LO 3.38: The student is able to describe a model that expresses key elements to show how change in signal transduction can alter cellular response. SP 1.5: The student can reexpress key elements of natural phenomena across representations in the Domain Explanation: A signal transduction pathway is where signal transduction occurs. Signal transduction occurs when an extracellular signaling molecule activates a specific receptor located on the cell surface or inside the cell. Receptor then causes a chain of event with in the cell, causing a cellular response. Signal transduction pathways can be altered. Signal transduction pathways can be blocked by the use of drugs such as antihistamines. Also signal transduction pathways being blocked can act as a preventative against diseases. A more specific impact of drugs altering cellular response is antihistamines. This changing signal transduction is how the antihistamines block transduction by blocking the histamine that is released by the cells immune system. When a foreign antigen binds to the IgE on the mast cell there is a signal transduction that causes a release of histamine. The antihistamines bind to the receptors in which histamines are trying to activate which nullifies cellular response. Conditions where signal transduction is blocked or defective can be deleterious, preventative or prophylactic (medication designed to prevent disease). M.C. Question: Which of the following statements is true regarding a change in a signal transduction pathway A) It can lead to the deactivation of a cellular response. B) It can involve the disruption of a receptor in the cell. C) A change in the signal transduction pathway can never be harmful in a cell D) Both A and B are true Learning Log/FRQ-style Question: Identify one way in which a change in signal transduction can alter cellular response. Give one specific example of how a signal transduction pathway can be blocked. ANSWER KEY– LO 3.38 M.C. Question: Which of the following statements is true regarding a change in a signal transduction pathway A) It can lead to the deactivation of a cellular response. B) It can involve the disruption of a receptor in the cell. C) A change in the signal transduction pathway can never be harmful in a cell D) Both A and B are true Learning Log/FRQ-style Question: Identify one way in which a change in signal transduction can alter cellular response. Give one specific example of how a signal transduction pathway can be blocked. Cellular response can be altered by the signal transduction pathway being blocked , which can cause the cellular response to not occur. An example of this is antihistamine binding to a receptor that receives histamine. Which then causes no activation because histamine cannot bind. Cellular response can be altered by the signal transduction pathway. LO 2.19: The student is able to make predictions about how positive feedback mechanisms amplify activities and processes in organisms based on scientific theories and models. SP 6.4: The student can make claims and predictions about natural phenomena based on scientific theories and models. Explanation: A positive feedback loop works in the human body to enhance an already existing response. It allows for the rapid amplification of a response such as the uterine contractions generated by oxytoxin, which is rapidly increased in concentration through a positive feedback loop when a mother goes into labor. Another example is the enzyme pepsinogen, usually secreted in small quantities by the stomach. Normally, the enzyme is inactive, but when pepsinogen is converted to the active enzyme pepsin, the upregulation of pepsin signals increased conversion of pepsinogen to pepsin, until pepsin is in a large enough concentration to digest protein from food. Without the positive feedback loop, if the stomach produced large amounts of active pepsin continuously, it would digest its own cell lining. M.C. Question: Which of the following is not a function of positive feedback loops? A) Upregulating certain hormones B) Maintaining homeostasis C) Amplifying an existing response D) Providing a larger and faster response than if the cellular response did not involve a positive feedback loop FRQ-Style Question: Student A observes several samples of mouse tissue under a microscope and notes that when an incision is made in a blood vessel, a few platelets are initially released to the wound site. After an hour, she returns and is astonished to note a huge increase in platelet concentration. She continues to check up on the tissue samples each hour for 5 hours and records exponential increases in platelet concentration. Propose a reasonable biological explanation for her findings and explain your reasoning. What are the processes behind the exponentially increased platelet concentration, and why is it not always beneficial to have high concentrations of platelets in the blood? http://slideplayer.com/slide/1498558/ ANSWER KEY: LO 2.19 M.C. Question: Which of the following is not a function of positive feedback loops? A) Upregulating certain hormones B) Maintaining