Introduction: Hen egg white is one of the major raw materials used in food industry especially in foaming and gelling. Its accessibility and numerous studies, however, lack the availability of detailed knowledge and characterization of all the egg white component proteins. In order to better describe egg white proteins, their functions, and identify the best purification methods, various physico-chemical conditions are designed and applied (3). Egg white protein matrix is difficult to analyze due to the protein molecular weight range (12.7-8000 kDa), isoelectric point (pI) variation (3-10), enzymatic activity, and speciation (7). For example, ovalbumin represents more than 50% of the total protein mass (w/v); hence, it impacts the detection of minor protein species such as Avidin (7). As a result, the focus of this research project is the design of effective purification methods for Avidin and method adjustment for Lysozyme (Lyz) separation from egg white. Lyz or N-acetylmuramide lycanhydrolase is a single polypeptide chain enzyme containing 129 amino acid residues, with a molecular weight range of 14.3-14.6 kDa, and an isoelectric point of 10.7. It represents approximately 3.5% (w/v) of the egg white (11). Avidin is a dimeric or tetrameric non-enzymatic protein, with a molecular weight range of 33.0-35.0 kDa in its dimeric form, and 66.0-69.0 kDa in its tetrameric form, and an isoelectric potential of 10.0. Avidin represents approximately 0.05% (w/v) of the egg white and has a high-affinity for binding biotin (6). Lysozyme and Avidin isolation requires high-resolution protein separation methods. In order to design high-yield purification techniques, protein thermal stability, molecular weights, and isoelectric points are taken into account (12). Acidic pH of sample buffers isolates basic protein species such as Lyz and Avidin from acidic and neutral ones (11). Thermal denaturation eliminates thermally unstable contaminants. Chang (16) showed that the structural integrity and activity of proteins decreases with the increase in time and temperature. For example, immunoglobulin is thermo-sensitive, so that severe heat denaturation occurs at temperatures above 75 ºC (20-22). Dialysis technique implies the loss of protein species with a molecular weight (MW) smaller than the size of the semipermeable membrane pores. During dialysis, Lyz and Avidin remain inside the semipermeable membrane (1). The MW and pI values variation, electrophoresis procedure is applied to separate egg white proteins from each other (11). Despite the fact that both Lyz and Avidin have been well characterized using Western Blotting and ELISA, the procedures remain vague in details especially for Avidin quantitative analysis from hen egg white protein samples (17-19). Besides, Avidin does not have enzymatic functions and cannot be detected using enzymatic assays. Instead, it can be tracked by general staining procedures and an over-loaded electrophoresis gel (18). 1|Page This research is focused on two main hypotheses. The first hypothesis is the alteration of acidic pH conditions of sample buffers and ultimate thermal denaturation will help optimize Lyz and Avidin purification methods (5-12). The second hypothesis is that Western Blot and ELISA procedures can be developed sensitive enough to detect small amounts of Avidin and Lyz. General Objectives: 1. Optimization of Lysozyme and Avidin purification methods which include sample buffer acidic pH alteration and heat denaturation. 2. Development of Western Blot procedure for Lysozyme and Avidin quantitative analysis. 