Project summary Title: Cell-to-cell movement of Potyviruses Background: Potyviridae is the largest family of plant viruses with the majority of the members in the Potyvirus genus. Various aspects of these viruses have been well studied, but the cell-to-cell movement is still unclear. Currently, it is a mystery as to the form (virion or ribonucleoprotein complex) and mechanism in which the virus moves. Many of the proteins have been characterized and their function(s) determined, but no dedicated movement protein has been found. Studies have alluded to the formation of a complex to faciliatate movement because mutational analysis of several proteins impact the ability of the virus to move to neighboring cells. Therefore, studies on the movement of Potyviruses will supplement the known characteristics of this vast genus. Hypothesis: Potyviruses move cell-to-cell through the plasmodesmata on the cellular cytoskeleton network as a virion faciliatated by a complex of proteins. The goal is to characterize Potyvirus cell-to-cell movement with the following specific aims: 1. Visualize Potyvirus movement during an infection using TuMV. a. Use electron microscopy to observe TuMV movement in infected tissue. b. Use fluorescently labeled protein(s) to observe TuMV movement in infected tissue. 2. Determine mechanism of transport to neighboring cells. a. Identify viral movement protein and specific cytoskeleton component interactions and if disruption influences viral movement. b. Identify secretion pathway interactions and investigate if inhibition of pathway inhibits viral movement. Rationale/Significance: Many Potyviruses such as Potato virus Y, Plum pox virus, Turnip mosaic virus, Soybean mosaic virus, and Papaya ringspot virus cause major yield losses in food crops. Movement is required for systemic viral infection, therefore, study of virus movement may lead to new antiviral strategies. Studies of viral movement will provide insight into the spread of infection which is an important stage of the viral life cycle. Project Description Title: Cell-to-cell movement of Potyviruses Background: Potyviridae is the largest family of plant viruses, encompassing approximately a third of all known plant viruses. This family consists of six genera including Potyvirus, which contains nearly 200 members (38). Insects such as aphids and mites facilitate transmission of these plant viruses. As nonenveloped flexuous rods, they range from 650 to 900 nm long and 10 to 15 nm wide (Fig. 1) (37). Potyviruses are positive sense RNA viruses with an approximately 10 Kb genome that contains one large Fig 1) Electron micrograph of purified open reading frame (ORF) and a small overlapping Potyvirus virions from Walsh and ORF (Fig. 2) (28). Ten of the viral proteins are Jenner 2002. These viruses are flexuous translated as a polyprotein, which is then processed filaments that range from 650 to 900 into 10 mature proteins by several viral proteases (28). nm long and 10 to 15 nm in diameter. Although a majority of the mature proteins has multiple defined functions, none has movement as their primary function (Table 1) (36). Fig 2) Genome organization of Potyviruses. This is a depiction of the infectious clone of Turnip mosaic virus (TuMV) with green fluorescent protein (GFP) inserted between two viral proteins. GFP will be a free mature protein after cleavage by viral proteases. A varying number of proteins are need for movement of either ribonucleoprotein (RNP) complexes or virions, the two forms of virus cell-to-cell movement. Tobamoviruses require the movement protein (MP) for cell-to-cell movement as either an RNP complex or movement vesicle complex (22). Potexviruses use a group of three proteins known as the triple gene block to facilitate RNP complex movement through the plasmodesmata (PD) (18). The MP of Cowpea mosaic virus forms tubular structures to potentiate virion spread to neighboring cells (26). Multiple proteins have secondary functions involved in movement with the main hypothesized contributors as coat, viral protein that is genome linked (VPg), and cytoplasmic inclusion (CI) Page 1 of 8 Project Description proteins (36). Coat Proteins Properties protein forms the P1 (32–64 K) Trypsin-like serine proteinase, virion with C-terminal autocleavage approximately 2,000 Symptomatology individual coat HC-Pro (56–58 K) Aphid transmission Self-interaction proteins to form the Systemic movement helical virion with a Suppression of gene silencing 3.4 nm pitch (36). Synergism and symptom development Mutations within the Papain-like cysteine proteinase, coat protein have been C-terminal autocleavage found to retain virion P3 (37 K) Plant pathogenicity formation while 6K1 N/A abolishing cell-to-cell CI (70 K) ATPase:RNA helicase movement of the virus Cell-to-cell movement (7, 8). The VPg is 6K2 Anchoring the viral replication complex to membranes attached to the 5’end NIa (49 K) Cellular localization of the viral genome to VPg involved in genome replication mimic a cap structure Trypsin-like serine proteinase (acts in cis and in trans) and stabilize the RNA Protein-protein interaction molecule. The VPg is NIb (58 K) RNA-dependent RNA polymerase (RdRp) involved in replication