homeostasis C) Amplifying an existing response D) Providing a larger and faster response than if the cellular response did not involve a positive feedback loop FRQ-Style Question: Student A observes several samples of mouse tissue under a microscope and notes that when an incision is made in a blood vessel, a few platelets are initially released to the wound site. After an hour, she returns and is astonished to note a huge increase in platelet concentration. She continues to check up on the tissue samples each hour for 5 hours and records exponential increases in platelet concentration. Propose a reasonable biological explanation for her findings and explain your reasoning. What are the processes behind the exponentially increased platelet concentration, and why is it not always beneficial to have high concentrations of platelets in the blood? Platelets are produced in the bone marrow and released to circulate in the blood, where they attach to and repair incisions in blood vessels. Platelet concentration at a wound site is controlled by a positive feedback loop. Platelets circulating through nearby blood vessels will initially attach to the wound site and release PAF (platelet-activating factor), which will signal more platelets to be released into the blood from the bone marrow and attach to the wound site. This positive feedback loop continues until the platelets are in a high enough localized concentration to plug the incision by forming a clot. After the clot is formed, platelet concentration returns to normal levels. The positive feedback loop is necessary to quickly amplify platelet concentration so that a clot may stop blood leaking from the incision. Having a constant high concentration of platelets, a condition known as thrombocytosis, can lead to unnecessary clotting of blood vessels which in turn can cause heart attacks or strokes. http://images.frompo.com/bd7393b5d0f4e001ce0d563a7ba56e24 LO 3.44 • LO 3.44 – The student is able to describe how nervous systems detect external and internal signals • SP 1.2 - The student can describe representations and models of natural or manmade phenomena and systems in the domain. • • • Explanation – The ability for an organism to respond to external stimuli is called sensitivity. A stimulus is exposed to a sensory receptor, which elicits a reflex via stimulus transduction. These sensory receptors will receive info from outside the body of the organism, as in touch receptors found in the skin or light receptors in the eye, as well as internal detectors, such as chemoreceptors, which are sensory receptors that traduces a chemical signal into an action potential, and mechanoreceptors, which are excited by mechanical pressures or distortions, as those responding to touch and muscular contractions. Once stimulus reaches threshold, the neuron is fired and info is sent across synapses to the Central Nervous System (CNS), where it is integrated into a decision making process, which determines whether or not you have a reaction. M.C. Question: Which of the following is true about stimuli detection? A) Only mammals can detect different stimuli B) The Sympathetic Nervous system determines stimulus response C) Stimulus must reach a threshold during action potential to send info D) Hair receptors which make up toenails assist in lower body detection Learning Log/ FRQ-style Question: Suppose you are outside on a nature trip and a bird flies over you and poops on your hand. Explain the processes involved in detecting and processing the stimulus. Then, describe one internal and external receptor used in the human body. Answer Key Which of the following is true about stimuli detection? A) Only mammals can detect different stimuli B) The Sympathetic Nervous system determines stimulus response C) Stimulus must reach a threshold during action potential to send info D) Hair receptors which make up toenails assist in lower body detection Suppose you are outside on a nature trip and a bird flies over you and poops on your hand. Explain the processes involved in detecting and processing the stimulus. Then, describe one internal and external receptor used in the human body. Once the external stimulus of bird fecal matter is detected by sensory receptors in the eye and on the affected area of skin, the sensory input travels to different cells via the signal transduction pathway, where the stimuli signal info is received by dendrites in the neuron, and once action potential is reached due to depolarization, info is sent to the brain for interpretation which is translated into a motor output, or your reaction. An external receptor include Exteroceptors report the senses of sight, hearing, smell, taste, and touch. Internal receptors include chemoreceptors, which tranduces a chemical signal into an action potential. LO 4.3: The student is able to use models to predict and justify that changes in the subcomponents of a biological polymer affect the functionality of the molecule. SP 6.1: The student can justify claims with evidence SP 6.4: The student can make claims and predictions about natural