Chapter 5 Stereochemistry Chiral Molecules Created by Professor William Tam & Dr. Phillis Chang Ch. 5 - 1 About The Authors These Powerpoint Lecture Slides were created and prepared by Professor William Tam and his wife Dr. Phillis Chang. Professor William Tam received his B.Sc. at the University of Hong Kong in 1990 and his Ph.D. at the University of Toronto (Canada) in 1995. He was an NSERC postdoctoral fellow at the Imperial College (UK) and at Harvard University (USA). He joined the Department of Chemistry at the University of Guelph (Ontario, Canada) in 1998 and is currently a Full Professor and Associate Chair in the department. Professor Tam has received several awards in research and teaching, and according to Essential Science Indicators, he is currently ranked as the Top 1% most cited Chemists worldwide. He has published four books and over 80 scientific papers in top international journals such as J. Am. Chem. Soc., Angew. Chem., Org. Lett., and J. Org. Chem. Dr. Phillis Chang received her B.Sc. at New York University (USA) in 1994, her M.Sc. and Ph.D. in 1997 and 2001 at the University of Guelph (Canada). She lives in Guelph with her husband, William, and their son, Matthew. Ch. 5 - 2 1. Chirality & Stereochemistry An object is achiral (not chiral) if the object and its mirror image are identical Ch. 5 - 3 A chiral object is one that cannot be superposed on its mirror image Ch. 5 - 4 1A. The Biological Significance of Chirality Chiral molecules are molecules that cannot be superimposable with their mirror images O N O ● One enantiomer causes birth defects, NH O the other cures morning sickness O Thalidomide Ch. 5 - 5 HO HO NH OMe Tretoquinol OMe OMe ● One enantiomer is a bronchodilator, the other inhibits platelet aggregation Ch. 5 - 6 66% of all drugs in development are chiral, 51% are being studied as a single enantiomer Of the $475 billion in world-wide sales of formulated pharmaceutical products in 2008, $205 billion was attributable to single enantiomer drugs Ch. 5 - 7 2. Isomerisom: Constitutional Isomers & Stereoisomers 2A. Constitutional Isomers Isomers: different compounds that have the same molecular formula ● Constitutional isomers: isomers that have the same molecular formula but different connectivity – their atoms are connected in a different order Ch. 5 - 8 Examples Molecular Formula C4H10 Constitutional Isomers and Butane 2-Methylpropane Cl C3H7Cl Cl 1-Chloropropane and 2-Chloropropane Ch. 5 - 9 Examples Molecular Formula C2H6O Constitutional Isomers CH3 O CH3 OH and Ethanol Methoxymethane O C4H8O2 OH and Butanoic acid OCH3 O Methyl propanoate Ch. 5 - 10 2B. Stereoisomers Stereoisomers are NOT constitutional isomers Stereoisomers have their atoms connected in the same sequence but they differ in the arrangement of their atoms in space. The consideration of such spatial aspects of molecular structure is called stereochemistry Ch. 5 - 11 2C. Enantiomers & Diastereomers Stereoisomers can be subdivided into two general categories: enantiomers & diasteromers ● Enantiomers – stereoisomers whose molecules are nonsuperposable mirror images of each other ● Diastereomers – stereoisomers whose molecules are not mirror images of each other Ch. 5 - 12 Geometrical isomers (cis & trans isomers) are: ● Diastereomers e.g. Ph Ph and Ph (cis) Cl Ph (trans) Cl Cl H H Cl and H H (cis) (trans) Ch. 5 - 13 Subdivision of Isomers