Involved in genome replication and encapsidation CP (28–40 K) Aphid transmission Cell-to-cell and systemic movement (35). Within the Virus assembly virion, VPg can be P3NPIPO (26 K) N/A detected at a specific Plasmodesmata localization end with an epitope Table 1) Adapted from Urcuqui-Inchima et al. 2001 listing the mature viral probe to determine proteins along with weight and function. polarity and may be involved in directional movement (27). Cytoplasmic inclusion (CI) protein generates the characteristic cytopathic effect in the form of pinwheel structures for Potyviruses. Studies indicate the CI in cell-to-cell movement observing multimers transversing the PD that connect neighboring cells (29). In a recent paper, P3NPIPO was found to localize to the PD and hypothesized to be a part of the movement complex, but actual function is still not known (40, 41). HC-Pro participates in long distance movement, rather than cell-to-cell movement and facilitates viral systemic infection through the vascular tissue (5). For Potyviruses, it seems a complex of proteins is involved in virus movement. Whether the virus moves as an RNP complex or as a virion, movement generally utilizes cellular machinery to transport the virus to neighboring cells through the PD (13, 23). Multiple components of the cellular cytoskeleton, microfilaments, intermediate filaments and Page 2 of 8 Project Description microtubules, associate with viral proteins during cell-to-cell movement (2, 17). Localization to the cytoskeleton occurs during various stages of infection as in viral replication and cell-to-cell movement, both through a vesicle complex. Tobacco mosaic virus movement protein associates with microtubules and microfilaments and may potentiate cell-to-cell spread via movement vesicles complexes (3, 20). Currently, the exact mode and mechanism of Potyvirus cell-to-cell mediated movement is unknown. It is unclear whether the virus moves as a virion or as a ribonucleoprotein complex. What is clear is that the virus requires multiple proteins in order for movement to occur. Hypothesis: Potyviruses move cell-to-cell through the PD on the cellular cytoskeleton network as a virion facilitated by a complex of proteins. This proposal will investigate the mechanism of potyviral cell-to-cell mediated movement using Turnip mosaic virus (TuMV). The goal is to characterize Potyvirus cell-to-cell movement with the following specific aims: 1. Visualize Potyvirus movement during an infection using TuMV. a. Use electron microscopy to observe TuMV movement in infected tissue. b. Use fluorescently labeled protein(s) to observe TuMV movement in infected tissue. 2. Determine mechanism of transport to neighboring cells. a. Identify viral movement protein and specific cytoskeleton component interactions and if disruption influences viral movement. b. Identify secretion pathway interactions and investigate if inhibition of pathway inhibits viral movement. Rationale and significance: This proposal will use multiple microscopy techniques to observe TuMV viral movement in infected Arabidopsis tissue. Microscopy has made great advances with resolution and increased number of available markers used to characterize a variety of virus infections. Electron microscopy can be used to visualize viral virions and protein complexes within infected tissue. A large variety of fluorescent protein labels are commercially available, standardized, and commonly used for scientific research in localization studies. TuMV infection in a model plant organism such as Arabidopsis has many benefits including availability of a large library of mutants and characterized genome to facilitate identification of possible host-viral protein interactors. Mechanism of viral movement is a crucial characteristic that needs to be uncovered for the largest family of plant viruses. Potyviruses infect a wide range of economically important crops as in soybeans, potatoes, and stone fruits (38). If the mechanism of viral spread can be determined, then an antiviral strategy may be developed from the knowledge gained with this proposal. Crops would be protected to increase yield, which would be beneficial to farmers and augment the available food supply. Page 3 of 8 Project Description Experimental approach: Aim 1: Visualize Potyvirus movement during an infection using TuMV. Viruses have to spread to neighboring cells to proliferate, thereby continuing viral propagation to establish an infection. In plant viruses, both cell-to-cell and long distance movement are required to achieve systemic infection, often facilitated via a movement protein. PD are cytoplasmic connections to neighboring cells that viruses exploit for cell-to-cell movement (1, 14, 25). This allows the virus to spread without encountering the major obstacle of plant cell walls. Numerous studies have observed this phenomenon using various microscopy techniques. Electron and fluorescent microscopy will be employed in this proposal to observe TuMV cell-to-cell movement. Transmission electron microscopy (TEM) can resolve objects in the nanometer range including nucleic acids and proteins. This method was used to visualize Cowpea mosaic virus and Grapevine