bacterial identification methods

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BACTERIAL

IDENTIFICATION

METHODS

C

ONTENT

Purification of cultures

Morphological and pure culture studies

Biochemical tests

P

URIFICATION OF CULTURES

Reason to purify cultures.

To characterize an individual species.

To study the morphology and physiology of individual bacterial species

To study their biochemical behavior and response.

To purify, pure cultures techniques can be used.Method:

Streak plate method

Pour plate method

Spread plate method

I

MPORTANT PROCEDURE

!!

Need to have a control procedure to avoid contamination .

Specimen collection

Preparation of media

Microbiological tecniques

Staining and reagents

Equipment used.

S

PECIMEN

C

OLLECTION

 Applied the sterile techniques

 Use correct media for transportation and stock.

 The transport media used to preserve and ensure the viability of bacteria during the transportation period

 Important! Label your specimen.

 Crucial for cerebrospinal fluid, blood culture and fecal specimens, etc.

6

U

SING STERILE

TECHNIQUES

 Bacteria are everywhere

 Media used for bacteria growth  welcoming for many bacteria

 We only want specific ones to grow  Sterile techniques

 Sterile remain sterile as long as doesn’t touch anything that isn’t sterile

 Also avoid prolonged exposure to air

7

A

SEPTIC

T

ECHNIQUE

:

These are various techniques that are used to minimize the introduction of microorganisms into media especially during transfer processes, such as :

 pouring of media into Petri dishes inoculation of cultures

These techniques include:

 cleaning the bench top work areas with disinfectant solution

 washing hands before starting work other specific techniques that will be demonstrated in the lab.

8

S

TERILE TECHNIQUES

:

WHAT CAN

YOU DO IN THE LAB

?

Wash your hands

Keep your bench clean

Wear gloves

Flame loop, neck of tube

Keep cap facing down

Work quickly and efficiently

Limit talking when opening cultures

P

REPARATION OF MEDIA

The media should be packed well to prevent from leakage and breaks , protected from moisture and sunlight and excessive heat

The expiry date should be noted and the instruction of storage should be followed

The mix bacterial colonies should be sub cultured until the culture are purified the bacterial colony characteristic should only derive from a single colony

10

Plate

C

ULTURE MEDIA

Broth

Slant Deep

M

ORPHOLOGICAL AND PURE CULTURE

STUDIES

Morphological studies:

- Sizes, shapes, cell arrangement, cell wall, surface adherents or appendages,flagella,pili,endospores,ribosomes.

- Macroscopic examintation

Techniques used in the study:

- Microscopic examintion

- Staining techniques

M

ORPHOLOGICAL AND PURE

CULTURE STUDIES

I

SOLATION OF

P

URE

B

ACTERIAL CULTURES

Divide into 3 groups:

Selective media

Differental media

Enrichment media

S

ELECTIVE MEDIA

 Prepared by the addition of specific subtances to a culture medium that will permit growth of one bacteria while inhibiting the growth of others.

 Contain antimicrobial agents such as crytal violet,bile salts,sodium azide,antibiotic and e.t.c.

Salmonella-Shigella Agar- media contain bile salts

(inhibits many coliform bacteria).Produce colorless colonies (unable to ferment lactose)

Mannitol Salt Agar -Isolation of Staphylococci.

Bismuth Sulfite Agar-Isolation for Salmonella typhi .Reduces the sulfite to sulfide results in black colonies and with metallic sheen .

D

IFFERENTIAL MEDIA

 The incorporation of certain chemicals into a medium may result in diagnostically useful growth or visible change in the medium after incubation.

Eosin Methylene Blue(EMB)Differentiate between lactse and non-lactose fermenters .

Mac Conkey Agar-contain crystal violet and bile salts.Use for selection of Enterobacteriaceae and related gram negative rods.

Hektoen Enteric Agar-High concenration of bile salts.Inhibit Gram positive bacteria and retards the growth of many coliform strains.

I

N

M

AC

C

ONKEY AGAR

I

N

M

AC

C

ONKEY AGAR

E

NRICHMENT MEDIA

 These are routinely employed in a laboratory e.g. nutrient broth, nutrient agar, infusion broth,blood agar.

