GENETICS Chapter 7 WHAT WE THOUGHT BEFORE MENDEL? Aristotle (sometime in the 400’s) Thought we were composed of “vapors” & “fluids” “Fluids”- male ejaculate “purified blood” b/c it wasn’t red This first led to the thought that heredity was related to blood “Vapors”- female “invisible particles” During intercourse these, fluids and vapors combine, thus creating offspring similar to parents. WE CAN SEE EVERYTHING WITH MICROSCOPES Theory of Preformation (1600-1700)- Thought they could see “little people” in sperm when viewed under a microscope. EPIGENETICS Schools in 1800’s taught acquired characteristics- that you can alter yourself to affect your offspring. Ex: playing music, building muscles, smarts We now call this Epigenetics or changes in gene expression by mechanisms other than changes in DNA. EPIGENETICS CONTINUED… It was first rejected but now recent evidence has shown might have been right all along. This idea was discovered in mice by the work of Randy Jirtle He discovered that what a mother mouse ate during pregnancy can have a effect on gene expression in the next generation of mice. This food was high in methyl groups, a substance that can turn on and off gene expression. THOSE POOR RATS August Weismann(1883)- experiment on rats by cutting off their tails Rats with cut tails produced rats with tails (~20x) Cast doubt on Aristotle’s theory Also proposed the idea of Somatic and Germ tissue. GREGOR MENDEL (1822-1884) THE Father of Genetics Worked on Pea Plants (Pisum sativum) In 1866, his papers were 1st published but weren’t found until the 1900’s. WHY PEA PLANTS? 1. They reproduced quick and with a large amount of offspring 2. They contained a wide variety of variation (to which he studied and composed 7 traits) 3. Both male and female parts were on one flower 4. Very convenient to work with. 3 STEPS THAT LED TO HIS DISCOVERY 1. Had plants self-pollinate until he was sure that it was a true-bred trait. 2. He then mated the two opposite traits via crosspollination. 3. Called this the Parental(P) Generation Called this the Filial (F1) Generation He let those offspring then self-pollinate. F2 Generation. Counted the number of each trait that was produced. TERMS AND HOW THEY RELATE TO GENETICS Gene- a segment of DNA that transmits information from parent to offspring. Allele- Alternative forms of a gene for a trait. Ex: T, t Dominant- An allele that has a higher potency. MORE TERMS Recessive- a copy of an allele that is not readily expressed unless it contains another recessive allele. Homozygote- 2 alleles are similar. Purebred. Heterozygote- alleles are different. Hybrid/mutt. Ex: Rr Phenotype- Physical expression of a gene. Ex: RR, rr Ex: Tall, short Genotype- Actual genetic construction. Ex: AA, aa, Aa MENDEL’S GENETIC LAWS 1. Law of Dominance 2. Law of Segregation 3. Law of Independent Assortment LAW OF DOMINANCE Only the dominant allele in a heterozygote is expressed. Dominant is always put first and capitalized when written out. Ex: SS= Smooth Ss= Smooth ss= Wrinkled LAW OF SEGREGATION 2 alleles of a parent separate during Sexual Reproduction and only one is randomly chosen to be passed to offspring. Mendel created this law by saying that his “factors” split during meiosis. Walter Sutton- found that chromosomes also split during meiosis and that Mendel’s “factors” were on these chromosomes. We call this the chromosomal theory of inheritance. T tt TT T t Tt Tt t Tt Tt HOW SEGREGATION RELATES BACK TO MEIOSIS Genes Chromosomes Parental: RR rr Parental Only R Gametes: Generation 1: only r Rr LAW OF INDEPENDENT ASSORTMENT The segregation of 1 pair of alleles occurs independently of the segregation of any other pair. We inherit one and then the other. USING PROBABILITY AND RATIOS Mendel was a mathematician so he used math to predict genetic outcomes. Probability uses rules that can predict how genes will be distributed among the offspring of two parents. Probability = # of one outcome # of total outcomes Ex: Rolling dice or Flipping a coin. MONOHYBRID CROSS AND PUNNETT SQUARES Only using one trait and determining the outcome. DIHYBRID CROSS AND LAW OF IA Using two pairs of contrasting traits. PUNNETT SQUARE PROBLEMS HOW MANY DIFFERENT GAMETES? When given Allele combinations, we can use math to figure out how many possible gametes could be produced. We know that there are only 2 possibilities that the gamete can have for one trait. Its either going to have a Dominant or a Recessive Allele Ex: AA 1 Aa 2 aa 1 HOW MANY DIFFERENT GAMETES CAN YOU HAVE OUT OF THE FOLLOWING COMBINATIONS? AABb 1 x 2 = 2 possible different gametes (AB or Ab) CcDdEe 2 x 2 x 2 = 8 possible different gametes (CDE, CDe, CdE, Cde, cDE, cDe, cdE, cde) ffGgHhIiJJ 1x2x2x2x1 = 8 possible different gametes (fGHIJ, fGHiJ, fGhiJ, fGhIJ, fgHIJ, fgHiJ, fghIJ, fghiJ) ONE LAST PROBLEM. AaBbCCDDeeFFGGhhIIjjKkLlMmNNooPP 2x 2 x1 x1 x1 x1 x1 x1x1x1x2x2 x2 x1 x1 x1 = ? =32 possible different gametes Now Imagine how our genes work and in each gamete we have 23,000 different genes. That would be 2^23,000 = error That is a whole lot of different gametes. HOW MANY PHENOTYPES/GENOTYPES? The secret to this is the mastery of the F.O.I.L. First, Outside, Inside, Last For example: lets look at