fanleaf a) b) virus MP tubules formed during virus movement (Fig. Fig 3) a) An excerpt from Silva et al. 2002 depicting CPMV MP 3) (21, 32). RNP complexes tubules traversing PD to allow virions to move between bundle can also be observed with sheath cell (BSC) and phloem parenchyma cell (PPC). b) From TEM as in the case of ORF3 Laporte et al. 2003 showing the tubular formation of GFLV MP expression of Groundnut across PD. rosette virus (Fig. 4) (34). An ultrathin layer of sample is stained and presented to an electron beam within a pressure-controlled chamber. A digital camera collects electron waves passing through the specimen to generate an image. The thickness and staining of the sample influences the quality of the image. Often, tissues require a microtome to produce ultrathin samples that can be used for TEM. Heavy atom, negative, stains such as uranyl acetate are used to absorb electrons to enhance contrast around the specimen. Optimization of both the tissue sectioning and staining technique will need to be done to Fig. 4) TEM of RNP complexes obtain the highest quality image. A consultant with the Iowa formed within cytoplasmic State Microscopy and Nanoimaging Facility will assist in inclusion. Inset is a crossoptimizing the TEM process for observing TuMV movement section of an RNP complex. in infected Arabidopsis leaf tissue. To obtain infected tissue for TEM, wild type Col-0 Page 4 of 8 (Taliansky and Robinson 2003) Project Description Arabidopsis thaliana plants will be grown and infected with TuMV. Short day length, 12 hours, will be used to grow the Arabidopsis to maximize leaf surface area during the rosette stage. Then, TuMV infectious clone DNA will be bombarded into the leaf tissue to inoculate and allow for establishment of infection. Progress of the infection front will be tracked by green fluorescence due to the GFP insertion into the TuMV genome (Fig. 2). Tissue at the infection front will be used for TEM to observe virus movement to adjacent cells. Electron microscopy is a costly and time intensive process, but in planta observations of the movement process with relation to the rest of the cell will provide data about cytopathic effects along with movement. A recent paper by Otulak and Garbaczewska noted Potato virus Y (PVY) movement during early infection with TEM (24). They concluded that PVY has two forms, encapsidated and non-encapsidated, and both can be transported to neighboring cells. It is difficult to discern in the figures due to the low magnification and darkness of the specimen (Fig. 5) (25). Potyviruses may move as virions due a) b) to the requirement of the coat protein for Fig. 5) a) TEM of PVY infection with presence of particles within the PD. b) cell-to-cell TEM from Overall and Blackman 1996 showing PD with potentially enough movement. With optimization to visualize virus movement through the PD. TEM, it may be difficult to distinguish between virions and RNP complexes. Optimization can provide a clearer picture of Potyvirus cell-to-cell movement. If these obstacles cannot be overcome, then fluorescent microscopy is an alternative approach to examine cell-to-cell movement. Both electron and fluorescent microscopy will be used to maximize the probability of identifying the form in which the virus moves. Fluorescent microscopy is more commonly used than TEM. Fluorescently labeled antibodies allow visualization of the spatial orientation of particular targets, often to confirm interactions and/or co-localizations, when used to probe fixed tissues. Known proteins located within the PD will be probed along with viral proteins to observe cell-to-cell movement (40). TuMV infectious clone will have to be modified to remove GFP from in between P1 and HC-Pro to avoid background fluorescent and to allow potential use of GFP labeled antibodies (9). The untagged infectious clone will be bombarded into Arabidopsis leaf tissue for fluorescence microscopy as in preparation for TEM. An advantage of antibodies rather than GFP fusion proteins is the ability to probe multiple viral proteins simultaneously with antibodies containing varying flourochromes (11). This method has been used to visualize the co-localization of MPs and PD of several viruses including Tobacco mosaic virus (Fig 6) (15, 20, 30). A disadvantage of fluorescence microscopy is only visualizing labeled targets, so unknown interactors are unseen Page 5 of 8 Project Description and nonspecific labeling is a major issue. The specificity of the antibody label can be easily determined with an immunoblot to test for cross-reaction with nonspecific cellular proteins. Both or either microscopy techniques should allow detection of Potyviral cell-to-cell mediated movement. Aim 2: Determine mechanism of transport to neighboring cells. Fig. 6) Kawakami et al. 2004 showing TMV MP move cell-to-cell as part of the viral replication complex (VRC) vesicle and co-localization to the PD. These vesicles travel upon microfilaments. Green is TMV MP and blue is VRC with the arrows indicating co-localization. All viruses usurp and manipulate cellular function for proliferation including egress from the already infected cell. Plant viruses often utilize the a) b) cytoskeleton