Great Basin College, Pahrump Valley Campus, 551 East Calvada Blvd, Pahrump, Nevada – 89048 - Phone: (775) 727-2000 -Fax: (775) 727-2014 Course Syllabus for BIOL 251– General Microbiology – Spring 2014 Instructor: Dr. Rita Bagwe Office: 101B Email: rita.bagwe@gbcnv.edu Phone: 775-727-2005 Office Hours: Monday thru Thursday 7:30 a.m. – 9:30 a.m.; Friday – 8:00 a.m. – 12:00 p.m. or by appointment. Teaching Assistants: Ms. Holly Brice - tahollyb@gmail.com : Mon & Tue: 9:00 – 11:00 a.m. Ms. JaniJohnston – janijohnston196@gmail.com ; Wed &Thur: 4:00 – 6:00p.m. Teaching assistants will meet strictly by scheduled appointment only. Sign-up sheet for scheduling appointment is kept in the Academic Success Center. Course title:General Microbiology Course number/ section numbers:BIOL 251 /1005 lab / 1006 lecture Number of credits:4 Credits Meeting dates/time/place: Tuesday & Thursday 11:00 a.m. to 12:15 p.m. & on Tuesdays 1:00 p.m. – 3.45 p.m. / Room number 116 Dates when classes will not be held: Classes will not be held on holidays listed in the school academic calendar. Prerequisite:Must have completed BIO 190. Corequisite:Concurrent enrollment in a corresponding lab section is required for this course. Course description:A laboratory and lecture course emphasizing taxonomy, morphology, physiology, infectious diseases, and ecology of microorganisms in addition to skills in aseptic procedures, isolation, and identification. Open to all life science majors and allied health majors. Texts:Microbiology, an Introduction. 11th edition. Publishers- Pearson, Benjamin Cummings Publishing Company Authors – Gerard.J.Tortora,Berdell.R. Funke, & Christine. L. Case. Published – January 2012. ISBN-13: 978-0-32173-360-3 EISBN-13: 978-0-32182-081-5 Lab Manual:Microbiology Laboratory Theory & Application, Brief (Second Edition) By Michael J. Leboffe, Burton E. Pierce, David Ferguson (Editor) Publishers -Morton Publishing Company Published - 2012 ISBN-13: 978-0-89582-947-4 / 9780895829474 Learning Outcomes and measurements: Objectives 1. Communication Skills Expected Learning Outcomes Upon completion of the course the student will be able to: Outcome Measurements The expected outcomes will be measured by: Students will have several opportunities to exercise written and oral communication skills throughout this course. They will complete laboratory reports and written assignments accessing scientific information as well as written exams. Oral communication skills will also be utilized during discussions involved in completing laboratory assignments. Lecture Exams: Students will be able to read and answer exam questions in written form. Lab Practical Exams: Students will read and answer exam questions in written form. Written Lab Report: Students will clearly communicate scientific information in written form. (See “lab reports” below for grading rubric). Class Discussion: Students will be able to communicate scientific ideas orally. (Ungraded) 2. Critical Thinking Quantitative Ability: Students will use mathematical principles and quantitative methods to complete the laboratory assignments. They will also learn how to quantitatively measure molecularbiological and cellular characteristics. Lab Exams (written and practical) Lab Notebook Quizzes Reasoning and Individual Thought: Students will use reasoning and independent thought to complete laboratory experiments and answer exam questions. Scientific Understanding- Students will comprehend molecular-biological and cellular systems and the process by which the scientific knowledge is discovered. They will develop the ability to understand molecular-biological and cellular information and how it relates to them. Lecture Exams 3. Personal and Cultural Awareness Sense of the Individual in SocietyStudents will gain an understanding of molecular and cellular biology and how this affects them and the population. Sense of the Past- Students will gain an understanding of how biological knowledge was discovered and how this knowledge has changed society and their lives. Sense of Accountability- Students will comprehend the consequences of human discoveries in molecular and cellular biology and their implications. Appreciation of Fine Arts- Students will develop an understanding of the value of biological diversity and individual curiosity and creative thought. Lecture Exams:Students will be able to answer exam questions on the importance and place microbiology in society, on the history of microbiological research, and how their actions affect them and their environment Lab Practical Exams: Students will be able to answer lab practical exam questions on the importance and place of microbiology in society, on the history of microbiological research, identification of microbes, Various tests to identify the microbes and how it affects them and their environment Class Discussions: Students will be able to discuss the importance