DISCUSSION FORUM doi: 10.1111/j.1365-3083.2008.02159.x .................................................................................................................................................................. Beginning of the End of (Understanding) the Immune Response Z. Dembic Abstract Department of Oral Biology, University of Oslo, Oslo, Norway Received 13 June 2008; Accepted in revised form 3 July 2008 Correspondence to: Dr Z. Dembic, Department of Oral Biology, University of Oslo, PB 1052 Blindern, N 0316 Oslo, Norway. E-mail: zlatko.dembic@odont.uio.no The algorithm about the workings of the immune system should incorporate in its basic form the ability to explain several basic features: the ability to reject pathogens, to respond differently to invasions by class switching, to retain memory of rejecting past infections, the regulatory T-cell formation and the acquisition of a life-long antigen tolerance in adults. The Danger and the two self–non-self theories – Pathogenicity (Janeway) and the Associated Antigen Recognition (Langman and Cohn) – cannot explain satisfactorily one or more of these issues. By failing to find appropriate solutions to help their corresponding basic algorithms to be operative, these theories negate, instead of finding explanations (no matter how complicated) for interpretations of certain results, one of them being the existence of a regulatory cell as a physiological component of the immune system. On the other hand, the integrity model can incorporate regulatory T cells in a basic algorithm of the workings of the immune system, explaining it as a downregulation of the immune response provided advantageous commensalism prevails over disadvantages of parasitism. According to the Danger (Matzinger) [1, 2] and Integrity (Dembic) [3–6] models, the immune system (at least comprising dendritic cells, macrophages, granulocytes, NK, B lymphocytes, plasma and T cells) distinguishes damaged from healthy tissue, and uses this information as an alarm that allows the activation of naive T or B cells via antigenic peptides or antigens respectively. In the Pathogenicity hypothesis (Janeway) [7–9], the immune system gets activated by discriminating between self and non-self provided and alarm is sounded via recognition of pathogen-specific molecular patterns by the innate immunity. The latter hypothesis, however, ignores signals emanating from any damaged tissue. Similarly, the control of the immune response is supposedly intrinsic (i.e. tissues do not control the extent of the immune response, as it is the case according to the Danger [2] and Integrity hypotheses [5, 6]). The extent and cessation of the response as well as the memory formation remains solely under the control of the initial interactions of cells enabling peptide ⁄ MHC–T-cell receptor and antigen–Bcell receptor interactions (as opposed to tissue control of the immune response in the Danger and Integrity models). In another self–non-self recognition hypothesis – the Associated Antigen Recognition by Langman and Cohn [10, 11], and as discussed by Cohn [12] and in this issue (Cohn, discussion forum), the self–non-self discrimination [13] is at the core of the B- and T-lymphocyte activation, which effectively neglects, as a principle, the pathogen recognition via molecular pattern receptors, as well as the alarm from the damaged tissue. I believe this represents an older view of the function of the immune system, and is, basically, an oversimplification. The complexity of tissue interactions and cellular signalling in our body is extensive, especially in the immunological and neurological systems, but luckily – finite, because it is determined by the number of functionally active genes. A computer model of the immune system should, besides the simplest basic working algorithm, allow an implementation of such complex interactions. It seems that an oversimplified algorithm (such as presented in this issue by Cohn) can put restrictions on the workings of the immune system, such as the impossibility of the ‘regulatory T-cell’ formation, acquisition of a lifelong antigen tolerance later in life and effector cell-type switching. I see a problem with this, because out of these three only the last one can be allowed by the additional arguments to the basic algorithm. So, one out of three that can be explained (with a complication) is bad. In fact, the first two issues are denied to be real, because their existence would falsify the theory! How can we then explain the observations to the contrary? Why do the regulatory cells seem unreal and why do liver transplants 2008 The Author Journal compilation 2008 Blackwell Publishing Ltd. Scandinavian Journal of Immunology 68, 381–382 381 382 A Response to Cohn, 2008 Z. Dembic .................................................................................................................................................................. that can stay as ‘self’ throughout the lifetime of patients pose like some fantastic achievements? Are those reports really bad interpretations of our results and experimentations, or are we just too proud to admit that we were wrong in accepting the self–non-self theory in the first place, or for that matter any theory that forbids such explanations? Perhaps, if we compare how the above-mentioned hypotheses treat these two ‘impossibilities’, we might be closer to an answer. The Pathogenicity and other alarm evoking hypotheses (Danger and Integrity) allow effector class switching in its simplest ‘algorithm’ (according to my understanding). The Danger and Integrity hypotheses, but not the Pathogenicity, allow life-long tolerance formation. However, only the Integrity hypothesis allows the regulatory cell formation. Why does the Danger (and all other) model(s) negate the suppressors? Well, it boils down to the Integrity model algorithm that, in its simplest form, allows symbiosis or commensalisms, whereas the Danger model treats all foreign micro-organisms as potential dangerous matter (and the other theories, as non-self). Consequently, if micro-organisms do damage, they are dangerous, but if they provide beneficent properties, there is no signal in the Danger theory that can allow protection of that benefit. The same is true for self–non-self hypotheses. The Integrity hypothesis, on the other hand, by allowing in the algorithm the protection of micro-organisms that benefit a larger organism, makes possible an explanation for the formation of regulatory cells! The signals from damaged tissue due to invasion of micro-organisms can be counteracted by positive signals from a tissue. These could transmit ‘profit’ or some selective advantage for particular organism that possesses an immune system. The immune system would be able to translate such messages and generate a protection for such beneficent micro-organisms. If we can accept such an understanding, then we might rename the immune system into a guardian (gate keeper) system. And, then we might begin to understand the last and the most recently discovered property of the immune system – the regulatory T cell. References 1 Matzinger P. Tolerance, danger, and the extended family. Annu Rev Immunol 1994;12:991–1045. 2 Matzinger P. Friendly and dangerous signals: is the tissue in control? 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