to facilitate transport to the PD or increase Fig. 7) a) Disruption of F-actin by treatment with CMV MP in J the size exclusion limit of the and without in K (Su et al. 2010) b) PVX TGBp2 containing PD by disrupting cytoskeletal vesicles budding, indicated by arrows, from the plasma structures for cell-to-cell membrane (red) by Ju et al. 2007. movement(1). TMV interacts with myosin to move RNP complex vesicles to the PD (Fig. 6) (16, 20). Cucumber mosaic virus (CMV) MP severs actin filaments to alter the PD to allow larger weight molecules to pass (Fig. 7a) (33). Some viruses such as Potato virus X require the endoplasmic reticulum and secretory pathway for viral spread (Fig. 7b) (18, 19). First, a yeast two-hybrid screen will identify any interactions between potential movement proteins from TuMV and Arabidopsis cytoskeleton components. In a yeast twohybrid screen, a transcription factor that activates an essential gene such as Gal4 is broken into two domains called the binding domain (BD) and an activation domain (AD) (10). A bait protein is fused to the BD and a prey protein is fused to the AD. If there is an interaction between the bait and prey proteins, then activation of the essential gene occurs to allow the yeast to grow on selective media. The bait protein is usually known, viral proteins for this proposal, and used to identify new interacting partners (12). An Arabidopsis cDNA library can be purchased for the Page 6 of 8 Project Description construction of all the prey proteins. Positive interactions between several viral proteins and cytoskeleton components are expected because replication vesicles of TuMV move on microfilaments (Fig. 8) (4). This previous observation suggests that TuMV cell-to-cell movement will perpetuate this interaction with cytoskeleton components. Yeast twohybrid screens are prone to false positives, therefore proper controls and multiple layers of selection are required to identify true interactions (10). In addition, the interactions are identified under in vitro conditions and may not hold true in vivo. To confirm these interactions in planta, fluorescent microscopy and co-immunoprecipitation will be used. Fig. 8) TuMV viral replication complex vesicles are colocalized to and trafficked upon microfilaments. Each vesicle contains a single viral genome. (Cotton et al. 2009) Fluorescent microscopy will be used to confirm interactions discovered by the yeast two-hybrid screen of TuMV viral proteins involved in movement and host proteins in planta (11). A variety of antibodies is commercially available with guaranteed specificity. Labeling of cytoplasmic structures and interacting viral proteins for fluorescent visualization can verify co-localization within the cell. A more sensitive approach is bimolecular fluorescent complementation (31). This technique, similar to the yeast two-hybrid, splits a fluorescent protein into two halves and fuses them to potential interacting partners. If the partner proteins interact in planta, then the fluorescent protein is reconstituted and functional. Fluorescence of the split proteins indicates subcellular localization and specific interaction because the two halves have to be spatially close to function. A second approach to confirm protein interaction is with co-immunoprecipitation (12). The interacting partners are each tagged with a different polypeptide tag. Expression of these proteins in planta allows natural interactions to occur. Then, total proteins are extracted from the plant tissue and separated via affinity column chromatography. The one of the tagged protein pairs is bound to the column under conditions that preserve protein complexes. The bound proteins are eluted and separated on a SDS-PAGE gel. Then, the proteins are transferred to membrane and immunoblotted for the other partner with an antibody. If present, then the interaction is confirmed. To understand the precise mechanism TuMV usurps to facilitate movement, disruption of select cytoskeleton components will be done to observe impact upon viral cell-to-cell spread. Previous research localizes P3NPIPO to the PD, which may suggest a similar function to that of CMV MP (6, 40). Mayhap, P3NPIPO will disrupt actin filaments at PD similar to chemical destabilizers such as Latrunculin A. Because disruption of microfilaments may influence virus transport to the PD, viral interaction with other components such as microtubules and intermediate filaments may facilitate virus movement to and across the PD. Page 7 of 8 Project Description All of these various techniques starting with the yeast two-hybrid screen will also be used to identify potential viral protein interactions with secretory pathway proteins. TuMV replication complex vesicles are generated by budding of the ER in a secretory pathway dependent process (39). Therefore, TuMV movement may require both the secretory pathway in conjunction with trafficking on cytoskeletal structures for cell-to-cell movement. Future directions: More time, money and manpower will further progress the research and understanding of Potyviruses. With the movement mechanism determined, focus can be directed towards identifying the proteins, host or viral, involved