3. Development of ELISA procedure for Lysozyme and Avidin quantitative analysis. Research Project Design: 1. Optimization of Lysozyme and Avidin purification methods which include sample buffer acidic pH alteration and heat denaturation. a. Sample buffer pH conditions adjusted to pH of 4, 5, 6, and 7. b. Heat denaturation of samples at 65ºC for 5 minutes. 2. Development of Western Blot procedure for Lysozyme and Avidin quantitative analysis. a. Western Blot procedure adapted for Lyz and Avidin concentrations. 3. Development of ELISA procedure for Lysozyme and Avidin quantitative analysis. a. ELISA procedure adapted to Lyz and Avidin concentration ranges. Methods: -Protein Preparation: Heat denaturation and isoelectric protein precipitation: After washing and cleaning of eggs bought in trade, they are carefully broken and the white and yolk separated, taking the precaution of removing chalazae (1). The separated egg whites are homogenized using hand-held homogenizer. Avidin and Lysozyme were partially purified under acidic conditions of pH 4.0, 5.0, 6.0, and 7.0. The volume of egg white (6 mL) is measured using a graduated cylinder and then adjusted with 24 mL of ascorbate buffer solution (pH 4.0, pH 5.0); and sodium phosphate buffer (pH 6.0, pH 7.0), with total buffer molarity of 50mM, at a 1:5 (v/v) dilution ratio. The diluted samples were mixed via a gentle finger flicking for approximately 10 minutes and placed in a water bath for heat denaturation at 65°C for 5 minutes. The tubes were immediately immersed in an ice bath for 1 minute to stop the denaturation (13-14). The pH of the samples was measured after heat denaturation and readjusted to the initially set values using HCl (2.0M) or NaOH (2.0M) as needed (Table #1). 2|Page The tubes were centrifuged for 20 minutes in Beckman Refrigerated Centrifuge at 10,000 x g in a JA 20.1 rotor. The pH of the centrifuged solutions was adjusted to pH 7.0 for ultimate tests (Table#2). The crude samples were labeled as C1 and stored on ice. -Ion-exchange Chromatography: Ion-exchange chromatography (IEC) technique was applied on crude aliquots for Lyz and Avidin partial purification. IEC is based on the difference in protein isoelectric potentials (pI) values eluting charged molecules from uncharged or in this research project negatively changed and neutral protein species from positively charged protein species (4). Lysozyme pI value is 10.7 and Avidin pI value is 10.0, which is greater than the pH of the sample buffer; consequently, both proteins are considered to be positively charged and so a cation exchange resin, S (Pierce) is used. In this experiment, the cation exchanger that is negatively charged at pH value of 7.0 will electrostatically attract and bind proteins with a positive charge at pH value of 7.0, like Lysozyme and Avidin, while the negatively charged or electroneutral proteins will slip through the column. The four aliquots of the prepared crude samples were exposed to dialysis as previously described (8). The dialyzed samples were centrifuged in Beckman Refrigerated Centrifuge (10,000 x g in a 20.1 JA rotor) for 20 minutes. Absorbance spectra were obtained from 1:20 and 1:40 dilutions using Beckman DU 800 Spectrophotometer at λ=280nm. The obtained samples were eluted from the column with NaCl (150 mM) in sodium phosphate buffer, centrifuged in Eppendorf Centrifuge (2000 x g JA rotor) for 5 minutes labeled as E1 and stored in ice for ultimate tests. From the previously obtained absorbance values, protein concentration range was estimated as 5µg-60µg and absorbance data were collected using Beckman DU 800 Spectrophotometer at λ=595nm. Linear graph was constructed and the molar extinction coefficient was determined to be 0.0124. -Bradford assay: The Bradford assay is a protein determination method that involves