1 Master Course Outline CHEM& 263 Organic Chemistry w/Lab III Course Description: This course is a continuation of CHEM& 262 for students desiring three quarters of organic chemistry. FMO theory, nonclassical carbocations, heterocycles, rearrangements, amino acids, lipids, carbohydrates, proteins and nucleic acids. 3 lecture hours. Satisfies specified elective requirement for the AA degree. Credits: 3 Prerequisites: A grade of “C-” or better in CHEM& 262 or instructor permission Recommended Preparation: none Co-requisites: none Learning Outcomes: 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. Aldehydes and ketones: nomenclature, structure and bonding of the carbonyl group, physical properties, and sources Reactions of aldehydes and ketones: nucleophilic addition, cyanohydrins formation, acetal formation Acetals as protecting groups Reactions with primary and secondary amines The Wittig reaction and alkene synthesis Stereoselective addition to carbonyl groups Oxidation of aldehydes Steroscopic analysis of aldehydes and ketones Carboxylic acids: nomenclature, structure and bonding, physical properties, and sources Acidity of carboxylic acids; substituents and acid strength Ionization of substituted benzoic acids Dicarboxylic cids Salts of carboxylic acids Synthesis of carboxylic acids : by carboxylation of Grignard reagents, and preparation and hydrolysis of nitriles Reactions of carboxylic acids: acid catalyzed esterification, intramolecular ester formation;lactones, decarboxylation of malonic acid and related compounds Spectroscopic properties of carboxylic acids. Carboxylic acid derivatives: nomenclature, structure and reactivity, and sources General mechanism for Nucleophilic acyl substitution Nucleophilic acyl substitution in acyl chlorides, acid anhydrides 8/7/2013 2 20. 21. 22. 23. 24. 25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 44. 45. 46. 47. 48. 49. 50. 51. 52. 53. 54. 55. 56. 57. 58. 59. 60. 61. 62. 63. 64. 65. 66. Acid catalyzed and base catalyzed ester hydrolysis Reactions of esters with ammonia and amines, Grignard reagents, Lithium aluminum hydride Amides: acid and base hydrolysis Preparation and hydrolysis of nitriles Addition of Grignard reagents to nitriles Spectroscopic analysis of carboxylic acid derivatives Enols and enolates: The Claisen condensation, acetoacetic ester synthesis, the malonic ester synthesis Amines: nomenclature, structure and bonding, and physical properties Basicity Tetraalkylammonium salts as phase-transfer catalysts Reactions that lead to amines: alkylation of ammonia, the Gabriel synthesis Lithium aluminum hydride reduction of an amide Reductive animation Reactions of amines: with alkyl halides, the Hofmann elimination Electrophilic aromatic substitution in arylamines Nitrosation of alkyl and arylamines Synthetic transformations of aryl diazonium salts Azo coupling Spectroscopic analysis of amines Phenols: nomenclature, structure and bonding, and physical properties, and sources Acidity of phenols: substituent effect on acidity Naturally occurring phenols Reactions of phenols: electrophilic aromatic substitution, acylation, carboxylation Preparation of aryl ethers from phenols Cleavage of aryl ethers by hydrogen halides Claisen rearrangement of allyl aryl ethers Oxidation of phenols Spectroscopic Analysis of phenols Classification of carbohydrates Fischer projections and D,L notation Aldotetroses, aldopentoses, and aldohexoses Cyclic forms of carbohydrates: furanose and pyranose forms Mutarotation Carbohydrate conformation: the anomeric effect Ketoses Deoxy sugars Disaccharides Polysaccharides Amino acids, peptides and proteins Classification of amino acids, stereochemistry, acid base behavior Synthesis and reactions of amino acids Some biochemical reactions of amino acids Transamination Introductory peptide structure determination Amino acid analysis Partial hydrolysis of peptides End group analysis 8/7/2013 3 67. 68. 69. 70. 71. 72. 73. 74. 75. 76. 77. 78. 79. 80. 81. 82. 83. 84. Amino group protection Carboxyl group protection Peptide bond formation Secondary, tertiary and quaternary structures of polypeptides and proteins Nucleosides, nucleotides, and nucleic acids Pyrimidines, and purines Phosphodiesters, oligonucleotides, and polynucleotides Secondary and tertiary structure of DNA Replication of DNA Ribonucleic acids, Protein biosynthesis AIDS DNA sequencing The human genome project Synthetic polymers: some background, nomenclature, classification- chain growth and step growth, and additon polymers Chainbranching in free-radical polymerization Branching in polyethylene by inter and intramolecular hydrogen transfer Anionic and cationic polymerization Polyamides, polyesters, polycarbonates, polyurethanes, and copolymers Course Resources/Textbooks/Website: These textbooks are required for this course as well as the beginning and second course of the sequence, CHEM 261 and 262 Organic Chemistry, 8th Edition, Frances Carey and Robert Guiliano, McGraw Hill, ISBN: 987-0-07-340261-1 Organic Chemistry Laboratory Manual, 3rd Edition, Anne Padías, Hayden McNeil, ISBN: 978-07380-3748-6 Making the Connection2, A How-To Guide for Organic Chemistry Lab Techniques, Anne Padías, Hayden McNeil, ISBN: 978-1-4292-8812-5 Students are also required to purchase an Organic Chemistry Laboratory Notebook, Hayden McNeil, ISBN: 978-1-930882-46-1 Other ancillary materials are available from the publisher such as Student Solution Manual, which is recommended but optional. If you have questions about the text, please contact Julie Nelson at jnelson@ghc.edu. A molecular model kit is also highly recommended These items are all available at the GHC Bookstore. Academic Integrity: All forms of cheating, falsification, and plagiarism are against the rules of this course and of Grays Harbor College. Students who are unsure what constitutes academic dishonesty are responsible for asking the instructor for clarification. Instances of intentional academic dishonesty will be dealt with severely. Disabilities: Students who have documented disabilities that require accommodations in compliance with the Americans with Disabilities Act should contact the Disability Support Services coordinator as 8/7/2013 4 well as the instructor of the course in order to ensure that together we create an optimal environment for educational achievement. W Day, the final day to officially withdraw from a course, is the Thursday of the seventh week (Thursday of the fourth week for summer quarter). Students who do not withdraw by that date will receive the grades they have earned, regardless of whether they are attending the course or completing the work. Students who are considering withdrawal are strongly advised to consult with the instructor, advisor and financial aid prior to withdrawing. The only withdrawals allowed after W Day are complete withdrawals from all courses. 8/7/2013