phenomena based on scientific theories and models. Explanation: The central dogma of biology is the arise of proteins by transcription of a DNA strand into an RNA strand and the translation of that molecule into a protein. The subcomponents of proteins are amino acids. One mutation in the template strand or the transcribed RNA strand may result in a change in the structure and function of the resulting protein/amino acid sequence. DNA is read from the 3’ to 5’ ends in transcription and the resulting RNA strand in translated from 5’ to 3’. One mutation can result in an amino acid chain with an entirely different structure and function or the same structure and function due to the redundancy of the codons that code for similar amino acids. Lipids, carbohydrates and nucleic acids exhibit the same relationship between its subcomponents and its structure and function. Identifying the change and how it relates to the resulting polymer’s structure is necessary. M.C. Question:A template strand of DNA is given below. 5’- AGT-GCA-GTC-AAC-3’ Using the codon chart provided, if the cytosine (C) nearest the 3’ end was changed to thymine (T), what would the result be? A) Val is replaced by Ile B) A stop codon is produced C) No change occurs due to a silent mutation D) Thr is replaced by Asp E) Both A and D FRQ-Style Question: A template strand of DNA is given below: 5’ A G C T A A G T T C G A A T A C A G G A T C C A G C G 3’ Explain why a mutation of the bolded guanine near the 3’ end will not have an affect on the resulting protein produced. Explain why a mutation of the bolded adenine to thymine would result in a drastic change for the resulting protein. Answer Key – LO 4.3 M.C. Question:A template strand of DNA is given below. 5’- AGT-GCA-GTC-AAC-3’ Using the codon chart provided, if the cytosine (C) nearest the 3’ end was changed to thymine (T), what would the result be? A) Val is replaced by Ile B) A stop codon is produced C) No change occurs due to a silent mutation D) Thr is replaced by Asp E) Both A and D FRQ-Style Question: A template strand of DNA is given below: 5’ A G C T A A G T T C G A A T A C A G G A T C C A G C G 3’ Explain why a mutation of the bolded guanine near the 3’ end will not have an affect on the resulting protein produced. Explain why a mutation of the bolded adenine to thymine would result in a drastic change for the resulting protein. Regardless of the third base pair in the codon translated, the amino acid arginine will be produced. This type of mutation is known as a silent mutation since there is no difference between the pre and postmutated gene encoding for the protein. A mutation of the third base pair in the codon involving the bolded adenine to thymine would result in the production of a stop codon. This will drastically change the resulting protein’s structure and function. LO 4.8: The student is able to evaluate scientific questions concerning organisms that exhibit complex properties due to the interaction of their constituent parts. SP 3.3: The student can evaluate scientific questions Explanation: For example, in order for animals to obtain nutrients from their food, the food must first go through the digestive system and be processed through organs such as the stomach, which breaks down the food with enzymes, and the small intestines, which further breaks the food down into nutrients that can be absorbed through it’s lining. However, the process of moving food through the digestive system requires the use of energy, or ATP. In the processing of making ATP, oxygen is used in the ETC as a final electron acceptor. This oxygen is obtained through the respiratory system in the lungs and absorbed and transported through circulatory system. M.C. Question: Which of the following statements about system/organ interactions is true? A) The kidneys return unused nutrients into the digestive system B) The lymphatic system eliminates antigens that are found in the blood. C) When the neurons are aroused, thyroxin is released from the thymus D) The integumentary system and the muscular system work together to make and utilize vitamin D Learning Log/FRQ-style Question: The endocrine system is one of the more important bodily systems, affecting almost every other system through the use of hormones. Describe three hormones released by the endocrine system and how they affect other systems in the body. Answer Key- LO 4.8 Which of the following statements about system/organ interactions is true? A) The kidneys return unused nutrients into the digestive system B) The lymphatic system eliminates antigens that are found in the blood. C) When the neurons are aroused, thyroxin is released from the thymus D) The integumentary system and the muscular system work together to make and utilize vitamin D The endocrine system is one of the more important bodily systems, affecting almost every other system through the use of hormones. Describe three hormones released by the endocrine system and how they affect other systems in the body. When epinephrine, aka adrenaline, is released into the bloodstream by the adrenal glands, our