1 Title: Forever competent: Deep-sea bivalves are colonized by their chemosynthetic symbionts throughout their lifetime 2 Wentrup et al. 3 4 5 Table S1: Summary of observations made in this study of symbiont abundance and distribution in gill tissues of juvenile and adult Bathymodiolus azoricus and B. puteoserpentis using FISH and TEM, and our interpretations of these observations. Because both the sulfur- and methane-oxidizing symbionts were involved in the initial colonization of gill cells, we do not distinguish between these symbionts in this table. 1 2 3 4 5 6 6a Observations Budding zone and the youngest filaments lacked symbionts. (FISH and TEM analyses; Figure 1c and 2a) Symbionts were first observed in the 7th – 9th filament (counting from the budding zone). Filaments that were ontogenetically older than the 7th to 9th filament contained progressively more and more symbionts. (FISH and TEM analyses; Figure 1c and 2a) Within a filament the two putative filament growth regions (ventral and dorsal ends of the lamellae) lacked symbionts. (FISH analyses; Figure 1c, e and S1a, b, c) The hemolymph lacunae lacked symbionts. (FISH analyses; Figure 1h) In newly colonized bacteriocytes the first symbionts occurred in the apical region close to the externally facing host cell membrane. (FISH and TEM analyses; Figure 1h and 2d) In the posterior growth zone, descending and ascending lamellae of a given filament are formed at the same time. (FISH analyses; Figure 1c) The first symbionts occurred in the descending lamellae, while the corresponding ascending lamella of a given filament lacked symbionts. (FISH analyses; Figure 1c) Interpretation Newly formed gill cells in the posterior growth zone do not contain symbionts. Symbiont colonization proceeded from ontogenetically older to ontogenetically younger filaments. These observations indicate that symbiont colonization can only occur after host cells have reached a certain differentiation stage. Newly formed gill cells in the ventral and dorsal growth regions also do not contain symbionts. This indicates, as observations 1 and 2) that symbiont colonization is influenced by developmental factors. This indicates that the symbionts do not colonize newly formed gill cells internally via the hemolymph system. This suggests that symbiont cells are acquired from the exterior. Descending and ascending lamellae of a given filament are formed at the same time in Bathymodiolus, as known from other bivalves (Neumann and Kappes, 2003). The gradients in colonization patterns described in 6a) - 6e) occurred in filaments of the same ontogenetic age. This suggests that symbiont colonization is not solely determined by developmental factors. We hypothesize that self-infection best explains the observed gradients because the first colonized gill 1 Remarks We were not able to resolve how symbiont numbers increased after initial colonization of newly formed filaments, e.g. through continuous uptake of symbionts, intracellular symbiont proliferation, and/or bacteriocyte proliferation (see Discussion). This has been proposed in earlier studies based on morphological and molecular observations (see Discussion). We have no explanation for why the descending lamella is colonized before the ascending lamella of a filament. 6b 6c 6d 6e 7 8 In newly formed descending lamellae, symbionts occurred on the anterior and not the posterior side of a given filament. (TEM and FISH analyses; Figure 1c and 2a) In older descending lamellae, symbiont abundance increased progressively dorsoventrally and laterally. (TEM and FISH analyses; Figure 1c and 2a) In newly formed ascending lamellae, symbionts first occurred in gill cells at the abfrontal end. (FISH analyses; Figure 1c, g) In older ascending lamellae, symbiont abundance increased progressively from the abfrontal to the frontal end on both the anterior and posterior sides of a given filament. (FISH analyses; Figure 1c, g) The ciliated frontal ends of descending and ascending lamellae lacked symbionts. (FISH analyses; Figure 1c, e, g) Gill cells of young uncolonized filaments were columnar and their apical ends were densely covered by microvilli, while bacteriocytes at an early colonization stage with a few symbionts had almost no microvilli. Ontogenetically older, fully-developed bacteriocytes with numerous symbionts lacked microvilli completely. (TEM; Figure 2) cells were always those closest to already colonized gill tissues. If environmental infection was the main colonization mode we would expect a more random colonization pattern without a gradient (Figure 5). This is most likely due to the specific function of ciliated cells and mucus cells at the frontal edges of lamellae. We hypothesize that the invasion of the symbionts into host cells induces morphological changes in the host cells. 6 2 This is known for all symbiotic bivalves. 7 8 9 Table S2: Summary of observations made in this study of symbiont abundance and distribution in gill tissues of adult “C”. ponderosa clams using FISH, and our interpretations of these observations. As all other investigated vesicoymid clams, “C”. ponderosa only harbors sulfuroxidizing symbionts. 1 2 3 4 5 6 Observations Budding zone lacked symbionts. (Figure 3b) Ventral growth zone of filaments lacked symbionts. (Figure 3a, b) Symbionts were abundant in ontogenetically older gill filaments. (Figure 3a) The gill’s hemolymph lacunae did not contain symbionts. (not shown) Symbionts were observed in the interfilamental junctions. (Figure 3a) Symbionts occurred at the dorsal ends of gill filaments. (Figure 3b) Interpretation Newly formed gill cells in the posterior growth zone do not contain symbionts. This indicates that symbiont colonization can only occur after host cells have reached a certain differentiation stage and is influenced by developmental factors. Remarks This indicates that the symbionts do not colonize newly formed gill cells internally via the hemolymph system. We hypothesize that the symbionts use these gill tissue bridges to spread from ontogenetically older, colonized bacteriocytes to newly formed, symbiont-free gill cells. We do not know if the gills of vesicomyid clams lack growth zones at their dorsal ends. 3 10 References 11 12 Neumann, D., and Kappes, H. (2003) On the growth of bivalve gills initiated from a lobule-producing budding zone. Biol Bull 205: 73-82. 4