Isomers (different compounds with same molecular formula) Constitutional Isomers (isomers whose atoms have a different connectivity) Stereoisomers (isomers that have the same connectivity but differ in spatial arrangement of their atoms) Enantiomers (stereoisomers that are nonsuperposable mirror images of each other) Diastereomers (stereoisomers that are NOT mirror images of each other) Ch. 5 - 14 3. Enantiomers and Chiral Molecules Enantiomers occur only with compounds whose molecules are chiral A chiral molecule is one that is NOT superposable on its mirror image The relationship between a chiral molecule and its mirror image is one that is enantiomeric. A chiral molecule and its mirror image are said to be enantiomers of each other Ch. 5 - 15 OH H (I) OH (2-Butanol) HO H (I) and (II) are nonsuperposable mirror images of each other (II) Ch. 5 - 16 4. A Single Chirality Center Causes a Molecule to Be Chiral The most common type of chiral compounds that we encounter are molecules that contain a carbon atom bonded to four different groups. Such a carbon atom is called an asymmetric carbon or a chiral center and is usually designated with an asterisk (*) Ch. 5 - 17 Cl Me C* Et H H Cl Cl H Me Et (III) Et Me (IV) mirror (III) and (IV) are nonsuperposable mirror images of each other Ch. 5 - 18 Cl Me C Me H H Cl Me Cl Me Me (V) H Me (VI) mirror (V) and (VI) are superposable ⇒ not enantiomers ⇒ achiral Ch. 5 - 19 4A. Tetrahedral vs. Trigonal Stereogenic Centers Chirality centers are tetrahedral stereogenic centers H Tetrahedral stereogenic center ⇒ chiral HO OH H Et * Me (B) Me * Et (A) mirror (A) & (B) are enantiomers Ch. 5 - 20 Cis and trans alkene isomers contain trigonal stereogenic centers Trigonal stereogenic center ⇒ achiral Ph H H Ph H Ph Ph H (D) (C) mirror (C) & (D) are identical Ch. 5 - 21 4A. Tetrahedral vs. Trigonal Stereogenic Centers Chirality centers are tetrahedral stereogenic centers Cis and trans alkene isomers contain trigonal stereogenic centers Ch. 5 - 22 5. More about the Biological Importance of Chirality (+)-Limonene (limonene enantiomer found in oranges) (-)-Limonene (limonene enantiomer found in lemons) Ch. 5 - 23 Thalidomide The activity of drugs containing chirality centers can vary between enantiomers, sometimes with serious or even tragic consequences For several years before 1963 thalidomide was used to alleviate the symptoms of morning sickness in pregnant women Ch. 5 - 24 In 1963 it was discovered that thalidomide (sold as a mixture of both enantiomers) was the cause of horrible birth defects in many children born subsequent to the use of the drug O N O O NH O O Thalidomide (cures morning sickness) N O NH O O enantiomer of Thalidomide (causes birth defects) Ch. 5 - 25 6. How to Test for Chirality: Planes of Symmetry A molecule will not be chiral if it possesses a plane of symmetry A plane of symmetry (mirror plane) is an imaginary plane that bisects a molecule such that the two halves of the molecule are mirror images of each other All molecules with a plane of symmetry in their most symmetric conformation are achiral Ch. 5 - 26 Plane of symmetry Cl Me Me H achiral Cl Me Et H No plane of symmetry chiral Ch. 5 - 27 7. Naming Enantiomers: R,S-System Recall: OH H (I) OH HO H (II) Using only the IUPAC naming that we have learned so far, these two enantiomers will have the same name: ● 2-Butanol This is