Type your name and netid: FIRSTNAME LASTNAME NETID ACADEMIC INTEGRITY I, _____________________________________________agree to abide by the Cornell University Code of Academic Integrity in completing this assignment. I am aware that the Code of Academic Integrity specifies that all answers must be my own work based on my own knowledge of the course content. Post-Section Genetics of Selection & Hardy-Weinberg Equilibrium Worksheet (20 pts) 5 points are for section participation, 15 are for the answers on this worksheet. Type answers to the following questions directly into this file using a different colored font and save it as Genetics of Selection_YourNETID.pdf. Upload the completed worksheet as a pdf by 9:00PM Sunday. Section participation score: __ / 5 Question 1. Cystic fibrosis is a genetically determined disease that causes an overproduction of fluid and mucus in the lungs and sweat glands. Cystic fibrosis occurs at a surprisingly high frequency in certain human populations; one in 25 people of European descent is a carrier of the CF allele. Scientists have often wondered if CF persists in these populations because those with one copy of the CF allele may have higher resistance to diseases that cause fluid to leave the body such as cholera. Use the Radford simulator that you used in section. To access the online simulator go to: http://www.radford.edu/~rsheehy/Gen_flash/popgen/ Question 1. You will run two simulations using the following relative fitness values collected from two different locations (N=1000). Here A1 is the normal gene and A2 is the CF gene. Location 1 Location 2 A1A1 0.4 1.0 A1A2 1.0 0.9 A2A2 0.4 0.8 When initially sampled, allele frequencies at the two localities are as follows: f(A1) = 0.99, f(A2) = 0.01 a) Set the population p value (initial frequency of A1 allele) at 0.99, number of generations at 100, set population size equal to 1000, and number of populations to 1. Set Fitness values at: A1A1 = 0.4, A1A2 = 1.0, and A2A2 = 0.4. Select Go. Observe how f(A2), and the genotype frequencies change over time in Population 1 and answer the following. b) Paste a screenshot of the Change in A1 and A2 Allele Frequencies Over Time and the Genotype Frequencies graph below. [btw – if you hover your mouse over the graph a camera icon will appear at the top allowing you the option of downloading a png of the graph.] Paste the Change in A1 and A2 Allele Frequencies Over Time and the Genotype Frequencies graph here: (i) The most advantageous genotype at ‘Location 1’ is:_____ (1 pt) (Total: 6 pts) (ii) Describe what is happening in this population to the three genotypes and the two alleles: (1 pt) (Total: 7 pts) (iii) What predictions can you make about allele loss or fixation if the scenario continues for another 100 generations? (1 pt) (Total: 8 pts) c) Set the initial frequency of A1 allele at 0.01, number of generations at 100, set population size equal at 1000, and number of populations at 1. Set Fitness values at: A1A1 = 1.0, A1A2 = 0.9, and A2A2 = 0.8. Select Go. Observe how the frequency of the A2 allele, and the genotypic frequencies change over time in Population 2 and answer the following. d) Paste a screenshot of the Change in A1 and A2 Allele Frequencies Over Time and the Genotype Frequencies graph below. [btw – if you hover your mouse over the graph a camera icon will appear at the top allowing you the option of downloading a png of the graph.] Paste the Change in A1 and A2 Allele Frequencies Over Time and the Genotype Frequencies graph here: (i) The most advantageous genotype at ‘Location 2’ is:_________ (1 pt) (Total: 9 pts) (ii) In this location A1 is: (circle one) (1 pt) (Total: 10 pts) Additive Dominant Recessive (iii) What happens to the frequency of A1A2 and A1A1 over time? Why? (1 pt) (Total: 11 pts) (iv) What predictions can you make about allele and genotype loss or fixation if the scenario continues for another 100 generations? (1 pt) (Total: 12 pts) [more questions below!] Question 2. In some populations of gray squirrels, a mutation will occasionally produce jet black (A2A2) or brown-black (A1A2) squirrels. You sample 85 individuals in from a population in Kent, Ohio and observe the following: Phenotype Gray Brown-Black Jet Black Genotype A1A1 A1A2 A2A2 Counts 55 12 18 a) Is this population in Kent, Ohio in HWE? Perform the necessary calculations and show all of your work (you will not receive credit for the correct answer if you do not give the formula you used to calculate it). Write one sentence stating whether the population is in HWE. Round to the hundredths. If the sum is > 3.84, the observed numbers of genotypes are different from those expected based on HardyWeinberg proportions. (4 pts) (Total: 16 pts) You sample 85 individuals from another locality near Battle Creek, Michigan and the counts are as follows: Phenotype Gray Brown-Black Jet Black Genotype A1A1 A1A2 A2A2 Counts 11 48 26 b) Is the population close to Hardy-Weinberg equilibrium? Perform the necessary calculations and show all of your work (you will not receive credit for the correct answer if you do not give the formula you used to calculate it). Write one sentence stating whether the population is in HWE. Round to the hundredths. If the sum is > 3.84, the observed numbers of genotypes are different from those expected based on Hardy-Weinberg proportions. (4 pts) (Total: 20 pts)