the binding of Coomassie Brilliant Blue G-250 dye to proteins (2). When the dye binds to protein, it is converted to a stable unprotonated blue form detected at λ = 595 nm (10). Beer's law may be applied for accurate quantitation of protein by selecting an appropriate ratio of dye volume to sample concentration. In this assay, E1 samples at estimated concentrations of 0.0958 mg/ml (pH=7), 0.0617 mg/ml (pH=6), 0.0523 mg/ml (pH=5), and 0.0504 mg/ml (pH=4); and C1 samples at estimated concentrations of 0.253 mg/ml (pH=7), 0.239 mg/ml (pH=6), 0.246 mg/ml (pH=5), and 0.275 mg/ml (pH=4) were tested (2). The absorbance data were obtained using Beckman DU 800 Spectrophotometer at λ=595nm. -Western Blotting: SDS-PAGE (Sodium Dodecy Laemmlil Sulfate Polyacrylamide Gel Electrophoresis): Gels, buffers, and Coomassie Blue Stain were prepared according to the SDSPAGE Protocol. 15% acrylamide Criterion gels (BioRad) were used (See protocol SDS-PAGE table). Sample loading concentrations were adjusted according to the results obtained from Bradford assay. 3|Page -Blotting: The “transfer sandwich” was run at 100V for 1 hour. The samples were blocked with 0.2% blocker Tween-20 solution and incubated with Avidin and Lysozyme primary antibodies diluted at 1:2000 for 1 hour with shaking at 4ºC. The sequential incubation of primary and antibodies is followed by brief washing of the blot with PBS-T (0.1%). Secondary antibodies 800CW (1:10,000) and 680LT (1:20,000) were added to the tested samples, and incubated for 1 hour at room temperature with shaking. The samples were imaged on LICOR el Imager at 700nm and 800nm for 15sec-5min. -ELISA: Buffers and coating solutions were prepared according to the standard protocol. The wells were filled with 100µL/well of coating solution, incubated overnight at 23ºC, washed 4x with 350 µL PBS-T buffer per well, and blocked with 150µL/well blocking solution. 100 µL/well of primary antibody (80ng/mL antibody in PBS-T) were added, and incubated for 1 hour at 23ºC. The plate was washed as previously stated and incubated for 1 hour at 23 ºC with 100 µL/well of second antibody (300ng/mL in PBS-T). The plates were washed and incubated with 100 µL/well of 1/3 TMB to citric acid (0.1M)/acetate (0.1M) solution adjusted at pH=4.9 for 20 minutes at RT. Calorimetric reaction was stopped by the addition of 100 µL/well 0.5M sulfuric acid. Plates were screened in BioRad iMark Microplate Reader at λ=450nm. Results and Discussion: -Optimization of Lysozyme and Avidin purification methods: Lysozyme and Avidin purification methods were optimized by the application of the sample buffers with pH values of 4.0, 5.0, 6.0, and 7.0. 1:5 (v/v) diluted samples were exposed to heat denaturation at 65°C for 5 minutes with pH readjustment (Table#1). Table#1: Protein samples pH adjustment after heat denaturation. pH=4 pH=5 pH=6 pH=7 initial 3.98 4.77 5.89 6.87 Final (after adjustment) 3.98 5.03 5.98 6.99 Heat denatured samples had different degree of cloudiness and precipitate formation. Egg white samples at pH 7.0 and 6.0 were slightly cloudy whereas pH 4.0 had no sign of precipitate formation. Samples exposed to pH 5.0 had the most amount of precipitate formation which might be explained by the big number of proteins that fall in this range of pI 5.0 values. The samples were centrifuged for 20 minutes in Beckman Refrigerated Centrifuge at 10,000 x g in a JA 20.1 rotor and the pH of the supernatant liquid was adjusted to pH 7.0 for ultimate tests (Table#2). 