flight or fight response is triggered. This hormone diverts blood flow by restricting blood vessels in the digestive system, thus slowing it down, and dilating blood vessels in the muscular system, giving the muscles more oxygen and thus the energy needed to flee in a stressful situation. Antidiuretic hormone, or ADH, is released by the pituitary gland to regulate water in the body. When water levels are low in the blood, the hypothalamus signals to the pituitary gland to release ADH which then travels to the kidneys in the urinary system, causing a higher uptake of water and more concentrated urine. When water levels are high, ADH production is stopped and less water is taken up. Parathyroid hormone is a hormone released by the parathyroid used to control calcium levels in the blood. As calcium levels become low, PTH stimulates the release of calcium, slowing down the formation of new bones in the skeletal system. High levels of PTH can cause kidney disease and weak bone structure. LO 2.3: The student is able to predict how changes in free energy availability affect organisms, populations, and ecosystems. SP 6.4: The student can make claims and predictions about natural phenomena based on scientific theories andexperience models. a logical pathways of energy synthesis. Explanation: All organisms that consume or make energy As in the ten step anaerobic process of glycolysis, a six-carbon molecule is broken down into 3-carbon molecules of G3P that will be turned into pyruvate. The pyruvate can later be used to produce more ATP. Two ATP are consumed in the production of the two pyruvates, steps one and three being catalyzed by kinases. Whereas energy is consumed in the first five steps of glycolysis, the next five steps produce energy. Four ADPs are phosphorylated and turned into ATPs in steps seven and ten, also carried out by kinases. All the ATP produced is a result of all G3P molecules made in steps four and five. Two NADH and four ATPs are made, though there is only a net of two ATP, the other two being spent to create the two pyruvate of the first and third steps. The electron carrier NADH is formed in the sixth reaction by an enzyme. NADH will eventually helps to carry electrons down the electron transport chain that will create even more ATP by spinning the ATP synthase during oxidative phosphorylation. ATP drives many other biochemical pathways such as anaerobic fermentation or the aerobic Krebs cycle. MC Question: When plants are overwatered and consequently experience oxygen deprivation during their period of dark respiration (taking in oxygen and releasing carbon dioxide at night), they begin anaerobic respiration. Which of these steps will the plant NOT undergo? a) the plant will die in a few days due to lack of oxygen and its inability to produce enough ATP to sustain itself b) a decrease in the amount of ATP produced c) a lengthening of the roots to reach drier soil d) self-fermentation of the plant via the creation of ethanol FRQ Question: Polar pyruvate must experience active transport across the mitochondrial membrane in order to facilitate the Krebs cycle in the form of Acetyl CoA. Describe how Acetyl CoA is produced and the process carried out by this molecule. Diagrams may be incorporated into your answer. • MC Question: When plants are overwatered and consequently experience oxygen deprivation during their period of dark respiration (taking in oxygen and releasing carbon dioxide at night), they begin anaerobic respiration. Which of these steps will the plant NOT undergo? • a) the plant will die in a few days due to lack of oxygen and its inability to produce enough ATP to sustain itself example diagram • b) a decrease in the amount of ATP produced • c) a lengthening of the roots to reach drier soil • d) self-fermentation of the plant via the creation of ethanol FRQ Question: Polar pyruvate must experience active transport across the mitochondrial membrane in order to facilitate the Krebs cycle where it is converted to Acetyl CoA. Describe how Acetyl CoA is produced and the process it aids. Diagrams may be incorporated into your answer. Acetyl CoA is a product of broken down carbohydrates from glycolysis and fatty acid oxidation which contributes the coenzyme A. In the membrane, carbon dioxide is broken off from pyruvate, which is then oxidized by NAD+, creating Acetyl CoA by adding the coenzyme A. Two carbon dioxide molecules are lost and two NADH, eventual electron carriers, are made from the oxidization of citric acid. Carbon joins the Acetyl CoA but is replaced by a phosphate group, creating an ATP molecule. Two hydrogens are then lost, and FAD is turned into FADH2, which will be oxidized to produce ATP. Since the Krebs cycle LO 1.12: The student is able to connect scientific evidence from many scientific disciplines to support the modern concept of evolution SP 7.1: The student can connect phenomena and models across spatial and temporal scales Explanation: The concept of evolution is supported by many different scientific disciplines. Paleontologists have studied fossils, finding homologous