or microbes and their role in our everyday life - ungraded Written Lab Report: Students will write a report on any one of the diseases listed 4. Personal Wellness Objective 5. Technological Understanding Students will develop skills in determining the consequences of their actions in relation to the environment and their personal health. They will gain knowledge needed to make important decisions involving personal health. Lecture Exams and Lab Practical Exams: Students will be able to answer exam questions on the molecular basis of human health. Students will gain knowledge of how advancing technology in the field of microbiology will affect their lives and their personal health. Lecture Exams: Students will be able to answer exam questions on technology in cell and molecular biology, and human health. Class Discussions: Students will discuss the molecular basis of human health, ungraded. Lab Practical Exams: Students will demonstrate the ability to use technological lab equipment used in biology and relate the use of this equipment to cell and molecular biology and human health. Written Lab Report: Students will present, in written form, the use of technology to discover knowledge in the area of cell and molecular biology – the “procedures” section of their lab reports. Summary of the Assessment of Objectives:Learning and general education objectives will be assessed with three distinct tools. Lecture exams will consist of multiple choice questions that will test three types of knowledge: recall of factual information; definitions of terminology; and conceptual and integrative thinking. Laboratory practical will emphasize recall of the various manipulative and study objects used in the exercises, as well as testing that the students understand the concepts and principles that were generated with these devices. The written laboratory report will assess their written communication skills, as well as their conceptual understanding of a critical lab experiment. This last experiment has been chosen for its mix of conceptual, numeric, and technical skills. Method of instruction:Each week there will be two lecture classes and one laboratory class. Homework assignments will be assigned every week. It is your responsibility to read the chapter before the class. Use of computers in this course:WebCampus: This course will make use of WebCampus. To log in, go to webcampus.gbcnv.edu. Your WebCampus ID is your Great Basin College email address ID. If you don't have a GBC email address or don't remember your address go to swami.scsr.nevada.edu or the Technology Help Desk helpdesk@gwmail.gbcnv.edu, or 7532167. Passwords will be sent by mail to students who register for their course(s) 5 days before the semester begins. If you register after this time or did not receive a letter by mail, contact the Help Desk as soon as possible. Grading system:The grade for this course will be based on two components: performance in lecture and laboratory. The total score for the course is 800. 400 Points- Lecture Grade based on 4 one hour exams (100 points each) 100 Points- 10 Lecture or Lab quizzes worth 10 points each 50 Points- 10 Homework assignments worth 5 points each 25 Points- Class Presentation. **See below for further information** 100 Points- 2 Lab Practical Exams 50 points each 80 Points- 4 Reports worth 25 points each that includes 3 lab reports and 1disease report. 15 Points- Lab notebook submittal 10 Points- Personal proficiency in the laboratory Lab Reports:The use of color pencils is mandatory for all students. All the experiments should have an aim, materials used, procedure, principal, results, conclusion and graphs, figures, tables, flow charts wherever necessary. The disease report should include discussion in details of any one microorganism or disease that is included in the textbook. The report(s) must be typed, single spaced, 12 point font, times new roman. It is due by the next lab class period (1 week) after being assigned. The report should follow the following outline: Aim: Title of the experiment Introduction: Give the background to the topic. Why is it important? Briefly tell what you are going to do in the experiment. Procedures: Explain what organisms, materials and methods were used in the experiments. How did you do it? Results: Present the results. Point out key or unexpected results. Conclusion: What was the significance of your results? Explain the importance of the experiment, and whether or not your outcome was consistent or inconsistent with what was expected. Reference: Citing material used in writing of lab report Diagram / Figure/ Tables/ Calculations/ Graphs: Wherever necessary. Clear, legible and labeled. Grading criteria for the report are identical to those used by the English department: 1. Focuses and develops ideas effectively, showing creativity and insight. 