undesirable because each compound must have its own distinct name Ch. 5 - 28 7A. How to Assign (R) and (S) Configurations Rule 1 ● Assign priorities to the four different groups on the stereocenter from highest to lowest (priority bases on atomic number, the higher the atomic number, the higher the priority) Ch. 5 - 29 Rule 2 ● When a priority cannot be assigned on the basis of the atomic number of the atoms that are directly attached to the chirality center, then the next set of atoms in the unassigned groups is examined. This process is continued until a decision can be made. Ch. 5 - 30 Rule 3 ● Visualize the molecule so that the lowest priority group is directed away from you, then trace a path from highest to lowest priority. If the path is a clockwise motion, then the configuration at the asymmetric carbon is (R). If the path is a counter-clockwise motion, then the configuration is (S) Ch. 5 - 31 Example ① Step 1: ② or ③ H O H C ① Step 2: HO H3C ④ C H O ③ (2-Butanol) ② or ③ ④ C ② CH 3 C H2 (H, H, H) (C, H, H) Ch. 5 - 32 ① ④ ③ OH OH Me Et ② Et Me OH OH Me H HO Et Me H Et = H Arrows are clockwise Et Me (R)-2-Butanol Ch. 5 - 33 Other examples ① Cl ④ ③ H HO Counterclockwise Cl CH3 HO CH3 (S) ② ② OCH3 ④ H3C ① Br ③ CH2CH3 OCH3 Br Clockwise (R) CH2CH3 Ch. 5 - 34 Other examples ● Rotate C–Cl bond such that H is pointed to the back ② Cl Cl ④ Br HO H ③ H OH ① Br Cl Br Clockwise OH (R) Ch. 5 - 35 Other examples ● Rotate C–CH3 bond such that H is pointed to the back ② H I H3C OCH3 ④ OCH3 ① H I H3C ③ Counter-clockwise H 3C OCH3 I (S) Ch. 5 - 36 Rule 4 ● For groups containing double or triple bonds, assign priorities as if both atoms were duplicated or triplicated e.g. C O as C O O C C C as C C C C C C as C C C C C C Ch. 5 - 37 Example ③ ④ CH3 ② H HO ① Compare CH3 & CH CH2 Thus, CH3 (S) CH=CH2 CH CH2 : equivalent to H H C C H C C (H, H, H) CH CH2 (C, C, H) Ch. 5 - 38 Other examples ② (R) OH ④ H ③ CH3 Cl ① O ③ H 2C ④ OH H ② CH3 ① Cl O (S) ② C (O, O, C) ③ C (O, H, H) Ch. 5 - 39 8. Properties of Enantiomers: Optical Activity Enantiomers ● Mirror images that are not superposable H Cl H3CH2C H * * CH3 H3C mirror Cl CH2CH3 Ch. 5 - 40 Enantiomers have identical physical properties (e.g. melting point, boiling point, refractive index, solubility etc.) Compound bp (oC) (R)-2-Butanol 99.5 (S)-2-Butanol 99.5 mp (oC) (+)-(R,R)-Tartaric Acid 168 – 170 (–)-(S,S)-Tartaric Acid 168 – 170 (+/–)-Tartaric Acid 210 – 212 Ch. 5 - 41 Enantiomers ● Have the same chemical properties (except reaction/interactions with chiral substances) ● Show different behavior only when they interact with other chiral substances ● Turn plane-polarized light on opposite direction Ch. 5 - 42 Optical activity ● The property possessed by chiral substances of rotating the plane of polarization of plane-polarized light Ch. 5 - 43 8A. Plane-Polarized Light The electric field (like the magnetic field) of light is oscillating in all possible planes When this light passes through a polarizer (Polaroid lens), we get planepolarized light (oscillating in only one plane) Polaroid lens Ch. 5 - 44 8B. The Polarimeter A device for measuring the optical activity of a chiral compound a =observed optical rotation Ch. 5 - 45 8C. Specific Rotation observed rotation temperature 25 [a]D = wavelength of light (e.g. D-line of Na lamp, l=589.6 nm) c a x ℓ concentration length of cell of sample in dm solution (1 dm = 10 cm) in g/mL Ch. 5 - 46 The value of a depends on the particular experiment (since there are different concentrations with each run) ● But specific rotation [a] should be the same regardless of the concentration Ch. 5 - 47 Two enantiomers should have the same value of specific rotation, but the signs are opposite CH3 CH3 * H HO 25 * CH2CH3 [a] = + 13.5 D o H3CH2C 25 mirror H OH [a] = 13.5 o D Ch. 5 - 48 9. The Origin of Optical Activity Ch. 5 - 49 Ch. 5 - 50 Two circularlypolarized beams counter-rotating at the same velocity (in phase), and their vector sum Two circularly-polarized beams counter-rotating at different velocities, such as after interaction with a chiral molecule, and their vector sum Ch. 5 - 51 9A. Racemic Forms An equimolar mixture of two enantiomers is called a racemic mixture (or racemate or racemic form) A racemic mixture causes no net rotation of plane-polarized light equal & opposite rotation by the enantiomer rotation H CH3 OH C2H5 (R)-2-Butanol H 3C H HO C2H 5 (S)-2-Butanol (if present) Ch. 5 - 52 9B. Racemic Forms and Enantiomeric Excess A sample of an optically active substance that consists of a single enantiomer is said to be enantiomerically pure or to have an enantiomeric excess of 100% Ch. 5 - 53 An enantiomerically pure sample of (S)-(+)2-butanol shows a specific rotation of +13.52 25 [a]D = +13.52 A sample of (S)-(+)-2-butanol that contains less than an equimolar amount of (R)-(–)-2butanol will show a specific rotation that is less than 13.52 but greater than zero Such a sample is said to have an enantiomeric excess less than 100% Ch. 5 - 54 Enantiomeric excess (ee) ● Also known as the optical purity % enantiomeric = excess mole of one enantiomer moles of other enantiomer total moles of both enantiomers x 100 ● Can be calculated from optical rotations % enantiomeric = excess * observed specific rotation specific rotation of the pure enantiomers x 100 Ch. 5 - 55 Example ● A mixture of the 2-butanol enantiomers showed a specific rotation of +6.76. The enantiomeric excess of the (S)-(+)2-butanol is 50% % enantiomeric = excess * +6.76 +13.52 x 100 = 50% Ch. 5 - 56 10. The Synthesis of Chiral Molecules 10A. Racemic Forms CH3CH2CCH3 + H H ( )-CH3CH2CHCH3 OH O Butanone (achiral molecules) Ni Hydrogen (achiral molecules) ( )-2-Butanol (chiral molecules; but 50:50 mixture (R) & (S)) Ch. 5 - 57 Ch. 5 - 58 10B. Stereoselective Syntheses Stereoselective reactions are reactions that lead to a preferential formation of one stereoisomer over other stereoisomers that could possibly be formed ● enantioselective – if a reaction produces preferentially one enantiomer over its mirror image ● diastereoselective – if a reaction leads preferentially to one diastereomer over others that are possible Ch. 5 - 59 O O + OEt F racemate ( ) O OEt F racemate ( ) H , H2O heat OH + EtOH F racemate ( ) O H2O lipase OH F () (> 69% ee) O + OEt + EtOH F (+) (> 99% ee) Ch. 5 - 60 11. Chiral Drugs Of the $475 billion in world-wide sales of formulated pharmaceutical products in 2008, $205 billion was attributable to single enantiomer drugs NC HO O F NMe2 Escitalpram (anti-depressant ) HO NH3 CO2 H L-DOPA (treatment for Parkinson's) Ch. 5 - 61 Naproxen (anti-inflammatory drug) CO2H CH3 MeO NaO2C S Cl CH3 HO CH3 N Singulair (asthma and allergy treatment) Ch. 5 - 62 12. Molecules with More than One Chirality Center Diastereomers ● Stereoisomers that are not enantiomers ● Unlike enantiomers, diastereomers usually have substantially different chemical and physical properties Ch. 5 - 63 Br Cl C H HO C H CH3 Br H C Cl OH H C CH3 (II) Br C H Cl (III) CH3 C H HO Br H C Cl H C CH3 OH (IV) (I) Note: In compounds with n tetrahedral stereocenters, the maximum number of stereoisomers is 2n. Ch. 5 - 64 Br Cl C H HO C H CH3 Br H C Cl OH H C CH3 (II) Br C H Cl (III) CH3 C H HO Br H C Cl H C CH3 OH (IV) (I) (I) & (II) are enantiomers to each other (III) & (IV) are enantiomers to each other Ch. 5 - 65 Br Cl C H HO C H CH3 Br H C Cl OH H C CH3 (II) Br C H Cl (III) CH3 C H HO Br H C Cl H C CH3 OH (IV) (I) Diastereomers to each other: ● (I) & (III), (I) & (IV), (II) & (III), (II) & (IV) Ch. 5 - 66 12A. Meso Compounds Compounds with two stereocenters do not always have four stereoisomers (22 = 4) since some molecules are achiral (not chiral), even though they contain stereocenters For example, 2,3-dichlorobutane has two stereocenters, but only has 3 stereoisomers (not 4) Ch. 5 - 67 H (I) CH3 C Br CH3 C Br H H C Br CH 3 (III) H C Br CH3 Br Br Br Br H C CH 3 (II) C CH3 H H C CH 3 (IV) C H CH3 Note: (III) contains a plane of symmetry, is a meso compound, and is achiral ([a] = 0o). Ch. 5 - 68 H (I) CH3 C Br CH3 C Br H H C Br CH 3 (III) H C Br CH3 Br Br Br Br H C CH 3 (II) C CH3 H H C CH 3 (IV) C H CH3 (I) & (II) are enantiomers to each other and chiral (III) & (IV) are identical and achiral Ch. 5 - 69 H (I) CH3 C Br CH3 C Br H H C Br CH 3 (III) H C Br CH3 Br Br Br Br H C CH 3 (II) C CH3 H H C CH 3 (IV) C H CH3 (I) & (III), (II) & (III) are diastereomers Only 3 stereoisomers: ● (I) & (II) {enantiomers}, (III) {meso} Ch. 5 - 70 12B. How to Name Compounds with More than One Chirality Center a 2,3-Dibromobutane H Br Br 2 ① Br ③ C2: (R) configuration C1 H 3 4 1 ● Look through C2–Ha bond b a④ H 2 ② C3 (H, H, H) (Br, C, H) Ch. 5 - 71 ● Look through C3–Hb bond Br a H Br 2 1 b ① 4 ③ H 3 CH3 CH3 b H Br C4 3 ④ ② C2 (H, H, H) (Br, C, H) C3: (R) configuration ● Full name: (2R, 3R)-2,3-Dibromobutane Ch. 5 - 72 13. Fischer Projection Formulas 13A. How To Draw and Use Fischer Projections Fischer Projection HO H3C Et Br COOH Ph COOH COOH Br Ph Br Ph Et OH Et OH CH3 CH3 Ch. 5 - 73 H Me COOH Ph H Me OH H H Ph OH COOH COOH HO Fischer Me Projection Ph COOH H HO H H Me H Ph Ch. 5 - 74 Cl H H H3C Cl H Cl CH3 H3C (I) (2S, 3S)-Dichlorobutane H CH3 (II) (2R, 3R)-Dichlorobutane CH3 CH3 H Cl Cl H CH3 Cl enantiomers mirror Cl H H Cl CH3 (I) and (II) are both chiral and they are enantiomers with each other Ch. 5 - 75 Cl H 3C H H CH3 Cl CH3 (III) (2S, 3R)-Dichlorobutane H Cl H Cl CH3 Plane of symmetry (III) is achiral (a meso compound) (III) and (I) are diastereomers to each other Ch. 5 - 76 14. Stereoisomerism of Cyclic Compounds a meso compound achiral mirror H Me H Me Me Me Me H Me H H H enantiomers Plane of symmetry Ch. 5 - 77 14A. Cyclohexane Derivatives 1,4-Dimethylcyclohexane Me Plane of symmetry Me Me Me H Me Me • Both cis- & trans1,4-dimethylcyclohexanes are achiral and optically inactive H H cis-1,4-dimethyl cyclohexane Me • The cis & trans Me forms are H trans-1,4-dimethyl cyclohexane diastereomers Ch. 5 - 78 1,3-Dimethylcyclohexane Plane of symmetry Me * * Me cis-1,3-dimethyl cyclohexane Me Me H H (meso) ● cis-1,3-Dimethylcyclohexane has a plane of symmetry and is a meso compound Ch. 5 - 79 