Chapter 6: Chemical Bonding and Molecular Structure Week 2 – Bonding, Lewis structures and shapes of molecules 6.1 Fundamentals of Bonding Fundamentals of bonding There are three types of interactions within a molecule: • Electrons and nuclei attract one another • Electrons repel each other • Nuclei repel each other The hydrogen molecule H2 Fundamentals of bonding • These three interactions are balanced to give the molecule its greatest stability • This balance is achieved when the electron density is situated between the nuclei of bonded atoms • This shared electron density is called a covalent bond • Attractive energy between nuclei and electrons overcomes repulsions from nuclei-nuclei and electron-electron interactions • Covalent bond = “chemical bond in which two atoms share one or more pairs of electrons Fundamentals of bonding Bond length and bond energy • Bond length is the distance at which the molecule has the maximum • energetic advantage over the separated atoms • Bond energy is the energy required to break the bond (kJ mol-1), it is • always positive • Each different chemical bond has a characteristic bond length and energy Bond length • >300 pm apart = no interaction • 74 pm = maximum stability • Closer than that has too much repulsion! • Bond length = separation distance at which the molecule has the maximum energetic advantage over the separated atoms 6 Bond energy • Bond energy = the amount of energy required to break the bond • Measured in kJ mol-1 • Multiply the energy of one bond (7.22 × 10-19 J) by Avogadro’s constant (6.022 × 1023 mol-1) • Bond energy of H2 = 435 kJ mol-1 7 Covalent Bonds • Covalent bond—A bond formed by sharing electrons between atoms • Molecule—A group of atoms held together by covalent bonds Covalent Bonds • Main group elements undergo reactions that leave them with eight valence electrons (or two for hydrogen), so that they have a noble gas electron configuration. • Nonmetals can achieve an electron octet by sharing an appropriate number of electrons in covalent bonds. Covalent Bonds Covalent bonding in hydrogen (H2): • Spherical 1s orbitals overlap to give an egg-shaped region. • Two electrons between the nuclei, providing 1s2 configuration of helium. • H-H, H:H and H2 all represent a hydrogen molecule. Multiple Covalent Bonds • Single bond—A covalent bond formed by sharing one electron pair. • Represented by a single line: H-H • Double bond—A covalent bond formed by sharing two electron pairs. • Represented by a double line: O=O • Triple bond—A covalent bond formed by sharing three electron pairs. • Represented by a triple line: N≡N POLARITY (Unequal electron sharing) • H2 and F2 share electrons equally • What about HF? • Effective nuclear charge of F greater than that of H (F has greater pull for electrons) • Known as a polar covalent bond • “a bond that possesses an asymmetric distribution of electrons” 12 Partial charges (δ+ and δ-) • Remember how electrons have a negative charge? • Fluorine has a partial negative charge (δ-) • Hydrogen has a partial positive charge (δ+) 13 Partial charges (δ+ and δ-) • We signify that this molecule has a variation in electron density by the arrow you see under the diagram • Arrow points from δ+ to δ• We make the δ+ end into a plus sign! 14 Fundamentals of bonding Unequal electron sharing Electronegativity gives a numerical value of how strongly an atom attracts the electrons in a chemical bond Trend in the periodic table Electronegativity • Atoms of each element have a characteristic ability to attract electrons • Electronegativity = “A measure of the ability of an atom in a molecule to attract the shared electrons in a chemical bond” 16 Electronegativity trends • Metals = low electronegativities • Nonmetals = high electronegativities 17 Electronegativity = χ (chi) • Polar bonds = bonds between atoms of different electronegativities • Δχ= χ (F) –χ(H) = 4.0 - 2.1 = 1.9 18 Polar Covalent Bonds and Electronegativity • Electronegativity differences of less than 0.5 result in nonpolar covalent bonds. • Differences up to 1.9 indicate increasingly polar covalent bonds. • Differences of 2 or more indicate substantially ionic bonds. • There is no dividing line between covalent and ionic bonds; most bonds fall between these categories. Polar Molecules • Molecular polarity is due to individual bond polarities and lone-pair contributions. Electrons are displaced toward the more electronegative atom. Polar Molecules • Molecular polarity depends on the shape of the molecule. • Symmetrical molecules can have polar bonds and be non-polar overall. Polar Molecules • Polarity has a dramatic effect on the physical properties of molecules particularly on melting points, boiling points, and solubilities. 