2. Organizes ideas in a purposeful and logical manner, moving the reader (listener) smoothly through the text (subject). 3. Uses sentence structure and word choice effectively with a sense of control. 4. Commits few, if any, errors in grammar/usage and mechanics. Lab Notebook:A lab notebook has to been maintained by everyone and it will be graded during lab exams. The use of color pencils is mandatory. A plain notebook should be used as lab notebook and should include certificate page and index page. All lab exercise questions should be answered and written legibly. The use of neat, well labeled graphs/diagrams should be included when necessary. Attendance in lab is mandatory, there will be no make-up labs. Technical Evaluation: Each student will be graded on my technical evaluation of your proficiency in the laboratory. Staining, aseptic techniques, use and care of equipment(s), are some of the factors that will be judged. Excessive tardiness/absences and careless behavior will also be factored into the technical evaluation. Class Presentation:Class presentation is mandatory and has to be based on any topic related to the topics covered in the course. Topic and date of presentation has to be given within 15 days of starting of the semester. It will be entirely your responsibility to make sure that you have a date for the presentation. I am not responsible if you do not get dates for your presentation. Topics can be changed latter on also but not the date of the presentation. If you need any help in deciding topic or preparing a presentation please feel free to approach me.Points will be deducted if you fail to present your topic on your scheduled date. Homework Assignments: Will be posted on the web campus. Homeworkassignments will be given by Friday evening and must be turned in by the following Thursday evening by 5:15 p.m.The grading scale is as follows: Homework must be handwritten on a plain piece of paper and submitted without any reminders on the due date. Late homework assignments will not be accepted at all. Score Letter Grade 97 – 100 94- 96.99 90-93.99 87-89.99 84-86.99 80-83.99 A A AB+ B B- 77-79.99 74-76.99 70-73.99 67-69.99 64-67.99 60-63.99 00-59.99 C+ C CD+ D DF Your “up to the minute” grade for the lecture portion of the course will be posted on Web Campus in an anonymous spreadsheet. Log on to the WebCampus course and follow the instructions (filed permanently in the announcement area) to view your grade. Instructions for dropping the course:If you do not complete the course and do not formally withdraw by the drop deadline, your instructor will automatically assign you a grade of "F". And, of course, it would be lovely for you to include the drop deadline for each of your courses. For the spring 2014 semester the drop deadline is Monday, March 24, 2014. Support staff and Admissions & Records staff can give you the specific drop date for any of your courses; just ask. Congruent with this policy, "Incompletes" assigned for Fall 2013 courses and beyond, will no longer automatically become W's when the March 15, deadline hits. Instead, if you have not submitted an alternate grade before March 15 (or Oct 15 for spring courses), the "I" will become and "F". Attendance policy: Attendance in lecture is mandatory. Attendance will be taken in lecture and Labs. Students remaining absent for more than three lecture or lab classes will be given a letter grade down. Even if you come to class late or leave early it will count as absenteeism. That means if you do it twice it will be counted as one complete absence. Regular attendance is the single most important thing you can do to get and maintain a good grade. Do not forget to sign attendance sheet for every class and lab separately. Six unexcused absence will automatically result in being expelled from the class. Student support information:The Student Support and Retention office provides individualized coaching to students who are struggling in college, either academically or personally. The office houses both professional staff and peer mentors to help students navigate obstacles in their college experience and reach their academic goals. For more information visit http://www.gbcnv.edu/retention/ or call the Retention Coordinator at 775-753-2255. Lecture exam makeup policy:All the students have to take the exams at the given timed schedule. I am not going to give the exam at any other time according to your convenience. Make sure that you do not schedule anything during the lecture and lab time for the semester. In order to be fair to students taking the exams on the assigned days I am extremely restrictive with makeups. You will only be allowed to take a makeup if you present a written approved excuse before the next time the class meets. You must take the makeup exam before the exam is passed back to the rest of the class, which is usually the next class meeting. These options are only available for approved written