likothanassis, A. Tsakalidis, S.
Mavroudi “A novel embedded pre-miRNA classification approach for the prediction of microRNA
genes”, 10th IEEE International Conference on Information Technology and Applications in
Biomedicine (ITAB 2010), Corfu, Greece.
7. K. Theofilatos C., Dimitrakopoulos, A. Tsakalidis, S. Likothanassis, S. Mavroudi, “A New Hybrid
Method for Predicting Protein Interactions Using Genetic Algorithms and Extended Kalman Filters”,
10th IEEE International Conference on Information Technology and Applications in Biomedicine
(ITAB 2010), Corfu, Greece.
8. G. Vasilakis, E. Georgopoulos, K. Theofilatos, A. Karathanasopoulos, S. Likothanassis, “A Genetic
Programming Environment for EUR/USD Exchange Rate Forecasting”, Forecasting Financial
Markets: Advances for exchange rates, interest reates and asset management, Hannover,
Germany, May 2010.
9. M. Antoniou, E. Georgopoulos, K. Theofilatos, S. Likothanassis, “Forecasting Euro – United States
Dollar Exchange Rate with Gene Expression Programming”, Artificial Intelligence Applications and
Innovations IFIP Advances in Information and Communication Technology, 2010, Volume
339/2010,p.p. 78-85.
10. M. Antoniou, E. Georgopoulos, K. Theofilatos, A. Vasilopoulos S. Lykothanassis, “A Gene
Expression Programming Environment for Fatigue Modeling of Composite Materials”, Artificial
Intelligence: Theories, Models and Applications, 6th Hellenic Conference on AI, SETN 2010 Athens,
Greece, May 2010.
11. K. Theofilatos, E. Georgopoulos, S. Lykothanassis, “Modeling the MagnetoencephaloGram (MEG)
Of Epileptic Patients Using Genetic Programming and Minimizing the Derived Models Using Genetic
Algorithms”, NUMERICAL ANALYSIS AND APPLIED MATHEMATICS: International Conference on
Numerical Analysis and Applied Mathematics 2009: Volume 1 and Volume 2. AIP Conference
Proceedings, Volume 1168, pp. 486-488 (2009).
12. K. Theofilatos, G. Beligiannis and S. Lykothanassis, “Combining Evolutionary with Stochastic
Gradient techniques in system identification”, NumAn 2007, Conference in Numerical Analysis,
Recent Approaches to Numerical Analysis: Theory, Methods and Applications, 3-7 September,
Kalamata, Greece.
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JOURNALS
1. G. Vasilakis, E. Georgopoulos, K. Theofilatos, A. Karathanasopoulos, S. Likothanassis, “A Genetic
Programming Environment for EUR/USD Exchange Rate Forecasting”, European Journal of Finance,
2010 (submitted).
2. Konstantinos A. Theofilatos, Christos M. Dimitrakopoulos, Athanasios K.
Tsakalidis, Spyridon
D. Likothanassis, Stergios T. Papadimitriou, Seferina P.
Mavroudi, "Computational
Approaches for the Prediction of Protein-Protein
Interactions: A Survey", accepted to Current
Bioinformatics in January 2011.
3. Konstantinos A. Theofilatos, Christos M. Dimitrakopoulos, Christoforos A. Papasavvas , Spyridon D.
Likothanassis, Efstratios F. Georgopoulos, Seferina P. Mavroudi" Feature Selection Techniques in the
Computational Prediction of Protein-Protein Interactions", accepted to Current Bioinformatics in
January 2011.
4. K. Theofilatos, G. Beligiannis and S. Lykothanassis, “Combining evolutionary and stochastic gradient
techniques for system identification”, Journal of Computational and Applied Mathematics, Vol. 227,
Issue 1, 1 May 2009, Pages 147-160.
SUPERVISING DIPLOMA
THESIS
1. «Implementation and application of genetic programming techniques in medical problems», Mpekos
2.
3.
4.
5.
6.
7.
8.
Vasileios, Supervisor: Likothanassis Spiros, Co-supervisors: Georgopoulos Eustratios, Theofilatos
Konstantinos, University of Patras, Department of Computer Engineering and Informatics, 2008.
«Desing, analysis and implementation of intelligent algorithms for finding the optimal timetable for
buses (Examining the Greek case)», Leloudas Panagiotis, Supervisor: Likothanassis Spiros, Cosupervisors: Beligiannis Grigorios, Theofilatos Konstantinos, University of Patras, Department of
Computer Engineering and Informatics, 2009.
«Implementation and application of genetic programming techniques in financial problems», Vasilakis
Georgios, Supervisor: Likothanasis Spiros, Co-supervisors: Georgopoulos Eustratios, Theofilatos
Konstantinos, University of Patras, Department of Computer Engineering and Informatics, 2009.
«Design and implementation of a graphical interface for Gene Expression Programming», Antoniou,
Supervisor: Likothanasis Spiros, Co-supervisors: Georgopoulos Eustratios, Theofilatos Konstantinos,
University of Patras, Department of Computer Engineering and Informatics, 2009.