structures bones of the same shape and/or function found across many different species - which indicate a common ancestor. Additionally, the study of genetics has supported evolution. Scientists have been able to examine DNA sequences of many different species. In doing so, they have found that segments of identical DNA sequences can be found in different species. Because of biostatistics, and specifically the BLAST database, scientists are able to compare the DNA of many different species whose DNA has been sequenced and added to the database. More similarities in the DNA indicate evolution from a more recent ancestor. Even research at the cellular level is supportive of evolution. The endosymbiotic theory states that a bacteria engulfed another prokaryotic cell - creating a symbiotic relationship and giving rise to eukaryotes as we know them today. Evolutionary biology, such as the studies done on the Galapagos islands by Charles Darwin, have shown how environmental stress can change the allelic frequency in a gene pool. M.C. Question: Student A is examining diagrams that show the shape of a human skull and that of a gorilla and suggests that their similar structure and function strongly suggest a common ancestor for the two species. Student B states that only examination of the DNA of the two species could possibly indicate a common ancestor for the two species. Which student is correct and why? A. Student B - genetic testing is a far more advanced method of determining the possibility of a common ancestor. B. Student B - student A has pointed out an analogous structure, developed over time from exposure to a similar environment. C. Student A - this examination of fossils has lead him to the correct conclusion that the gorilla and human skulls are homologous structures, providing evidence that the two descended from a common ancestor. D. Neither student is correct - neither genetic biology or paleontology can be used to suggest evolution. Only long evolutionary studies like that of Charles Darwin can do that. Learning Log/FRQ style Question: The concept of evolution has been supported throughout many scientific disciplines. Choose three pieces of evidence supporting evolution and explain how they do. Student A is examining diagrams that show the shape of a human skull and that of a gorilla and suggests that their similar structure and function strongly suggest a common ancestor for the two species. Student B states that only examination of the DNA of the two species could possibly indicate a common ancestor for the two species. Which student is correct and why? A. Student B - genetic testing is a far more advanced method of determining the possibility of a common ancestor. B. Student B - student A has pointed out an analogous structure, developed over time from exposure to a similar environment. C. Student A - this examination of fossils has lead him to the correct conclusion that the gorilla and human skulls are homologous structures, providing evidence that the two descended from a common ancestor. D. Neither student is correct - neither genetic biology or paleontology can be used to suggest evolution. Only long evolutionary studies like that of Charles Darwin can do that. The concept of evolution has been supported throughout many scientific disciplines. Choose three pieces of evidence supporting evolution and explain how they contribute to the concept of evolution. Charles Darwin’s study of the Galapagos Islands found the sizes of finch beaks varied amoung the islands proportionally to the types and sizes of nuts and berries available. This showed how natural selection selects for traits beneficial to the species as their environmental stress shifts, changing the allelic frequency of the gene pool and showing evolution. Paleontologists have studied fossils, like those of homo-erectus, homo-habillus, and homo-sapien sapien. The structures of their bones show slow evolutionary changes to better suit our species to our environment. Also, use of biostatistics like the BLAST database can be examined. A quick BLAST may find that the DNA of two distinct species may be as similar as 90%, clearly indicating evolution from a fairly recent ancestor. LO 2.4: The student is able to use representations to pose scientific questions about what mechanisms and structural features allow organisms to capture, store and use free energy. SP 1.4 The student can use representations and models to analyze situations or solve problems qualitatively and quantitatively. SP 3.1 The student can pose scientific questions. Explanation: Plants capture and store free energy through photosynthesis. In this, chlorophyll in chloroplasts absorb light energy, which excites electrons in Photosystem II and I, which are embedded in the membrane. When the excited electrons are transferred along an electron transport chain, a proton gradient is formed across the thylakoid membrane. These protons then undergo facilitated diffusion through ATP synthase to be sent to the Calvin Cycle, along with the NADPH created when the electrons reach the end of the chain. In