CLASSIFICATION & STRUCTURE OF BACTERIA Assistant Professor Microbiology OBJECTIVES 1. Classify Bacteria 2. Identify Unicellular nature of Bacterial cell 3. Review selective toxicity of antimicrobials 1. CLASSIFICATION OF BACTERIA • • • • • • Nomenclature Binomial Linnean System Genus species Italicize Example Escherichia coli Used for bacteria, fungi and parasites • Not used for viruses(single name e.g. Poliovirus) 1. CLASSIFICATION OF BACTERIA • Criteria for classification 1. Growth requirement a. O2 requirements e.g. Aerobe, Anaerobe, Facultative anaerobe, Strict anaerobe, Strict aerobe b. CO2 requirements e.g. Carboxyphilic c. Salt requirements e.g. Halophilics (Salt loving) 2. Microscopy a. Gram staining e.g. Gram Pos & Gram Neg due to cell wall differences 1. CLASSIFICATION OF BACTERIA 3. Biochemical Reactions • Oxidase test, Catalase test 4. Serology • Strep pyogenes –Rheumatic fever nephritogenic strain, M types 2, 42, 49, 56, 57, and 60 5. DNA-DNA Similarity 6. Ribosomal RNA analysis 1. CLASSIFICATION OF BACTERIA • Bergey's Manual of Systematic Bacteriology • Classification of medically imp bacteria based upon criteria like Gram reaction, motility, cell structure, etc 1. CLASSIFICATION OF BACTERIA I. Gram-negative eubacteria that have cell walls Group 1: The spirochetes Treponema, Borrelia, Leptospira Group 2: Aerobic/microaerophilic, motile helical/vibroid gram-negative bacteria Group 4: Gram-negative aerobic/microaerophilic rods and cocci Group 5: Facultatively anaerobic gramnegative rods Group 6: Gram-negative, anaerobic, straight, curved, and helical rods Group 9: The rickettsiae and chlamydiae Campylobacter , Helicobacter, Spirillum, Bordetella, Brucella, Legionella, Neisseria, Pseudomonas Escherichia (and related coliform bacteria) Klebsiella, Proteus, Salmonella, Shigella, Vibrio Bacteroides, Fusobacterium Rickettsia, Coxiella, Chlamydia 1. CLASSIFICATION OF BACTERIA II. Gram-positive bacteria that have cell walls Group 17: Gram-positive cocci Group 18: Endospore-forming grampositive rods and cocci Group 19: Regular, nonsporing grampositive rods Group 20: Irregular, nonsporing grampositive rods Group 21: The mycobacteria Enterococcus, Staphylococcus, Streptococcus Bacillus,Clostridium Listeria Actinomyces, Corynebacterium Mycobacterium Group 22–29: Actinomycetes Nocardia III. Cell wall-less eubacteria: The mycoplasmas or mollicutes Group 30: Mycoplasmas Mycoplasma, Ureaplasma STRUCTURE OF BACTERIAL CELL • Shape, Arrangement, Color & Size – Three basic shapes- Cocci (round), Bacilli (rod), Spirochetes (spiral) – Pleomorphism – Shape due to cell wall – Arrangement is due to orientation at cell division • Pairs-Diplococci • Chains-Streptococci • Clusters-Staphylococci STRUCTURE OF BACTERIAL CELL • Shape, Arrangement, Color & Size –Color-Gram Staining gives purple or red color to bacteria –Staining reaction-cell wall differences –Size-0.2 to 5µ • Clinical importance Above parameters help us identify certain bacteria BASIC STRUCTURE OF PROKARYOTE 2. Unicellular nature of Bacterial cell • Prokaryotic cell is a unicellular structure • It has nucleoid, cytoplasm and outer covering called Cell envelop • Prokaryotic cell lacks nuclear membrane- DNA is present loosely in area called Nucleoid • Cytoplasm contains ribosomesmaller size 70S with 30S & 50Ssubunits • Insoluble granules stores-e.g. metachromatic granules of Corynaebacterium diphtheriae Metachromatic granules CELL ENVELOPE – Structure that surrounds the cytoplasm of bacteria – In Gram positive, two