excuses at my discretion. If you have missed an exam or know that you are going to miss one see me ASAP. Lab practical exam makeup policy: Since the lab practical are very difficult to set up, makeups will only be given in exceptional circumstances with an approved written excuse. Lab quizzes: There will be few Lab quizzes to be given at the beginning of each lab period when there is not a lab practical exam. You will be informed a week in advance of impending lab quiz. They will be based on the previous lab’s material with a few questions from the lab that will be done on the current day. These quizzes cannot be made up. Schedule: This is a preliminary schedule. I reserve the right to change any part of it. Exam dates will likely not change. But if they do, I will attempt to announce the change one week ahead of time in class. Chapter 1 3 4 5 6 7 02/25 10 11 12 13 14 15 04/01 16 17 18 19 20 04/22 21 22 23 24 25 26 05/13 Topics The Microbial world and you Observing Microorganisms through a Microscope Anatomy of Prokaryotic cells Self-Study Microbial Growth The Control of Microbial growth Exam – 1(100 points) Classification of Microorganisms The Prokaryotes The Eukaryotes Viruses, Viroids, and Prions Principles of Disease and Epidemiology Microbial Mechanisms of Pathogenicity Exam – 2 (100 points) Innate Immunity Adaptive Immunity Practical Applications of Immunity Disorders associated with the Immune system Antimicrobial Drugs Exam – 3 (100 points) Microbial Diseases of the Skin and Eyes Microbial Diseases of the Nervous system Microbial Diseases of the Cardiovascular and Lymphatic Systems Microbial Diseases of the Respiratory system Microbial Diseases of the Digestive System Microbial Diseases of the Urinary system and Reproductive System Exam – 4 (100 points) Laboratory schedule: Lab 1 Date 01/28 Exercise 1-3 Topic Introduction Aseptic Method of Transfer, Appendix B-D 3-1 Pages 154-158 Microscope Bacterial Shapes 2 02/04 3-4 3-6 3-7 Simple Stains Gram Stain Acid-Fast Stain Demo Slides: Flagella; Endospore; Capsule (lab Report #1 – Stains) 3 02/11 1-2 1-4 2-3 2-4 2-2 Preparing Culture Media Streak Plates Agar Slants Broth Cultures Colony Morphology (read only) (lab Report #2 – Different types of Cultures and medias used in Microbiology) 4 02/18 4-1 4-6 2 -8 2 - 10 2-6 2-7 Mannitol Salt Agar Mac Conkey Agar Effects of Temperature Osmotic Effects O2 - Fluid Thioglycollate O2 - Anaerobe Jar 5 02/25 5-2 5-11 5-14 5-7 Acid and Gas Production From Fermentation Degradation of Polysaccharides Degradation of Protein Differential Utilization of Citrate 6 03/04 5-3 Methyl-Red &Voges-Proskauer Tests Handout Indole Production Antibiotic Evaluation 7-2 03/11 7 8 04/01 Lab Exam 1(50 points) 03/18 5-4 5-21 5-20 Kit Unknown Identification Catalase Activity Coagulase Hemolysis of Red Blood Cells Handout Litmus milk 7-1 Kit 7-6 7-3 Snyder Test Effects of Hand washing&Hand washing Disc kit Detecting Coliforms in Water Plaque Assay (lab Report #3 – Effects of Hand washing &Synder test) 9 04/08 04/29 Kit Kit Kit 8-2 Slides Spice inhibitors Chemical preservatives Phage Assay UV Eukaryotic Microbes (Report #4 - Disease report due on 04/08/2014) Lab Exam – 2 (50 points) NOTE: One educational visit to a pathological lab is being planned. Place, day and date will be announced in the class. Attendance to this educational trip is mandatory. Americans with Disabilities Act (ADA) Statement:Great Basin College is committed to providing equal educational opportunities to qualified students with disabilities in accordance with state and federal laws and regulations, including the Americans with Disabilities Act of 1990 and Section 504 of the Rehabilitation Act of 1973. A qualified student must furnish current verification of disability. The Director of Services for Students with Disabilities (Julie G. Byrnes) will assist qualified students with disabilities in securing the appropriate and reasonable accommodations, auxiliary aids and services. For more information or further assistance, please call 775.753.2271. Student Conduct Statements:Academic dishonesty will not be tolerated and may result in a failing grade and/or reporting to GBC Administration. The students conduct policy in the current GBC catalog will be enforced. This syllabus is not a contract and is subject to change, without warning or notification, at any time. Cell Phone Policies:Cell phones must be switched OFF during lecture and lab classes and left off for the duration of the class. Neither phoning nor texting is permitted at any time. Anyone found using it will lead to confiscation of their mobile. No electronic gadgets are allowed in the class during exams. This syllabus does not in any way represent a contract. It is a reflection of the intent of the instructor, but do recognize that it is an organic construct that may change as the semester progresses. Any changes will be announced in class.