in the formation of the movement complex that facilitate virus spread. Knowing what form the virus moves as will narrow the search for protein interaction to target particular viral proteins required for movement. Research on the potential differential requirement of proteins and conditions to promote cell-to-cell and/or systemic movement of the virus will expand knowledge of plant viruses. Practical applications can be discovered by identifying inhibitors, mutants of host proteins and/or chemicals, of virus spread that has minimal impact of the growth of the plant. Identification of dominant inhibition of particular viral proteins involved in movement could be another avenue of exploration for practical application. Timeline: Aim 1 Aim 2a Aim 2b Year 1 Electron micrograph Cytoskeleton Secretion pathway and visualization of TuMV component and MP(s) MP(s) interaction movement interaction Year 2 Disruption of Disruption of Fluorescent label cytoskeleton secretory pathway Year 3 visualization of TuMV components involved involved in viral movement in viral movement movement This proposal will be accomplished in three years with people working simultaneously on various aspects. A post-doctoral scientist will visualize TuMV movement. Aim 2 will be the majority of the doctoral work of a graduate student. Both will become proficient at TEM and fluorescent microscopy by participating in a course offered by the Iowa State Microscopy and Nanoimaging Facility. Each aim has multiple parts, independent of each other, and new knowledge gained by completion of each part, without losing the relevance of each component. Page 8 of 8 References and works cited References 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. Benitez-Alfonso, Y., C. Faulkner, C. Ritzenthaler, and A. J. Maule. Plasmodesmata: Gateways to Local and Systemic Virus Infection. Molecular Plant-Microbe Interactions 23:1403-1412. Boyko, V., J. Ferralli, J. Ashby, P. Schellenbaum, and M. Heinlein. 2000. Function of microtubules in intercellular transport of plant virus RNA. Nat Cell Biol 2:826-32. Brandner, K., A. Sambade, E. Boutant, P. Didier, Y. Mely, C. Ritzenthaler, and M. Heinlein. 2008. Tobacco mosaic virus movement protein interacts with green fluorescent protein-tagged microtubule end-binding protein 1. 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Page 3 of 3 Budget Justification Personnel ($233,028) This will provide for a graduate student and postdoctoral fellow. University rates are used where graduate students and postdoctoral fellows receive a 13.3% and 20.2% fringe benefits rate respectively. The graduate student will identify the potential interaction(s) of various viral proteins and cellular components involved in spread of the virus. Once the cellular components have been identified, determine if disruption of normal function inhibits viral movement. The postdoctoral fellow will discover the form of viral cell-to-cell movement using fluorescent and electron microscopy. Equipment ($30,000) A fluorescent microscope will facilitate the progression of the project. All aims of the proposal involve fluorescent microscopy and access to a shared microscope may be limited. Therefore, a microscope solely dedicated to this project will be obtained. Travel ($9,000) Domestic and foreign travel is required to share results and attend conferences related to the field of research like American Society for Virology, RNA Society, International Congress of Virology and All-Iowa Virology Symposium. At these meetings, discussions and potential collaborations may form to assist in productive advancement of Potyvirus research and broaden knowledge base of researchers. Other Direct Costs ($114,203) A 3% inflation rate has been implemented. Materials and supplies ($61,818) General materials and supplies include general molecular biology laboratory expenses such as nuclease free tubes and tips, chemicals for solutions, cloning materials to make constructs, transcription kits to generate RNA, and microscope supplies as in slides and coverslips. Iowa State University DNA Synthesis and Sequencing Facility services are required to confirm sequence of constructs ($6/sequencing run and $0.30/base for 50 nmol DNA oligo synthesis). Funding is required to maintain upkeep of laboratory equipment and growth chambers for plants. Publication costs ($4,636) Funds are required to offset cost of publishing results to share with the scientific community. Color prints are particularly expensive, but will be required due to the nature of the data presented. Consultant services ($15,000) The Iowa State Microscopy and Nanoimaging Facility will be consulted for electron microscopy to observe viral cell-to-cell movement. One hundred hours are budgeted to included microscope time, supplies, and consultation. Computer services ($3,091) Up to date computers and software will be required to analyze data. High resolution data collected from microscopy need to be analyzed without loss of resolution to produce quality figures for presentations. Graduate Student Tuition ($29,658) Tuition support is needed for the graduate student. The rates are set for a one-quarter time nonengineering graduate student at