intro to microbiology updated

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Introduction to microbiology

PSP1

virus

virus

• Smallest known infective agent

• Most forms of life a susceptible to viral infectionhumans, animals, plants, bacteria

• Need a host to replicate

• Requires entry to the host

– Respiratory tract

– Alimentary tract ( oral –faecal route)

Blood

– Sexual intercourse

Skin abrasions

• Basically :

• a core of nucleic acid ( contains genetic material DNA/RNA) surrounded by a protein coat

• Outer protein envelope

replication

• Often protein envelope partially derived from the host cell

• Virus always replicate INSIDE a host cell

• Fragile outside a host cell

1. Cause cell lysis- viral DNA replicated

2. Remain latent within the cell , divide with the cells natural division , virus DNA is replicated during this division

1. THEN cause lysis

• Different virus attack different cells depending on the RECEPTOR SITE

• Systemic - spreads widely and infects many tissues and organs e.g. measles

• Localised - invades only tissues adjacent to the site of entry e.g respiratory viral infections/ verrucae

• Main defence of the body is to produce the protein interferon

• Interferon is released by infected cells and taken up by other cells

• Antibodies appear in the patient's serum- this leads to immunity or resistance

Hepatitis

• Hepatitis A, Hepatitis B, and Hepatitis C are diseases caused by three different viruses

• different modes of transmission and can affect the liver differently.

Hep A- ingesting faecal matter ( often associated with developing countries/travel)

– Hep B- blood/body fluid

– Hep C- blood/body fluid

• There are vaccines to prevent Hepatitis A and B; however, there is not one for Hepatitis C.

HIV

• Human immunodeficiency virus

• AIDS- final stage of HIV infection

• 1 in 5 affected people do not know they have the virus

• Transmitted through:

– Unprotected sex

– Mother-baby

– Contaminated needles

bacteria

• Single cell organisms

• Classified in different ways ( three parameters):

• Shape- morphology

• Colour ( Gram staining)

• Growth requirements-Need for oxygen

naming

• Bacteria are named with 2 words ( genus + species)

• Staphylococcus aureus shortened to S.aureus

morphology

• Sphere ( cocci)

– Staphylococcus – spheres bunch together

– Streptococci- spheres form a chain

• Rods ( bacilli)

• Spiral (spirochaetes)

Gram staining

• Gram positive and gram negative refers to how a bacteria reacts to a gram stain.

• Chrystal violet then iodine

• If it takes the initial stain, it will be purple and be considered gram positive.

• If it doesn't take the initial stain, it will be pink and gram negative .

Positive and negative

• The difference is the outer casing of the bacteria.

• A gram positive bacteria will have a thicker layer of peptidoglycan (a sugar-protein shell)

• A gram negative bacteria has an outer membrane covering a thin layer of peptidoglycan on the outside.

Growth requirements

• Aerobes need oxygen and are found on wound surfaces

– E.g. Pseudomona aeruginosa

• Anaerobes cannot survive where there is oxygen and are found deep in wounds

– E.g. Clostridium welchii – causes gas gangrene

Cultured on an agar plate

Staphylococcus aureus

• Gram positive

• Staphylococcus aureus is a bacterium that commonly colonises human skin and mucosa

(e.g. inside the nose) without causing any problems.

Normal body flora

• Common wound infector- may lead to cellulitis

• Methicillin Resistant Staphylococcus aureus

Pseudemonas aeruginosa

Common wound pathogen

Gram negative

Pyocyanin – green pigment secreted by the bacteria

One of the most worrisome characteristics of P. aeruginosa is its low susceptibility to antibiotics

Streptococcus pyogenes

( group A strep)

• Gram positive

• Faculative anerobe ( can survive with or without oxygen)

• Part of normal flora in many people’s throats

• Can cause simple infections ( sore throat) to life threatening infections

• Most frequent pathogen in humans

Streptococcus pyogenes

• Strep throat

• Purulent infections

• cellulitis

• impetigo

• necrotising fasciitis ( flesh eating)

• Can lead to toxic shock

group G Strep

• MAY be found as part of normal skin flora

• Normally infections in patients with other comorbidities e.g

diabetes

• Wound infector

• Can spread and cause extensive infections: e.g.

• Bacteriamia

• Septic shock

f

FUNGI

Fungal hyphae

Multicellular fungi are composed of filaments called ‘hyphae’

• More complex organism than bacteria

• Reproduce by spore formation ( released by splitting hyphae) or sexual reproduction ( mix chromosomes)

• Cell wall+ cell membrane

• Ergesterol essential element of the cell membrane – provides stability and flexibility

fungi on skin and nails

DERMATOPHYTES infect keratinous material

NON-DERMATOPHYTES

Yeasts or moulds

Fungi cannot manufacture their own food.

Dermatophytes ingest keratin as their food source

dermatophytes affecting the skin and nails

• 3 genera

– Trichophyton

– Epidermophyton

– Microsporum

• all endemic to communal areas

Pathology

First result

Potassium hydroxide wet mount – dissolves

Keratin leaving resistant Fungal hyphaeseen through microscope

Second result

Fungal culture- agar plate

Therefore 2 weeks for results to be returned from the pathology laboratory

Tricophyton rubrum

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