1,3-Dimethylcyclohexane NO plane of symmetry Me * * Me trans-1,3-dimethyl cyclohexane Me H Me Me H H H Me enantiomers ● trans-1,3-Dimethylcyclohexane exists as a pair of enantiomers Ch. 5 - 80 1,3-Dimethylcyclohexane ● Has two chirality centers but only three stereoisomers cis-1,3-dimethyl cyclohexane Me H H Me (meso) trans-1,3-dimethyl cyclohexane Me H Me Me H H H Me enantiomers Ch. 5 - 81 1,2-Dimethylcyclohexane mirror H H Me Me Me Me H H enantiomers ● trans-1,2-Dimethylcyclohexane exists as a pair of enantiomers Ch. 5 - 82 1,2-Dimethylcyclohexane ● With cis-1,2-dimethylcyclohexane the situation is quite complicated mirror Me H Me (I) H Me H Me H (II) ● (I) and (II) are enantiomers to each other Ch. 5 - 83 ● However, (II) can rapidly be interconverted to (III) by a ring flip Me 2' 1' (I) mirror H Me Me H 2 Me H 1 (II) H Me Me 2 H 1 H (III) Ch. 5 - 84 ● Rotation of (III) along the vertical axis gives (I) Me 2' 1' (I) H Me Me H 2 Me H C1 of (II) and (III) become C2’ of (I) & C2 of (II) and (III) become C1’ of (I) 1 (II) H Me Me 2 H 1 (III) H Ch. 5 - 85 Me 2' 1' (I) H Me Me H 2 Me H Although (I) and (II) are enantiomers to each other, they can interconvert rapidly (I) and (II) are 1 (II) H Me Me 2 H 1 (III) H achiral Ch. 5 - 86 15. Relating Configurations through Reactions in Which No Bonds to the Chirality Center Are Broken If a reaction takes place in a way so that no bonds to the chirality center are broken, the product will of necessity have the same general configuration of groups around the chirality center as the reactant Ch. 5 - 87 Same configuration O Me H Me Ph H OH H H Me H NaBH4 MeOH Me NaCN H Br DMSO Ph Same configuration H CN Ch. 5 - 88 15A. Relative and Absolute Configurations Chirality centers in different molecules have the same relative configuration if they share three groups in common and if these groups with the central carbon can be superposed in a pyramidal arrangement Y A X A B II C B I C The chirality centers in I and II have the same relative configuration. Their common groups and central carbon can be superposed. Ch. 5 - 89 The absolute configuration of a chirality center is its (R) or (S) designation, which can only be specified by knowledge of the actual arrangement of groups in space at the chirality center (R)-2-Butanol (S)-2-Butanol H OH HO H enantiomers Ch. 5 - 90 16. Separation of Enantiomers: Resolution Resolution – separation of two enantiomers O e.g. OH R * R' (racemic) O O Cl O Me P h C F3 (Mosher acid chloride) R R' O Me C F3 Ph (1 O O + R : R' O Me C F3 Ph 1) diastereomers usually separable either by flash column chromatography or recrystallization etc. Ch. 5 - 91 Kinetic Resolution OH OH R * R1 R2 (racemic) R * OH R1 R2 + R * R1 O R2 ● One enantiomer reacts “fast” and another enantiomer reacts “slow” Ch. 5 - 92 e.g. Me3Si t * i BuOOH, Ti(O Pr)4 OH HO COOEt HO COOEt (-)-DET: (D)-(-)-Diethyl Tartrate R' OH C5H11 C5H11 43% (99%ee) 42% (99%ee) Me3Si O OH + (-)-DET C5H11 (racemic) Me3Si Me3Si Me3Si S OH H * stop reaction at 50% * maximum yield = 50% H R OH R' Ch. 5 - 93 17. Compounds with Chirality Centers Other than Carbon R4 R1 R3 Si H R2 R1 R4 R1 R2 Ge R2 R2 R3 N R3 X R1 S O Ch. 5 - 94 18. Chiral Molecules That Do Not Possess a Chirality Center P(Ph)2 (Ph)2P P(Ph)2 (Ph)2P (S)-BINAP (R)-BINAP enantiomers Ch. 5 - 95 mirror H C Cl C C H H Cl Cl H C C C Cl enantiomers Ch. 5 - 96 END OF CHAPTER 5 Ch. 5 - 97