Iowa State University for the next three years. Indirect Costs ($96,558) These are the agreed upon percentage cost for Iowa State University. Worksheet for Project Budget You should see the following tabs at the bottom of the page. You may have to scroll across to see all of them. effective 07/01/2010 revision 07/07/2010 Principal Investigator: - Start Here (yellow) - Salaries & Wages (purple) - Equip-Travel-Participants (green) - Other Direct (blue) - Subcontracts (orange) - Cumulative Budget (red) - Links (pink) Sponsor: Iowa State Univeersity Project Title: Cell-to-cell movement of Potyviruses Start Project Period: Date 8/15/11 mm/dd/yyyy Indirect Cost Rate: USDA-20% End Date 8/15/14 Total Years 3 mm/dd/yyyy 25.00% Please refer to the Indirect Cost Rate and Policy links on the Links Tab NOTE: Classification must be selected for each person in each year that funding is requested. Scroll to the Right to enter Cost Sharing Amounts > > > Running Total for Cumulative Budget Amount = $ 482,789.17 Worksheet for Project Budget - Salaries & Wages Year 1 Please select an escalation rate for all salaries below 0.00% This Fringe Benefit rate is based on the Classification selected at the left. Senior Personnel Prefix First Name Middle Init. Last Name Classification Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary 0.00 0.00 $0 0.0% $0 $0 $0 Fringe Benefit $ 1 Select one 2 Select one $0 0.0% $0 $0 $0 3 Select one $0 0.0% $0 $0 $0 4 Select one $0 0.0% $0 $0 $0 5 Select one $0 0.0% $0 $0 $0 6 Select one $0 0.0% $0 $0 $0 7 Select one $0 0.0% $0 $0 $0 8 Select one $0 0.0% $0 $0 $0 Total Senior Personnel $0 Total Senior Personnel Other Personnel Number of Personnel Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 1.00 Post Doctoral Associate $3,500 12.00 $42,000 20.2% $8,484 $50,484 $0 1.00 Graduate Students $2,000 12.00 $24,000 13.3% $3,192 $27,192 $0 0.00 Undergraduate Students $0 4.6% $0 $0 $0 0.00 Secretarial/Clerical $0 48.5% $0 $0 $0 0.00 Non-Student Hourly $0 12.0% $0 $0 $0 Select one $0 0.0% $0 $0 $0 Select one $0 0.0% $0 $0 $0 Select one $0 0.0% $0 $0 $0 Total Other Personnel $77,676 Total Other Personnel Year 1 Totals Fringes $11,676 Salaries $66,000 Worksheet for Project Budget - Salaries & Wages Year 2 Senior Personnel Prefix Middle Init. First Name Last Name Classification Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 1 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 2 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 3 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 4 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 5 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 6 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 7 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 8 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Senior Personnel $0 Total Senior Personnel Other Personnel Number of Personnel Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 1.00 Post Doctoral Associate $3,500 12.00 0.00 0.00 $42,000 20.2% $8,484 $50,484 $0 $0 1.00 Graduate Students $2,000 12.00 0.00 0.00 $24,000 13.3% $3,192 $27,192 $0 $0 0.00 Undergraduate Students $0 0.00 0.00 0.00 $0 4.6% $0 $0 $0 $0 0.00 Secretarial/Clerical $0 0.00 0.00 0.00 $0 48.5% $0 $0 $0 $0 0.00 Non-Student Hourly $0 0.00 0.00 0.00 $0 12.0% $0 $0 $0 $0 0.00 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0.00 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0.00 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Other Personnel $77,676 Year 2 Totals Fringes $11,676 Salaries $66,000 Total Other Personnel Worksheet for Project Budget - Salaries & Wages Year 3 Senior Personnel Prefix Middle Init. First Name Last Name Classification Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 1 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 2 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 3 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 4 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 5 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 6 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 7 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 8 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Senior Personnel $0 Total Senior Personnel Other Personnel Number of Personnel Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 1.00 Post Doctoral Associate $3,500 12.00 0.00 0.00 $42,000 20.2% $8,484 $50,484 $0 $0 1.00 Graduate Students $2,000 12.00 0.00 0.00 $24,000 13.3% $3,192 $27,192 $0 $0 0.00 Undergraduate Students $0 0.00 0.00 0.00 $0 4.6% $0 $0 $0 $0 0.00 Secretarial/Clerical $0 0.00 0.00 0.00 $0 48.5% $0 $0 $0 $0 0.00 Non-Student Hourly $0 0.00 0.00 0.00 $0 12.0% $0 $0 $0 $0 0.00 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0.00 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0.00 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Other Personnel $77,676 Year 3 Totals Fringes $11,676 Salaries $66,000 Total Other Personnel Worksheet for Project Budget - Salaries & Wages Year 4 Senior Personnel Prefix Middle Init. First Name Last Name Classification Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 1 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 2 