Introduction Modern techniques for structure determination of organic compounds include: • Mass spectrometry • • Infrared spectroscopy • • • Size and formula of the compound Functional groups present in the compound Ultraviolet spectroscopy • Conjugated p electron system present in the compound Nuclear magnetic resonance spectroscopy • Carbon-hydrogen framework of the compound 10.1 Mass Spectrometry of Small Molecules: Magnetic-Sector Instruments Mass spectrometry (MS) measures the mass and molecular weight (MW) of a molecule • Provides structural information by finding the masses of fragments produced when molecules break apart • Three basic parts of mass spectrometers: Mass Spectrometry of Small Molecules: Magnetic-Sector Instruments Electron-impact, magneticsector instrument • • • • Sample is vaporized into ionization source Bombarded by electron beam (70 eV) dislodging valence electron of sample producing cation-radical Most cation-radicals fragment and are separated in magnetic field according to their mass-tocharge ratio (m/z) Since z = 1 for most ions the value of m/z is mass of ion Fig. 15-5, p. 619 Table 15-3, p. 620 Interpreting Mass Spectra Mass spectrum of hexane (C6H14; MW = 86) • All carbon-carbon bonds of hexane are electronically similar and break to a similar extent • Mass spectrum contains mixture of ions Interpreting Mass Spectra M+ = 86 for hexane • • • • m/z = 71 arises from loss of methyl radical from hexane cation radical m/z = 57 arises from loss of ethyl radical from hexane cation radical m/z = 43 arises from loss of propyl radical from hexane cation radical m/z = 29 arises from loss of butyl radical from hexane cation radical Fig. 15-6, p. 621 Fig. 15-7, p. 622 Fig. 15-8, p. 626 10.3 Mass Spectrometry of Some Common Functional Groups Alcohols • Fragment by two pathways • Alpha cleavage • Dehydration Mass Spectrometry of Some Common Functional Groups Amines • Aliphatic amines undergo characteristic a cleavage Mass Spectrometry of Some Common Functional Groups Carbonyl compounds • Ketones and aldehydes with C-H three atoms away from carbonyl group undergo McLafferty rearrangement Mass Spectrometry of Some Common Functional Groups • Ketones and aldehydes also undergo a cleavage of bond between carbonyl group and neighboring carbon Worked Example 10.2 Identifying Fragmentation Patterns in a Mass Spectrum The mass spectrum of 2-methylpentan-3-ol is shown below. What fragments can you identify? Worked Example 10.2 Identifying Fragmentation Patterns in a Mass Spectrum Strategy • Calculate the mass of the molecular ion, and identify the functional groups in the molecule. Then write the fragmentation processes you might expect, and compare the masses of the resultant fragments with the peaks present in the spectrum. Worked Example 10.2 Identifying Fragmentation Patterns in a Mass Spectrum Solution • 2-Methylpentan-3-ol, an open-chain alcohol, has M+ = 102 and might be expected to fragment by a cleavage and by dehydration. These processes would lead to fragment ions of m/z = 84, 73, and 59. Of the three expected fragments, dehydration is not observed (no m/z = 84 peak), but both a cleavages take place (m/z = 73, 59). Interpreting Mass Spectra Mass spectrum of 2,2-dimethylpropane (MW = 72) • 2,2-dimethylpropane fragments so easily that no M+ peak observed when electron-impact ionization is used • “Soft” ionization methods can prevent fragmentation of molecular ion Interpreting Mass Spectra • Base peak in mass spectrum of 2,2-dimethylpropane is at m/z = 57 • • m/z = 57 corresponds to t-butyl cation Molecular ion fragments to give most stable carbocation Mass Spectrometry in Biological Chemistry: Time-of-Flight (TOF) Instruments MALDI-TOF mass spectrum of chicken egg-white lysozyme • Peak at 14,307.7578 daltons (amu) is due to the monoprotonated protein