4|Page Table#2: Centrifuged protein samples’ pH adjustment. pH=4 4.68 6.99 initial final pH=5 7.45 6.98 pH=6 6.50 6.99 pH=7 7.21 7.01 During the ion-exchange chromatography, the positive charge of Lyz and Avidin at pH 7.0 was used to eliminate electro-neutral and negatively charged protein species. Cation exchange resin, S (Pierce) bound positively charged proteins like Lysozyme and Avidin, while allowing the negatively charged or electro-neutral proteins slip through the column. The obtained samples were exposed to dialysis as previously described (8). Absorbance data were obtained from 1:20 and 1:40 dilutions using Beckman DU 800 Spectrophotometer at λ=280nm (Table#3). Table#3: Absorbance at λ=280nm of 1/20 and 1/40 diluted protein samples: 1/20 dilution pH=4.0 pH=5.0 pH=6.0 pH=7.0 1.171 0.911 0.996 1.040 1/40 dilution pH=4.0 pH=5.0 pH=6.0 pH=7.0 0.549 0.491 0.477 0.506 Estimated [protein] 1/40 dilution (mg/mL) (E1) 0.0504 0.0523 0.0617 0.0958 Estimated [protein] 1/40 dilution (mg/mL) (C1) 0.275 0.246 0.239 0.253 Original [protein] 1/40 dilution (mg/mL) 11.0 9.82 9.54 10.1 The crude samples were washed with 50mM sodium phosphate, centrifuged in Beckman Refrigerated Centrifuge (20.1 JA force) for 5 minutes, eluted, and labeled as E1. The protein concentration range was estimated as 5µg-60µg and absorbance data were collected using Beckman DU 800 Spectrophotometer at λ=595nm (Table#4). Table#4: Absorbance at λ=595nm of protein samples at 5µg-60µg concentration range. Protein Concentration (µg) 5 10 15 20 30 40 50 60 Abs 0.118 0.205 0.254 0.335 0.436 0.552 0.677 0.789 Abs 0.088 0.158 0.2 0.265 0.374 5|Page Fig.1: Absorbance at λ=595nm of protein samples at 5µg-60µg concentration range. 0.9 0.8 y = 0.0124x + 0.0456 R² = 0.9852 0.7 0.6 0.5 Series1 0.4 Linear (Series1) 0.3 0.2 0.1 0 0 10 20 30 40 50 60 70 From Fig.1 the extinction coefficient was obtained from the equation: y=0.0124X+0.0456. Using the obtained Beer Lambert equation, Table#5 was designed for the Bradford assay: Table#5: Bradford assay design for E1 and C1 protein samples. Id E1(7) E1(7) E1(6) E1(6) E1(5) E1(5) E1(4) E1(4) C(7) C(7) C(6) C(6) C(5) C(5) C(4) C(4) V(µl) 100 100 100 100 100 100 100 100 12.4 12.4 13.1 13.1 12.8 12.8 11.4 11.4 Abs λ=595nm 0.240 0.253 0.196 0.197 0.136 0.142 0.144 0.152 0.460 0.495 0.435 0.458 0.350 0.373 0.307 0.287 m (µg) 15.68 16.73 12.13 12.21 7.29 7.77 7.94 8.58 33.42 36.24 31.40 33.26 24.55 26.40 21.08 19.47 µg/µl 0.1568 0.1673 0.1213 0.1221 0.0729 0.0777 0.0794 0.0858 2.6951 2.9227 2.3972 2.5388 1.9178 2.0628 1.8492 1.7077 average (µg/µl) 0.16 undiluted crudes(µg/µl) 0.12 0.08 0.08 2.81 14.04 2.47 12.34 1.99 9.95 1.78 8.89 6|Page -Western Blot: SDS-PAGE (Sodium Dodecy Laemmlil Sulfate Polyacrylamide Gel Electrophoresis) procedure optimization: Gels, buffers, and Coomassie Blue Stain were prepared according to the SDS-PAGE Protocol. 15% acrylamide Criterion gels (BioRad) were used (SDS-PAGE protocol table). Sample loading concentrations were adjusted according to the results obtained from Bradford assay (Table#6). Table#6: SDS-PAGE table before adjustment: Id and Molecular weight Standard Avidin (68.3 kDa) Lysozyme (14.3 kDa) E1(7) E1(6) E1(5) E1(4) C1(7) C1(6) C1(5) C1(4) H2O (µL) 14 15 15 0 0 0 0 23.5 22.5 21.0 20.0 Sample (µL) 6 15 15 30 30 30 30 6.43 7.50 9.00 10.00 2xLammeli buffer (mL) 20 30 30 30 30 30 30 30 30 30 30 The wells were loaded according to the schemas: SDS-PAGE schema for Avidin: 1 sb 2 3 Avidin E1(7) 4 5 6 7 8 E1(6) E1(5) E1(4) 9 C1(7) 10 C1(6) 11 12 C1(5) C1(4) SDS-PAGE schema for Lysozyme: 1 sb 2 3 4 Avidin Lysozyme E1(7) 5 E1(6) 6 7 8 E1(5) E1(4) C1(7) 9 C1(6) 10 C1(5) 11 12 C1(4) ---- The “transfer sandwich” was run at 100V for 1 hour. The samples were blocked with 0.2% blocker Tween-20 solution and incubated with Avidin and Lysozyme primary antibodies diluted at 1:2000 for 1 hour with shaking at 4ºC. The sequential incubation of primary and antibodies is followed by brief washing of the blot with PBS-T (0.1%). Secondary antibodies 800CW (1:10,000) and 680LT (1:20.000) were added to the tested samples, and incubated for 1 hour at room temperature with shaking. The samples were imaged on LICOR el Imager at 700nm and 800nm for 15sec-5min (Fig.2, Fig.3). 