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 3 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 4 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 5 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 6 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 7 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 8 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Senior Personnel $0 Total Senior Personnel Other Personnel Number of Personnel Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 0.00 Post Doctoral Associate $0 0.00 0.00 0.00 $0 20.2% $0 $0 $0 $0 0.00 Graduate Students $0 0.00 0.00 0.00 $0 13.3% $0 $0 $0 $0 0.00 Undergraduate Students $0 0.00 0.00 0.00 $0 4.6% $0 $0 $0 $0 0.00 Secretarial/Clerical $0 0.00 0.00 0.00 $0 48.5% $0 $0 $0 $0 0.00 Non-Student Hourly $0 0.00 0.00 0.00 $0 12.0% $0 $0 $0 $0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Other Personnel $0 Year 4 Totals Fringes $0 Salaries $0 Total Other Personnel Worksheet for Project Budget - Salaries & Wages Year 5 Senior Personnel Prefix Middle Init. First Name Last Name Classification Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 1 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 2 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 3 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 4 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 5 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 6 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 7 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 8 0 0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Senior Personnel $0 Total Senior Personnel Other Personnel Number of Personnel Base Salary/ Month Cal Month Acad. Month Summer Month Requested Salary Fringe Rate % Fringe Benefit $ Federal Fund Requested $ Cost-Shared / Matching Salary Fringe Benefit $ 0.00 Post Doctoral Associate $0 0.00 0.00 0.00 $0 20.2% $0 $0 $0 $0 0.00 Graduate Students $0 0.00 0.00 0.00 $0 13.3% $0 $0 $0 $0 0.00 Undergraduate Students $0 0.00 0.00 0.00 $0 4.6% $0 $0 $0 $0 0.00 Secretarial/Clerical $0 0.00 0.00 0.00 $0 48.5% $0 $0 $0 $0 0.00 Non-Student Hourly $0 0.00 0.00 0.00 $0 12.0% $0 $0 $0 $0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 0 0 Select one $0 0.00 0.00 0.00 $0 0.0% $0 $0 $0 $0 Total Other Personnel $0 Year 5 Totals Fringes $0 Salaries $0 Cumulative Totals - All Years Fringes $35,028 Salaries $198,000 Total Other Personnel rate is based on the al Senior Personnel tal Other Personnel Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 al Senior Personnel tal Other Personnel Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 al Senior Personnel tal Other Personnel Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 al Senior Personnel tal Other Personnel Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 al Senior Personnel tal Other Personnel Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 Cost-Shared / Matching Funds $ $0 $0 $0 $0 $0 $0 $0 $0 $0 Scroll to the Right to enter Cost Sharing amounts. Worksheet for Project Budget - Equipment, Travel, Participant/Trainee Support Costs Equipment Description Year 1 Year 2 Year 3 Year 4 Year 5 Year 1 Year 2 Year 3 Year 4 Year 5 Funds Requested Funds Requested Funds Requested Funds Requested Funds Requested Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds List items and dollar amount for each item exceeding $5,000 Equipment item 1 Fluroescent Microscope and supplies $30,000 2 3 4 5 6 7 8 9 10 Total funds requested for all eqiupment listed $30,000 Travel 1 Domestic Travel Costs (incl. Canada, Mexico and U.S. Possessions $1,000 $1,000 $1,000 2 Foreign Travel Costs $2,000 $2,000 $2,000 $3,000 $3,000 $3,000 Total Travel Cost Participant/Trainee Support Costs (for NSF only) 1 Tuition/Fees/Health Insurance 2 Stipend 3 Travel 4 Subsistence 5 Other Total Participant/Trainee Support Costs # of Participants/Trainees Running Total for Cumulative Budget Amount = $ 482,789.17 Worksheet for Project Budget - Equipment, Travel, Participant/Trainee Support Costs Other Direct Costs Year 1 Funds Requested 1 Materials and Supplies 2 Publication Costs 3 Consultant Services 4 ADP/Computer Services 5 Subawards/Consortium/Contractual Costs 6 Equipment or Facility Rental/User Fees 7 Alterations and Renovations 8 Graduate Student Tuition Year 2 Funds Requested Year 3 Funds Requested Year 4 Funds Requested Year 5 Funds Requested $20,000 $20,600 $21,218 $1,500 $1,545 $1,591 $10,000 $5,000 $1,000 $1,030 $1,061 $9,482 $10,043 $10,133 Summer Summer 2011 Summer 2012 Summer 2012 Summer 2013 Summer 2014 Fall Fall 2012 Fall 2013 Fall 2012 Fall 2013 Fall 2014 Spring Spring 2012 Spring 2013 Spring 2012 Spring 2013 Spring 2014 Summer Summer 2011 Summer 2012 Summer 2013 Summer 2013 Summer 2014 Fall Fall 2011 Fall 2013 Fall 2013 Fall 2013 Fall 2014 Spring Spring 2012 Spring 2013 Spring 2013 Spring 2013 Spring 2014 Summer Summer 2010 Summer 2011 Summer 2012 Summer 2013 Summer 2014 Fall Fall 2010 Fall 2011 Fall 2012 Fall 2013 Fall 2014 Spring Spring 2010 Spring 2011 Spring 2012 Spring 2013 Spring 2014 Summer Summer 2010 Summer 2011 Summer 2012 Summer 2013 Summer 2014 Fall Fall 2010 Fall 2011 Fall 2012 Fall 2013 Fall 2014 Spring Spring 2010 Spring 2011 Spring 2012 Spring 