a monohybrid cross Aa x Aa (A a)x(A a) Four pairs of alleles: AA, Aa, Aa, aa HOW MANY PHENOTYPES/GENOTYPES How many Phenotypes are possible in the following Combination? Aabb x AaBb Aa x Aa bb x Bb AA, Aa, Aa, aa Bb, bb, Bb, bb 2 x 2= 4 phenotypes Genotypes? Aa x Aa bb x Bb AA, Aa, Aa, aa Bb, bb, Bb, bb 3 x 2 =6 RATIO PROBLEMS AND QUIZ The handout for today contains the ratio problems. They will be due on Also, a quiz over the previous material and the 4 exceptions to Mendel on: FRIDAY EXCEPTIONS TO MENDEL 1. Multiple Alleles 2. Incomplete Dominance 3. Co-dominance 4. Lethality MULTIPLE ALLELES More than 2 alleles exist for some gene Means more phenotypes and genotypes to deal with. Ex: Coat color in rabbits C+- agouti Cch- chinchilla Ch- Himalayan C- albino C+ > Cch > Ch > C INCOMPLETE DOMINANCE Heterozygote has a phenotype intermediate to the two homozygote types. Ex: Snapdragon color RR= Red Rr= Pink rr= White Phenotype ratio is similar to genotype 1:2:1 CO-DOMINANCE Both alleles of a Heterozygote are expressed Ex: Blood Types IA – A Antigen Antigen- Proteins that mark you as being you. Phenotypes A B AB O IB- B Antigen Genotypes IAIA, IAi IBIB, IBi IAIB ii i= no Antigen LETHALITY Some offspring have a reduce chance to live because of their gamete. Ex: Corn G- Green color- produces chlorophyll g- Yellow Color- no chlorophyll GG and Gg- Green= live gg= Yellow = die b/c no chlorophyll Genotype ratio- 1:2 ROLE OF THE X AND Y CHROMOSOMES Females – XX Males – XY Sperm determines sex Only true of Fruit flies and Humans Region on Y chromosome that determines sex= SRY Heterogametic Sex- can make two dif. Gametes Homogametic Sex- can only make one Gamete OTHER SEX ARE DETERMINED DIFFERENTLY Fish, bird, reptiles Homogametic- Males Heterogametic- Females Bees and other select insects They don’t have sex chromosomes but rather male or female determined by polyploidy. Males- n Females- 2n Marine worm Females release pheromones No adult females- females adult females- males SEX- LINKED GENES First studied by Thomas Morgan Hunt Used Red and white eyed Fruit flies P: red females and white males F1: Red females and males F2: Red females and males and White males Sex-linked because the gene is located on X chromosome SEX- LINKED Female WW- Red Ww- Red ww – White Male WY- Red wY- White Hemizygous- only one allele of a gene is present. WHY DO WE USE FRUIT FLIES FOR GENETICS? Long time between generations for humans Humans produce small # of offspring/ generation Fruit flies produce ~ 100-200 Humans have a large # of chromosomes About 2 weeks from generation to next for fruit flies. Fruit flies have 8 Ethical problems when messing with humans No one cares that much about flies. GENETIC DISORDERS 1. Sex-linked 2. Sex-Modified 3. Chromosomal 4. Sex Chromosome 5. Recessive disorders 6. Dominant disorders SEX-LINKED Gene expressed usually in one sex 1. Hemophilia – failure of blood to clot 2. Deuteronopia (color blindness) 3. Beards/ Mustache and Breast development 4. Muscular Dystrophy – wasting away muscles SEX- MODIFIED Exhibits a reversal of Dominance between Sexes Ex: Pattern Baldness B1- Dominant Male: No hair B2- Recessive Male: Hair B1- Recessive Female: No hair B2- Dominant Female: hair CHROMOSOMAL DISORDERS Trisomic 13- Patau Syndrome – die w/in 6 months Trisomic 18- Edwards Syndrome- die w/in 6 months rare rare Trisomic 21- Downs Syndrome- will survive but with a less than normal lifespan. 1/900 Scan chart here. SEX CHROMOSOME Triple X (XXX)– Normal intelligence and are fertile. Turner Syndrome (XO) – Short, sterile, undeveloped 2ndary sex characteristics. Klinefelter Syndrome (XXY) – Long limbs, sterile, breast development, underdeveloped genitalia. Extra Y Syndrome (XYY) - increased risk of antisocial behavior, fertile. RECESSIVE DISORDERS Cystic Fibrosis- mucus clogs lungs, liver, and pancreas. Don’t survive adulthood. Sickle cell anemia- Poor blood circulation. Tay- Sachs- Deterioration of central nervous system in infancy and don’t last to adulthood. Phenyl- Ketonuria- Failure of brain to develop in infancy, if untreated they don’t survive to adulthood. DOMINANT DISORDERS Huntington’s Disease- Gradual deterioration of brain tissue in middle age, shortened life expectancy. TECHNIQUES FOR DETECTING GENETIC DISORDERS Pedigrees Family history of a disorder Genetic Counseling PEDIGREES: 3 STEPS ON HOW TO READ THEM 1. Sex-Linked? 2. Dominant or Recessive? 3. Usually seen only in males because they have 1 X If Autosomal should be = distribution between sexes Dom- every offspring that has it should have parent Rec- parent is a hetero, normal but a carrier Single gene or several? If 1 gene, parent: offspring ratio should be 3:1 (25%) If multiple, ratio and percentage should be lower GENETIC COUNSELING Helps families understand the risk of passing the disorder on by analyzing pedigrees. Can also see genetic makeup of embryo by using prenatal testing through karotyping. Amniocentesis- withdraw fluid @ week 16 to check enzyme activities. Chorionic villus sampling- part of placenta is tested early in pregnancy. Ultrasound- detect size, position, sex, organ health Fetoscopy- direct view of fetus Gene Replacement- new technique for replacing bad genes for good genes.