 They support the growth of fastidious bacteria.

I

N NUTRIENT AGAR

P

URE COLONY

I

N

B

LOOD AGAR

H

EMOLYSIS

 Destruction of erythrocytes nd hemoglobin in medium.

 Can be divided into 3 categories:alpha hemolysis, beta hemolysis and gamma hemolysis

Alpha hemolysis-greenish to brownish discolouration around the colonies. ( Streptococous gordonii,Streptococcus pneumoniae)

Beta hemolysis-complete lysis of blood cell resulting in clearing effect around the growth of colony.( S.aureus

)

Gamma hemolysis-no change in the medium.( Enterococcus faecalis)

B

IOCHEMICAL TESTS

Catalase test

Oxidase test

Coagulase test

Sugar fermentation test

MRVP test

Indole test

Citrate test

Motility test

H

2

S test

Litmus milk test

C

ATALASE TEST

 Produce bubble just after attaching the bacteria to the reagent

 To differentiate staphylococci and streptococci

O

XIDASE TEST

 Have 2 methods:Filter paper/Sterile swab

 To help identify Vibrio, Neisseria, Pasteurella and

Pseudomonas sp.

 Oxidase enzymes oxydize phenylenediamine .

 Deep purple colour on reagent paper

O

XIDASE TEST

 To identify S.aureus

 The enzyme coagulase clots plasma

 Tube : fibrin clot

 Slide: clumping of bacterial cells

C

OAGULASE TEST

S

UGAR FERMENTATION TEST

 Glucose test

 Maltose test

 Sucrose test

 Lactose test

 Some will appear with gas production

V

OGES

-P

ROSKAUER TEST

 To differentiate enterobacteria

 Organism ferments glucose with acetoin production.

Acetoin is oxidised to diacetyl which reacts with creatine.

 Brick red colour develop slowly

 Eg: E.coli (-)

 Klebsiella sp. (+)

M

ETHYL

R

ED TEST

 To differentiate

Enterobacteria.

 Detect the production of sufficient acid during fermentation of glucose in buffered medium to give a colour change of indicator

 Brick red medium

I

NDOLE TEST

 Using Kovac reagent .

 To differentiate Gram negative rods, especially E.coli .

 Demonstrates the ability of certain bacteria to decompose amino acid tryptophan to indole which accumulates in the medium.

 Reddening of strip or medium

I

NDOLE TEST USING OTHER

REAGENT

C

ITRATE TEST

 Test the ability of organism to utilise citrate as a sole carbon source and ammonium salt for nitrogen.Result in alkalinization in the medium with colour change indicator.

 Use Koser’s liquid citrate medium.

 Differentiate Enterobacteria from other bacteria.

 Positive result : Blue and turbid medium

M

OTILITY TEST

LITMUS TEST

 Medium consisting of LACTOSE,CASEIN and the pH indicator azolitmin.

 It is used to differentiate members within the genus Clostridium . It differentiates Enterobacteriaceae from other Gram-negative bacilli based on enterics' ability to reduce litmus.

 The skim milk provides nutients for growth. The protein is casein and the lactose is for fermentation.

 Azolitmin is purple between pH of 4.6 and 8.2. It turns pink when pH reaches 4.5 and blue at a pH of 8.3.

 Because of this, litmus milk can give quite unreliable results .

Thus, you would be advised to use litmus milk as a confirmatory test but not a definitive test (except as a last resort).

T

RIPLE SUGAR ION

 Triple Sugar Iron medium is a differential medium that can distinguish between a number of Gram-negative enteric bacteria based on their physiological ability (or lack thereof) to:

 a. metabolize lactose and/or sucrose b. conduct fermentation to produce acid c. produce gas during fermentation d. generate H

2

S.

T

ERMS FOR TODAY

 Culture collection centre.

ATCC American type culture Collection Centre

NCTCC National Collection of Type Culture

NCIM Natonal Collection of Industrial and Marine Bacterial

NCDO National Collection of Dairy Organism

T

HE END

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