«Predicting protein protein interactions using computational intelligence techniques (hybrid algorithms
combining genetic algorithms with Bayesian classifiers)», Kouvaros Panagiotis, Supervisor:
Likothanasis Spiros, Co-supervisors: Mauroudi Seferina, Theofilatos Konstantinos, University of
Patras, Department of Computer Engineering and Informatics, 2010.
«Predicting protein protein interactions using computational intelligence techniques»,
Dimitrakopoulos Christos, Supervisor: Likothanasis Spiros, Co-supervisors: Mauroudi Seferina,
Theofilatos Konstantinos, University of Patras, Department of Computer Engineering and Informatics,
2010.
«Design and implementation of an integrated environment for the formulation of the optimal exam
timetable for Universities», Paraskevopoulou Dimitra, Supervisor: Likothanassis Spiros, Cosupervisors: Beligiannis Grigorios, Theofilatos Konstantinos, University of Patras, Department of
Computer Engineering and Informatics, 2010.
«Application of computational intelligence techniques in the problem of finding the optimal exam
timetable for Universities», Tosidis Dimitrios, Supervisor: Likothanassis Spiros, Co-supervisors:
Beligiannis Grigorios, Theofilatos Konstantinos, University of Patras, Department of Computer
Engineering and Informatics, 2010.
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TEACHING EXPERIENCE
2010 – today
Teaching Collaborator in the department of Telecommunication Systems
and networks of the Technological Institute of Mesologgi. Teaching:
o Laboratory «Programming language java» (8 hours per week)
o Laboratory «Programming language C» (2 hours per week)
o Theory «Programming language C» (6 hours per week)
2009-2010
Teaching Collaborator in the department of Telecommunication Systems
and networks of the Technological Institute of Mesologgi. Teaching:
o Laboratory «Parallel and distributed systems» (2 hours per week),
o Laboratory «Algorithms and data structure» (2 hours per week),
o Laboratory «Computer Networks I» (2 hours per week)
2009-2010
Teaching Collaborator in the Department of Automation of the
Technological Institute of Mesologgi. Teaching:
o Laboratory «Structured Programming-The Language C» (2 hours
per week)
2009-2010
Teaching Collaborator in the department of Biological agriculture of the
Technological Institute of Ionian Inlands. Teaching:
o Theory «Informatics» (2 hours per week) and
o Laboratory «Informatics» (2 hours per week)
2006-today
Teaching assistant of undergraduate subjects «Computational Intelligence
1», «Decision Theory», «Computational Intelligence 2» in the department
of Computer Engineering and Informatics of the University of Patras.
Teaching assistant of undergraduate subject «Bioinformatics» in the
department of Computer Engineering and Informatics of the University of
Patras.
2011-today
EXPERIENCE IN
DEVELOPMENT AND
RESEARCH PROJECTS
«LocPro- Support and promotion of local characteristic products», INTERREG III A/ΕΛΛΑΔΑ,
Pattern Recognition Laboratory, Duration: 18 months (1/2/2007 – 30/11/2008), budget: 1.000.000 €.
«Digitazation of Cultural Heritage of Municipality of Pirgos», REGIONAL OPERATIONAL
PROGRAMME WESTERN GREECE 2000-2006 , Pattern Recognition Laboratory. Duration 6
months (01/06/2005 – 30/11/2005), budget: 77.600,00 €.
«Digitazation of Cultural Heritage of Ionian Islands», University of Patras, Municipality of Argostoli,
Duration: 12 months (1/10/2008-31/9/2009).
«Reorganization Study And Integrated Transactions and Pilot Applications For Municipality of
Patras», Planning S.A. and University of Patras, Municipality of Patras, Duration: 5 months
(6/6/2008-5/11/2008).
«Design and implementation of intelligent algorithmic techniques for the problem of processing
protein data», Research Funding Program: Heracleitus II. Investing in knowledge society through
the European Social Fund , co-financed by the European Union (European Social Fund - ESF)
and Greek national funds through the Operational Program "Education and Lifelong Learning" of
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the National Strategic Reference Framework (NSRF), (01/09/2010-today).
COMPUTING SKILLS
Operating Systems Windows, Unix (Linux)
Programming MATLAB, C, C#, C++, Java, SQL, PHP, JavaScript, HTML, CSS
R (Statistical Computing), SPSS, CLIPS/ FuzzyCLIPS, WEKA
WORKSHOPS
October 2010
“Workshop on Biomolecular Interactions” Alexandroupoli, Greece
LANGUAGE SKILLS
Native Greek
Other English (fluent)
SCIENTIFIC ARTICLE
REVIEWER IN
Journal of Economics and
International Finance (FEIF)
http://www.academicjournals.org/jeif/index.htm
Journal of Engineering Technology
and Applied Science Research
http://www.etasr.com
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