2013 Spring 2014 Total Other Direct Costs $41,982 $38,218 $34,003 Total All Direct Costs $152,658 $118,894 $114,679 select 1/4-time/1/2-time 1/2-time >> NON-Engineering Students Only Year 2 Year 3 Year 4 Year 5 PhD Students (enter no. of students per term) Masters Students (enter no. of students per term) Year 1 1 1 1 1 1 1 1 1 1 Engineering Students Only 8 Year 2 Year 3 Year 4 Year 5 Masters Students (enter no. of students per term) Year 1 PhD Students (enter no. of students per term) Year 1 9 other 10 other Year 2 Year 3 Year 4 Year 5 Year 1 Year 2 Year 3 Year 4 Year 5 Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Replace "Subcontract #" with the name of the proposed subcontract recipient. Scroll to the Right to enter Cost Sharing amounts. Worksheet for Project Budget - Subcontracts For each subcontract, you will need to submit the following with the GoldSheet: 1. Transmittal letter from the Sponsored Research Office: http://www.ospa.iastate.edu/proposal/docs/TransmittalLetter.doc 2. Statement of Work 3. Separate subcontractor's budget 4. Budget Justification If you have questions regarding subcontracts, please contact Tammy Polaski, 515-294-5225. Year 1 Funds Requested Subcontract 1 - Direct Costs Subcontract 1 - Indirect Costs Subcontract 2 - Direct Costs Subcontract 2 - Indirect Costs Subcontract 3 - Direct Costs Subcontract 3 - Indirect Costs Subcontract 4 - Direct Costs Subcontract 4 - Indirect Costs Subcontract 5 - Direct Costs Subcontract 5 - Indirect Costs Subcontract 6 - Direct Costs Subcontract 6 - Indirect Costs Subcontract 7 - Direct Costs Subcontract 7 - Indirect Costs Subcontract 8 - Direct Costs Subcontract 8 - Indirect Costs Subcontract 9 - Direct Costs Subcontract 9 - Indirect Costs Subcontract 10 - Direct Costs Subcontract 10 - Indirect Costs Total All Direct Costs Total All Indirect Costs Total All Subcontract Costs Year 2 Funds Requested Year 3 Funds Requested Year 4 Funds Requested Year 5 Funds Requested Year 1 Year 2 Year 3 Year 4 Year 5 Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Cost-Sharing / Matching Funds Worksheet for Project Budget - Cumulative Budget A Senior/Key Personnel B Other Personnel Total Number other Personnel Year 1 Year 1 Year 2 Year 2 Year 3 Year 3 Year 4 Year 4 Year 5 Year 5 Funds Requested Cost-Sharing / Matching Funds Funds Requested Cost-Sharing / Matching Funds Funds Requested Cost-Sharing / Matching Funds Funds Requested Cost-Sharing / Matching Funds Funds Requested Cost-Sharing / Matching Funds $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $77,676 $0 $77,676 $0 $77,676 $0 $0 $0 $0 $0 2.00 2.00 2.00 0.00 Total Total Total Funds Requested Cost-Sharing / Matching Funds Cost of Project (all sources) $0 $0 $0 $233,028 $0 $233,028 0.00 Total Salary, Wages and Fringe Benefits $77,676 $0 $77,676 $0 $77,676 $0 $0 $0 $0 $0 $233,028 $0 $233,028 C Equipment $30,000 $0 $0 $0 $0 $0 $0 $0 $0 $0 $30,000 $0 $30,000 D Travel $3,000 $0 $3,000 $0 $3,000 $0 $0 $0 $0 $0 $9,000 $0 $9,000 Domestic $1,000 $0 $1,000 $0 $1,000 $0 $0 $0 $0 $0 $3,000 $0 $3,000 Foreign $2,000 $0 $2,000 $0 $2,000 $0 $0 $0 $0 $0 $6,000 $0 $6,000 E Participant/Trainee Support Costs $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 1 Tuition/Fees/Health Insurance $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 2 Stipends $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 3 Travel $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 4 Subsistence $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 5 Other $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 6 Number of Participants/Trainees F Other Direct Costs $41,982 $0 $38,218 $0 $34,003 $0 $0 $0 $0 $0 $114,203 $0 $114,203 1 Materials and Supplies $20,000 $0 $20,600 $0 $21,218 $0 $0 $0 $0 $0 $61,818 $0 $61,818 2 Publication Costs $1,500 $0 $1,545 $0 $1,591 $0 $0 $0 $0 $0 $4,636 $0 $4,636 3 Consultant Services $10,000 $0 $5,000 $0 $0 $0 $0 $0 $0 $0 $15,000 $0 $15,000 4 ADP/Computer Services $1,000 $0 $1,030 $0 $1,061 $0 $0 $0 $0 $0 $3,091 $0 $3,091 5 Subawards/Consortium/Contractual Costs $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 6 Equipment or Facility Rental/User Fees $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 7 Alterations and Renovations $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 8 Graduate Student Tuition $9,482 $0 $10,043 $0 $10,133 $0 $0 $0 $0 $0 $29,658 $0 $29,658 9 other $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 10 other $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $0 $152,658 $0 $118,894 $0 $114,679 $0 $0 $0 $0 $0 $386,231 $0 $386,231 $38,165 $0 $29,723 $0 $28,670 $0 $0 $0 $0 $0 $96,558 $0 $96,558 $190,823 $0 $148,617 $0 $143,349 $0 $0 $0 $0 $0 $482,789 $0 $482,789 Percent Requested Percent CostShared 100.00% 0.00% G Direct Costs H Indirect Costs I Total Direct and Indirect Costs J Fee 0.00 Rate 25.00% Base Amount > > If this is an NIH Modular application, this is your modular amount each year (must be in multiple of $25,000) >> Salary Fringe $ 152,658 0.00 $ - 0.00 $ 118,894 0.00 $ - 0.00 $ 114,679 0.00 $ - 0.00 $ - 0.00 $ - 0.00 $ - 0.00 $ - $152,658 $118,894 $114,679 $0 $0 $386,231 $66,000 $11,676 $66,000 $11,676 $66,000 $11,676 $0 $0 $0 $0 $198,000 $35,028 100.00%