Attributes of Life (Chapter 19) Introduction to life Themes/Characteristics of all living organisms Cardinal structural and functional “nuts and bolts” of all life Introduction What defines life? Some exceptions Irritability (particularly after a test!) Grows spontaneously (as in first year of college and old age) Reproduce Ice grows Mule (donkey x horse) but does not reproduce Defining life Multiple definitions all with multiple perspectives Best to focus on what are themes or general features What is Life? Chapter 23 Introduction to life Themes/Characteristics of all living organisms Cardinal structural and functional “nuts and bolts” of all life Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is the cell, stupid” Continuity of life based on information: “it is your genes, stupid” (not jeans) Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Take-Home Messages - Themes Hierarchical nature of the living world Emergent properties of living systems Cell as a basic unit of structure and function Continuity of life based on information Openness of biological systems Regulatory capacity of living systems: homeostasis Capacity to reproduce Capacity to utilize energy Two sides of the same coin: diversity and similarity of living systems Evolution as the cornerstone of biology and living systems (explains diversity and similarity) Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is your cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Hierarchical Nature of Living Systems Community Population Organism Organ Tissue Cell Organelles Macromolecules Atoms Emergent Properties of Living Systems Consequence of hierarchy theory: emergent properties With each step up in the hierarchy, novel properties emerge that were not present at lower levels and were not predictable Example: cell composed of trillions of macromolecules arranged in very precise ways that result in highly ordered and complex machinery (sum far greater than the parts) Infrastructure of A Cell Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Structure correlated with function Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Cell: Structure and Function Organism’s basic unit of structure and function Lowest level of structure capable of performing life’s activities Most common basic structure of all living organisms Robert Hooke (1665) and Anton van Leewenhook Cell Theory Ubiquitous nature of cells All cells come from previous cells Hooke’s Cell (Cork) General Cell Structures Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Continuity of Life and Information Order in any system originates from information and instructions that serve as a template for organizing “parts” In living systems, instructions are encoded/inherited in the DNA Inheritance is based on the precise order of nucleotides (ATCG) Example: RAT versus TAR versus ART Continuity of life is based on information that is: Transferred from generation to generation over time Preserved/stores at the molecular level in DNA Infrastructure of A Cell Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Diversity and similarity of living systems Evolution of living systems Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Diversity and similarity of living systems Evolution of living systems Open Systems All living organisms are open systems, allowing organisms to interact with their environment Processing stimuli from the environment Responding to stimuli in the environment Characterize an “open” versus a “closed” system Examples Orientation of leaves to sun Eyes Ears Microbes and single cell organisms (e.g., amoeba) The structure of the eye Figure 26.41 26-580 Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Regulatory Systems Constant interplay of organisms with the environment requires a well balanced regulatory system Consequence is homeostasis Set point, effectors, control centers and sensors Analogy to thermostat for heat control Examples Enzymes in cells (lab exercise next week) Thermostatic control of body temperature Regulatory Systems: Cybernetics Positive Feedback Set Point Control Center/ Sensor Effector Negative Feedback Feedbacks (+ and -), homeostasis and cybernetics Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Universality of Reproduction Reproduction: regenerative process of making new organisms from previously existing organisms (not necessarily copies) Methods Sexual Asexual (microbes; cell division/mitosis) Ancillary but important function: creating new variants Example: siblings Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Energy Utilization Why is energy use an important theme? Energy transduction Thermodynamics (1st and 2nd laws) Energy source is ________ Energy capture Energy storage Autotrophs (energy from sun “directly” via phoptosynthesis) Heterotrophs (energy from other organisms) Chemical bonds (C-C bonds, which are _____ bonds) ATP (adenosine triphosphate and ADP (adenosine diphosphate) Energy dissipation 2nd Law of Thermodynamicvs Energy Flow ADP Catabolism Biosynthesis ATP Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution of living systems Two Sides of a Coin: Diversity and Similarity Diversity is a hallmark of living systems 1.5 M known species of plants, animals and microbes 100 M+ thought to exist Similarity is a hallmark of living systems Striking similarity at the molecular level (DNA) so you are more akin to worms, squirrels, birds and pigs (~90%!) than you think Examples Biochemistry Structure and morphology DNA Conclusion: two sides of the same coin Themes/Characteristics Hierarchy theory and emergent properties Structure and function: “it is cells, stupid” Continuity of life based on information: “it is your genes, stupid” Openness of biological systems Regulatory capacity of living systems Capacity to reproduce Capacity to utilize energy Diversity and similarity of living systems Evolution and adaptation of living systems Evolution and Adaptation Define “evolution” Define “adaptation” Why is “evolution” and “adaptation” important in living systems Examples of evolution Macroscale: origin of species Microscale: Microbes resistant to antibiotics Moths resistant to air pollution Examples of adaptation Articulation of the joints in animals Planar structure of leaves Evolution and Adaptation Cornerstone theory of biology (relate to hypothesis) Explains diversity of life Explains similarity of life Theories in biology are difficult to have stood the test of time and even more difficult to address very divergent features of living systems Evolution is one of the long-standing theories that has the fascinating and unusual feature of explaining not only the diversity of life but at the same time the striking similarity among all living organisms Charles Darwin (1859): Origin of Species Take-Home Messages - Themes Hierarchical nature of the living world Emergent properties of living systems Cell as a basic unit of structure and function Continuity of life based on information Openness of biological systems Regulatory capacity of living systems: homeostasis Capacity to reproduce Capacity to utilize energy Two sides of the same coin: diversity and similarity of living systems Evolution as the cornerstone of biology (explains diversity and similarity)