6.5 Properties of Covalent Bonds Properties of covalent bonds • Dipole moment: • Most chemical bonds are polar (one end slightly positive, the other slightly negative). • Bond polarities can lead to molecules with dipole moment. • Dipole moment depend on bond polarities (Δχ) and on molecular shape. Properties of covalent bonds Properties of covalent bonds • Bond length: • Bond length of a covalent bond is the nuclear separation distance at which the molecule is most stable. • At this distance, attractive interactions are maximised relative to repulsive interactions. • Bond lengths vary between 70 and 250 pm (1pm = 10-12m). Properties of covalent bonds • Bond energy: • • • • It is the amount of energy that must be supplied to break a chemical bond. Bond energies increase as more electrons are shared between the atoms. Bond energies increase as the Δχ between bonded atoms increases. Bond energies decrease as bonds become longer. 6.2 Ionic Bonding Ionic bonding • Bonds formed between atoms of very different electronegativities are predominantly ionic in character • Cations (+ve) from Groups 1 & 2 • Anions (-ve) from Groups 16 & 17 29 Ionic bonding • Compounds formed between elements of very different electronegativities are ionic • Most ionic compounds are solids with high melting points • They are held together by the attractive forces between oppositely charged ions Ionic compounds don’t share electrons in a bond (NOT SIGMA BONDS) • Form a lattice Lattice energies • Amount of energy required (in kJ mol-1) to break the lattice apart • Depend on the charge and size of the ions • Increase cation size, decrease lattice energy • Increase anion size, decrease lattice energy 31 6.3 Lewis Structures 4.6 Molecular Formulas and Lewis Structures • Lewis structure—A molecular representation that shows both the connections among atoms and the locations of lone-pair valence electrons • Lone pair—A pair of electrons that is not used for bonding 4.6 Molecular Formulas and Lewis Structures Drawing Lewis Structures • Lewis Structures for Molecules Containing C, N, O, X (Halogen), and H • C forms four covalent bonds and often bonds to other carbon atoms. • N forms three covalent bonds and has one lone pair of electrons. • O forms two covalent bonds and has two lone pairs of electrons. • Halogens (X) form one covalent bond and have three lone pairs of electrons. • H forms one covalent bond. Lewis Structures • Show how compounds are bonded • Differentiate between bonding and nonbonding electrons • The first step in developing a bonding description of a molecule 36 Lewis structures The conventions • An atom is represented by its elemental symbol • Only the valence electrons appear • A line represents one pair of electrons that is shared between two atoms (double bond : 2 lines, triple bond : 3 lines…) • Dots represent the nonbonding electrons on that atom (nonbonding pairs are called lone pairs) Lewis structures The conventions Lewis structures (5 Step Procedure) • Step 1: Count the valence electrons • Step 2: Assemble the bonding framework using single bonds • Step 3: Place three nonbonding electron pairs on each outer atom except H • Step 4: Assign the remaining valence electrons to inner atoms • Step 5: Minimise formal charges on all atoms 39 EXAMPLE = SO2 • Step 1: Count the valence electrons. If the species is an ion, add or subtract one electron for each negative or positive charge respectively • S=6 • O=6 • SO2= [6+(2×6)] = 18 valence electrons 40 Electronegativity trends • Metals = low electronegativities • Nonmetals = high electronegativities 41 EXAMPLE = SO2 • Step 2: Assemble the bonding framework using single bonds • Outer atoms are usually the more electronegative • Usually one inner atom attached to two or more other atoms • Is sulfur or oxygen more electronegative? 4 electrons used O S O 42 EXAMPLE = SO2 • Step 3: Place three nonbonding pairs of electrons on each outer atom except H • Each outer atom (except H) is associated with eight electrons (four pairs of electrons) • Octet rule • Nonbonding pairs are called lone pairs 16 electrons used O S O 43 EXAMPLE = SO2 • Step 4: Assign the remaining valence electrons to inner atoms • We’ve ‘used’ 16 electrons, and Step 1 told us there is 18 electrons in this molecule • 2 electrons left 18 electrons used O S O 44 EXAMPLE = SO2 • Step 5: Minimise formal charges on all atoms • Making sure our structure makes sense! Formal charge (valence electrons of free atom) - (electrons assigned in Lewis structure) • Lone pair electrons ‘belong’ to the atom • Electrons in bonds are shared between the atoms O S O 45 EXAMPLE = SO2 O S O Formal charge (valence electrons of free atom) - (electrons assigned in Lewis structure) Valence electrons of atom S O 6 Electrons assigned in Lewis structure 4 Formal charge (6-4) = +2 Valence electrons of atom 6 Electrons assigned in Lewis structure 7 Formal charge (6-7) = -1 • We can minimise these formal charges to give a better structure! 