Ground Rules of Metabolism Chapter 6 Part 2 6.4 Metabolism – Organized, Enzyme-Mediated Reactions ATP, enzymes, and other molecules interact in organized pathways of metabolism (activities by which cells acquire and use energy) Types of Metabolic Pathways A metabolic pathway is any series of enzymemediated reactions by which a cell builds, rearranges, or breaks down an organic substance • Anabolic pathways build molecules • Catabolic pathways break apart molecules • Cyclic pathways regenerate a molecule from the first step Controls Over Metabolism Concentrations of reactants or products can make reactions proceed forward or backward Feedback mechanisms can adjust enzyme production, or activate or inhibit enzymes Regulatory molecules can bind to an allosteric site to activate or inhibit enzymes • Feedback inhibition Allosteric Control Fig. 6-14a, p. 100 allosteric activator allosteric binding site vacant enzyme active site substrate cannot bind active site altered, substrate can bind a Fig. 6-14a, p. 100 Fig. 6-14b, p. 100 allosteric inhibitor allosteric binding site vacant; active site can bind substrate active site altered, can’t bind substrate b Fig. 6-14b, p. 100 allosteric activator allosteric inhibitor allosteric binding site vacant enzyme active site substrate cannot bind active site altered, substrate can bind allosteric binding site vacant; active site can bind substrate active site altered, can’t bind substrate Stepped Art Fig. 6-14, p. 100 Animation: Allosteric activation Animation: Allosteric inhibition Feedback Inhibition enzyme 2 enzyme 1 substrate enzyme 3 enzyme 4 Excess molecules of end product bind to molecules of an enzyme that catalyzes this pathway’s first step. The greater the excess, the more enzyme molecules are inhibited, and the less product is synthesized. enzyme 5 end product Fig. 6-15, p. 100 Animation: Feedback inhibition Redox Reactions Oxidation-reduction reactions (paired reactions) • A molecule that gives up electrons is oxidized • A molecule that accepts electrons is reduced • Coenzymes can accept molecules in redox reactions (also called electron transfers) ATP Synthesis Coenzymes deliver electrons to electron transfer chains for ATP synthesis Electron transfer chain • A series of redox reactions in membrane-bound enzymes or molecules that release energy in small, controlled steps Uncontrolled and Controlled Reactions Fig. 6-16a, p. 101 glucose CO2 oxygen water spark A Glucose and oxygen react when exposed to a spark. Energy is released all at once as CO2 and water form. Fig. 6-16a, p. 101 Fig. 6-16b, p. 101 CO2 oxygen 1 Energy input splits glucose into carbon dioxide, electrons, and hydrogen ions (H+). e– glucose 2 Electrons lose energy as they move through an electron transfer chain. 3 Energy released by electrons is harnessed for cellular work. H+ e– water 4 Electrons, protons, and oxygen combine to form water. B The same overall reaction occurs in small steps with an electron transfer chain. Energy is released in amounts that cells can harness for cellular work, such as muscle contraction or active transport. Fig. 6-16b, p. 101 CO2 oxygen 1 Energy input splits glucose into carbon dioxide, electrons, and hydrogen ions (H+). e– glucose 2 Electrons lose energy as they move through an electron transfer chain. 3 Energy released by electrons is harnessed for cellular work. H+ e– water 4 Electrons, protons, and oxygen combine to form water. Stepped Art Fig. 6-16b, p. 101 Animation: Controlling energy release Overview: Energy Pathways nutrients (carbohydrates, fats, proteins) Energy-releasing reactions ADP + Pi oxidized coenzymes ATP molecules of life breakdown products (e. g., carbon dioxide; water) reduced coenzymes Energy-requiring reactions small organic molecules Fig. 6-17, p. 101 6.4 Key Concepts: The Nature of Metabolism Metabolic pathways are energy-driven sequences of enzyme-mediated reactions They concentrate, convert, or dispose of materials in cells Controls over enzymes that govern key steps in metabolic pathways can shift cell activities fast 6.5 Night Lights Bioluminescence is visible evidence of metabolism Bioluminescence • Light emitted from metabolic reactions in living organisms Enzymes of Bioluminescence Bioluminescent organisms emit light when enzymes (luciferases) convert chemical bond energy in luciferins to light energy luciferin + ATP → luciferin-ADP + Pi luciferin-ADP + O2 → oxyluciferin + AMP + CO2 + light Bioluminescence: Fireflies Fig. 6-18a, p. 102 Fig. 6-18b, p. 102 A Research Connection Researchers can transfer genes for bioluminescence from one species to another • Example: bacteria with jellyfish genes 6.5 Key Concepts: Metabolism Everywhere Knowledge about metabolism, including how enzymes work, can help you interpret some natural phenomena Key Players in Metabolic Reactions Animation: Chemical bookkeeping Animation: Chemical equilibrium Animation: Energy changes in chemical work Animation: Enzymes and activation energy Animation: Enzymes and temperature Animation: How catalase works Animation: One-way energy flow and materials cycling Video: Alcohol, enzymes, and your liver