7|Page Fig.2: SDS-PAGE Lysozyme (gel#2) Fig.3: SDS-PAGE Avidin (gel#1) Table #8: Avidin WB gel#1 Results: E1(4) ND E1(5) ND E1(6) ND E1(7) ND C1(4) 24.8 C1(5) 43.7 C1(6) 34.9 C1(7) ND Signal-Avidin SignalND ND ND ND ND ND ND ND Conalbumin From Table #8, Avidin was detected with Western Blot only in C1 samples. The protein was not detected most of the times because of the overload of the wells. Molecular Weight detected was ~ 15.7kDa, monomeric structure compared to the dimer in the standard; maximal recovery of ~2 fold with respect to the lowest recovery values from other buffers, was obtained in ascorbate buffer at a pH of 5.0. Conalbumin was not detected in any of the wells. Lysozyme was detected in C1(6), C1(5), and C1(4), which means that the used antibody was impure affecting the quantitation. Table #9: Lysozyme WB gel#2 Results: SignalLysozyme SignalConalbumin E1(4) E1(5) E1(6) E1(7) C1(4) C1(5) C1(6) C1(7) 4.82 10.8 3.33 5.20 85.1 80.3 93.5 76.8 ND ND ND ND ND ND ND ND From Table #9, Lysozyme was detected with Western Blot even in the eluted E1 samples. Molecular Weight detected was ~ 14.9kDa; maximal recovery of ~3 fold with respect to the lowest recovery values from other buffers was obtained in ascorbate buffer at a pH of 5.0. Conalbumin was not detected in any of the wells. The antibody used in the experiment did not interfere with Lysozyme quantitation. 8|Page To avoid the overload of the wells, the protein volumes loaded were adjusted (Table#10). Table#10: SDS-PAGE table after adjustment: ID Sb Avidin E1(7) E1(6) E1(5) E1(4) H2O(µL) Buffer NaCl (150mM), Na3PO4 (µL) 8.00 0 14.10 0 14.10 8.49 14.10 6.06 14.10 0 14.10 1.40 Sample (µL) 12.00 15.90 7.41 9.84 15.90 14.50 2xLammeli (µL) 20 30 30 30 30 30 The wells were loaded according to the schema: 1 sb 2 E1(7) 3 E1(6) 4 E1(5) 5 E1(4) 6 --- 7 8 Avidin E1(4) 9 E1(5) 10 E1(6) 11 E1(7) 12 sb The “transfer sandwich” was run at 100V for 1 hour. The samples were blocked with 0.2% blocker Tween-20 solution and incubated with Avidin and Lysozyme primary antibodies diluted at 1:2000 for 1 hour with shaking at 4ºC. The sequential incubation of primary and antibodies is followed by brief washing of the blot with PBS-T (0.1%). Secondary antibodies 800CW (1:10,000) and 680LT (1:20.000) were added to the tested samples, and incubated for 1 hour at room temperature with shaking. The samples were imaged on LICOR el Imager at 700nm and 800nm for 15sec-5min (Fig.4). Fig.4: SDS-PAGE Lysozyme and Avidin (gel#3) 9|Page Table #11: Lysozyme WB gel#3 Results: Signal-lysozyme SignalConalbumin E1(4) .635 E1(5) 2.08 E1(6) .367 E1(7) .460 .660 NaN NaN .338 From Table #11, Lysozyme was detected with Western Blot even in the eluted E1 samples. Molecular Weight detected was ~ 13kDa, maximal recovery of 5-6 fold with respect to the lowest recovery values from other buffers, was obtained in ascorbate buffer at a pH of 5.0. The pH conditions at 5 and 6 were the best for the removal of Conalbumin (Ovotransferrin). The antibody used in the experiment was non-specific and did not interfere with Lysozyme quantitation. Table #12: Avidin WB gel#2 Results: Signal-avidin monomer Signal-Conalbumin E1(4) 1.70 4.60 E1(5) 1.95 .722 E1(6) .600 .739 E1(7) .704 3.54 From Table# 12, Avidin was detected from the eluted E1 samples by overloading the wells. The detected molecular weight was ~15.9 kDa, dimeric from; maximal recovery of ~3 fold with respect to other buffer conditions was obtained in ascorbate buffer at a pH of 5.0. The pH conditions at 5 and 6 were the best for the removal of Ovotransferrin. The used antibody was non-specific and did not interfere with Avidin quantitative analysis. -ELISA optimization: Enzyme-linked immunosorbent assay was designed to capture Lysozyme only as an alternative detection method; Avidin should not be detected because it does not have enzymatic activity. Buffers and coating solutions were prepared according to the standard protocol. The wells were filled with 100µL/well of solution according to optimization calculation (Table#13, 14, 15, 16). Table#13: ELISA micro-plate dilution optimization. E1(7) E1(6) E1(5) E1(4) Avidin Lysozyme 3xblank Sb H2O(µL) 106.5 100.4 85 88.9 2xPBS(µL) 125 125 125 125 125 125 Sample(µL) 18.5 24.6 40 36.1 [Stock]ng/µL 162 122 75 83 0.1 V(total)(µL) 250 250 250 250 250 250 250 250 Dilutions 1:200 1:200 1:200 1:200 10 | P a g e *Avidin and Lysozyme 1:10,000 dilution---- 1µg/µL= 0.1ng Table#14: E1(5) micro-plate calculations. ddH2O(µL) 118.3 105.0 85.0 E1(5),A E1(5),B E1(5),C 2xPBS(µL) 125 125 125 Diluted sample (o.375ng/µL) (µL) 6.7 20 40 Amount (ng) 2.5 7.5 15 Diluted sample (1.50ng/µL) (µL) 1.7 5.0 10.0 Amount (ng) 2.5 7.5 15 Table#15: E2(5) micro-plate calculations. ddH2O(µL) 123.3 120.0 115.0 E2(5),A E2(5),B E2(5),C 2xPBS(µL) 125 125 125 Table#16: Standard solution calculation adapted for micro-plate screening. ddH2O(µL) 120 115 110 95 Sb Sb Sb Sb 2xPBS(µL) 125 125 125 125 Diluted sample (µL) 5 10 15 30 Amount (ng) 0.5 1 1.5 3 Micro-plates were screened in BioRad iMark Microplate Reader at λ=450nm following loading map from Table#17. Table#17: ELISA micro-plate loading map: 1 2 3 4 Blnk Blnk A Blnk B LyzA LyzA LyzB LyzB E1 B C E1 A E1 A E1 B D E F Av A Av A Av B Av B E1 B G E1 A E1 A E1 B H *Grey color- Lysozyme present. 5 6 LyzC E1 C LyzC E1 C Av C Av C E1 C E1 C 7 8 9 10 11 12 Blnk Blnk Blnk E2 A E2 A E2 B E2 B E2 C E2 C E2 A E2 A E2 B E2 B E2 C E2 C *A=[E1(5)]=2.5 ng; B= [E1(5)]=7.5 ng; C=[E1(5)]=15.0 ng; *E2=4x[E1(5)] 11 | P a g e Table #18: ELISA micro-plate Results: Signal-Lyz added Signal-no Lyz added E1(5), 2.5ng E1(5),7.5 ng E1(5), 15.0ng E2(5), 2.5ng 0.1165 0.0635 0.0585 0.060 0.0705 0.0685 0.0605 0.050 0.551 0.378 0.395 0.020 0.383 0.140 0.367 0.018 E2(5),7.5 ng 0.060 E2(5), 15.0ng 0.070 0.014 0.10 0.020 0.027 0.018 0.090 From Table# 18, Lysozyme was detected from the eluted E1 and E2(4x[E1]) samples. E2 samples showed poor detection due to the overload of the micro-plate wells. Maximal detection of ~2 fold with respect to other E1(5) concentrations is acquired in E1(5), 2.5ng samples. The signal is recorded even in the wells with no Lysozyme added with maximal detection in E1(5), 2.5ng samples. The used antibody did not show a good binding to enzymes. Conclusions: Egg white protein characteristics remain to be under-described due to the low effectiveness of applied purification methods. In this research project, we analyzed one enzymatic egg white protein- Lysozyme, and one minor non-enzymatic protein-Avidin. The two minor species were tested for purity via buffer pH variation and heat denaturation at 65ºC. Western Blot and ELISA were analyzed for Lysozyme and Avidin detection sensitivity. Lowering the buffer pH to 5.0 caused Lysozyme and Avidin maximal purity and recovery. The detected Avidin traces’ showed molecular weight of its dimer isoform. Heat denaturation at 65ºC did not facilitate protein purification. Western Blot detection method was remarked to be more useful analytical technique for Lysozyme and Avidin purity estimation than ELISA. 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