46 EXAMPLE SO2 • We can minimise these formal charges! • Convert one lone pair from each O into a bond O S O Valence electrons of atom S O S O O 6 Electrons assigned in Lewis structure 6 Formal charge (6-6) = 0 Valence electrons of atom 6 Electrons assigned in Lewis structure 6 Formal charge (6-6) = 0 47 More about Formal Charges • Formal charges can’t always equal zero • Make sure negative formal charges are on the more electronegative atoms • Formal charges are NOT THE SAME as partial charges (δ+ or δ-) 48 Resonance Structures • Sometimes there’s more than one Lewis structure possible • Resonance structures • Eg. NO3• 24 valence electrons • Three N-O bonds use 6 electrons • Three lone pairs on each O uses another 18 • Formal charges: O = -1, N = +2 • We can minimise these formal charges 49 Resonance Structures • Move one lone pair from O to form a bond • We can do that three times! • But which one is right? 50 Resonance Structures • NONE- no single Resonance structure is an accurate representation of NO3• Experiments show each N-O bond is of equal length (but double bonds are SHORTER than single bonds!) • Double-headed arrow emphasises that a complete depiction requires ALL the resonance structures • Electrons don’t ‘flip back and forth’ 51 Lewis structures Resonance structures • Composites of equivalent Lewis structures • Resonance structures differ only in the position of the electrons, not atoms CO and NO: Pollutants or Miracle Molecules? • CO is a poison and, NO, a pollutant in the environment. • In 1992, it was also discovered that these molecules are key chemical messengers in the body. • CO and NO are highly soluble and can diffuse from one cell to another, where they stimulate production of guanylyl cyclase. • Guanylyl cyclase controls the production of cyclic GMP, which regulates many cellular functions. CO and NO: Pollutants or Miracle Molecules? • CO is associated with long-term memory. When CO production is blocked, long-term memories are no longer stored, and memories that previously existed are erased. When CO production is stimulated, memories are again laid down. • NO fights infections and tumors, transmits messages between nerve cells and is associated with learning and memory, sleeping, and depression. It is also a vasodilator, a substance that allows blood vessels to relax and dilate. 6.4 Valence-shell-electron-pair-repulsion theory Valence Shell Electron Pair Repulsion (VSEPR) theory • Gives the 3D structure • VSEPR determines the shape of a molecule based on the repulsion between pairs of electrons • Electrons around an inner atom within a molecule will be situated as far apart as possible in the preferred 3D structure 56 VSEPR Procedure • 1. Draw the Lewis structure of the molecule • 2. Count the number of sets* of bonding pairs and lone pairs of electrons around the inner atom Number of sets of electron pairs Geometry of sets of electron pairs 2 Linear 3 Trigonal planar 4 Tetrahedral 5 Trigonal bipyramidal 6 Octahedral * VSEPR doesn’t distinguish between single, double and triple bonds- each is treated as one set 57 VSEPR Procedure • 3. Modify the geometry to account for the magnitudes of repulsions between sets of electron pairs, depending on if they are bonding (BP) or lone pairs (LP) • Repulsions in the order LP-LP > BP-LP > BP-BP 58 Two sets: Linear geometry • Beryllium hydride (BeH2) H Be H • Carbon dioxide (CO2) O C O • Both Linear, 180° between each atom 59 Three sets: Trigonal planar geometry • Boron trifluoride (BF3) F B 120° between each bond F F • Nitrite ion (NO2-) N N O O O O Due to lone pair has ‘bent’ molecular shape 115° between each bond 60 Four sets: Tetrahedral geometry • Methane (CH4) has tetrahedral molecular shape H H C H 109.5° between each bond H • Ammonia (NH3) has trigonal pyramidal shape H N H 107° between each bond H 61 Four sets: Tetrahedral geometry • Water (H2O) has bent molecular shape O H H 104.5° between each bond • Tetrahedral geometry has three shapes • Dependant on number of lone pairs 62 Five sets: Trigonal bipyramidal • Phosphorous pentachloride (PCl5) has trigonal bipyramidal geometry Cl Cl P Cl Cl Cl • Sulfur tetrafluoride (SF4) has two possibilities- trigonal pyramid or seesaw molecular shape- but seesaw is more stable 63 Five sets: Trigonal bipyramidal • Chlorine trifluoride (CF3) has T-shaped molecular shape F Cl F F • Triiodide ion (I3-) has linear shape I I I 64 Five sets: Trigonal bipyramidal • Trigonal bipyramidal geometry has four shapes Depend on number of lone pairs 65 Six sets: Octahedral geometry • Sulfur hexafluoride (SF6) has octahedral shape • Replacement of any atom is equivalent 66 Six sets: Octahedral geometry • Chlorine pentafluoride (ClF5) has a square pyramidal shape F F F F Cl F • Xenon tetrafluoride (XeF4) has square planar molecular shape F F F Xe F 67 Six sets: Octahedral geometry • Three possible molecular shapes for octahedral geometry 68 VSEPR Conclusion • Draw the Lewis structure • Count the number of sets of electron pairs, NOT the number of atoms! • Eg. SF4 is NOT tetrahedral like CH4 it’s based on trigonal bipyramidal geometry! • Base the geometry on the repulsions Repulsions are in the order LP-LP > BP-LP > BP-BP 69