components:• Cytoplasmic membrane • Thick peptidoglycan layer (Cell wall) – In Gram negative, three components:• Cytoplasmic membrane (Also called Inner membrane) • Thin peptidoglycan layer • Outer membrane Gram + cell envelope CELL ENVELOPE IN GRAM +ve AND GRAM –ve BACTERIA BACTERIAL CELL STRUCTURE • Teichoic Acid – Outer layer of Gram +ve bacteria – Can induce septic shock like Endotoxin of Gram –ve – Attach Staphylococci to mucosal surface BACTERIAL CELL STRUCTURE • LIPOPOLYSACCHARIDE – LPS of outer membrane of Gram –ve is Endotoxin – Produce hypotension, fever, shock – Three components • • • Lipid A is toxic component Core polysaccharide of 5 sugars Outer polysaccharide of up to 25 sugar- O somatic Ag BACTERIAL CELL STRUCTURE Outside Cell Wall • Capsule – Layer covering entire bacterium – Polysaccharide except Bacillus anthracis-polypeptide capsule – Determine sero-type e.g. Strep pneumoniae 84 serotypes – Virulence factor- Negative charge resist phagocytosis. Bacteria that lose capsule-become avirulent BACTERIAL CELL STRUCTURE Outside Cell Wall • Pili (Fimbrae) –Hair-like filament extend from cell surface –Mainly in Gram –ve –Two functions • Attachment of bacterium to specific receptor in human tissue (Mutant Ns lose piliavirulent) • Sex pili form attachment during conjugation BACTERIAL CELL STRUCTURE Outside Cell Wall • Flagella – – – – Long whip-like appendage-motility Subunit-flagellin Energy provided by ATP Spirochetes have flagellum likeaxial filament – Importance for two reasons • UTI causing bacteria move up in bladder • Lab identification using anti-sera e.g. Salmonella BACTERIAL CELL STRUCTURE Outside Cell Wall • Glycocalyx (Slime Layer) – polysaccharide coating – allows the bacteria to adhere firmly to various structures e.g. skin, heart valves, and catheters – Pseudomonas aeruginosa- cystic fibrosis – Staphylococcus epidermidis- endocarditis – Streptococcus mutans-dental plaque and caries BACTERIAL CELL STRUCTURE • Spores – Highly resistant structures – In response to adverse conditions – Sporulation occurs when sources of carbon and nitrogen are depleted – Inside the cell – bacterial DNA, a small amount of cytoplasm, cell membrane, peptidoglycan, very little water – a thick, keratin-like coat -dipicolinic acid Selective toxicity of antimicrobials • Antimicrobials used with aim to target structures and functions of bacteria not present in Eukaryote human cells – Cell Wall – Ribosome – Metabolic pathways Selective toxicity of antimicrobials • Penicillin target the Cell wall not present in Eukaryote cells • Tetracyclin, Macrolides target 30S & 50S subunits of ribosome • Co-trimoxazole attacks Folic acid synthesis pathway unique to Bacteria • Quinolones inhibit Topoisomerase IV enzyme of bacteria MCQs GEN BACTERIOLOGY You have isolated a cell with a peptidoglycan cell wall. What other structure can you safely assume the cell has? A. a mitochondrion B. a Nuclear membrane C. a plasma membrane D. a nucleus Ans: c MCQs GEN BACTERIOLOGY A young boy is suffering from acute pharyngitis. You perform a throat swab and isolate a Gram positive cocci β- hemolytic colonies on blood agar. This bacterium protects itself from osmotic lysis by which of following structures? A. Cell membrane B. Peptidoglycan layer C. Hydrolytic enzymes D. Ribosomes E. DNA Ans: B MCQs GEN BACTERIOLOGY All of the following are found in the cell walls of Gram positive bacteria except: A. Lipid A B. Peptidoglycan C. N-acetylglucosamine D. Lipoteichoic acid E. Teichoic acid Ans: A