the Calvin Cycle, these are used along with CO2 to make a simple sugar, CH2O. This sugar molecule is how the free energy is stored after being captured in the light reactions. This can then be used in cellular respiration, which makes ATP for the cell to be able to do work. M.C. Question: When glucose is split into pyruvate during glycolysis what kind of reaction is this? A) Endergonic because it releases energy B) Exergonic because it requires energy C) Exergonic because it releases energy D) Endergonic because it requires energy FRQ-style Question: Aerobic respiration produces 19 times as much ATP as anaerobic respiration. Describe why this is and include a description of both mechanisms. ANSWER KEY – LO 2.4 When glucose is split into pyruvate during glycolysis what kind of reaction is this? A) Endergonic because it releases energy B) Exergonic because it requires energy C) Exergonic because it releases energy D) Endergonic because it requires energy Aerobic respiration produces 19 times as much ATP as anaerobic respiration. Describe why this is. Include a description of both mechanisms. In aerobic respiration, glucose enters the cell and is split into 2 pyruvate molecules and produces a net of 2 ATP. The pyruvate enters the mitochondria and is converted into acetyl CoA, which can be used in the Citric acid (Krebs) cycle, which produces 2 ATP since there are two pyruvate. This cycle also makes NADH and FADH2 that will be used in oxidative phosphorylation. This includes the electron transport chain and chemiosmosis. The NADH and FADH2 release the electrons they were carrying onto the chain, which creates a high proton concentration in the intermembrane space. These electrons are pulled along the chain by the Oxygen at the end, and make water when they get there. When the protons undergo facilitated diffusion to achieve equilibrium, they pass through ATP synthase, which creates between 32 and 34 ATP. This comes to around 38 ATP total from one glucose molecule. In anaerobic respiration, the oxygen is not present, so the electron transport chain cannot function. Instead, the glucose is split into the two pyruvate and 2 ATP is made. But then the pyruvate is fermented in the cytosol into lactate or ethanol. This makes a total of only 2 ATP, as compared to 38 from aerobic respiration. LO 1.28: The student is able to evaluate scientific questions based on hypotheses about the origin of life on Earth SP 3.3: The student can evaluate scientific questions Explanation: There are several theories as to how life became on Earth. One theory hypothesizes that the primitive atmosphere contained inorganic precursors from which organic molecules could have been synthesized through natural chemical reactions catalyzed by the input of energy. These molecules then served as monomers for the formation of more complex molecules like amino acids and nucleotides. Other theories and models suggest that primitive life developed on biogenic surfaces such as clay, that served as templates and catalysts for the assembly of macromolecules. The question is still unanswered as to whether the first genetic and self-replicating material was DNA or RNA. Stanley Miller and Harold Urey conducted an experiment that involved running an electric current through an apparatus containing molecules believed to represent the atmospheric conditions of early Earth. Through this experiment, they observed the formation of some organic compounds as well as amino acids. The theory of Endosymbiosis explains the origin of chloroplasts and mitochondria and their double membranes. This concept postulates that chloroplasts and mitochondria are the result of years of evolution initiated by the endocytosis of bacteria and blue-green algae. According to this theory, blue green algae and bacteria were not digested; they became symbiotic instead. M.C. Question: The Endosymbiotic theory gives the reason for the origin of the mitochondria and what other organelle? A) Ribosomes B) Golgi apparatus C) Cilia D) Chloroplast FRQ: What was the Miller-Urey experiment and how was it performed? What were the results of the experiment? Answer Key- LO 1.28 The Endosymbiotic theory gives the reason for the origin of the mitochondria and what other organelle? A) Ribosomes B) Golgi apparatus C) Cilia D) Chloroplast What was the Miller-Urey experiment and how was it performed? What were the results of the experiment? The Miller-Urey experiment was an experiment that simulated they conditions similar to primitive Earth using an apparatus. This apparatus contained methane, ammonia, hydrogen, and water, along with a continuous electric current to simulate lightning. Analysis of the experiment was done by chromatography. At the end of one week, Miller observed that as much as 10-15% of the carbon was now in the form of organic compounds. Two percent of the carbon had formed some of the amino acids which are used to make proteins. And in conclusion, Miller's experiment showed that organic compounds such as amino acids, which are essential to cellular life, could be made easily under the conditions that scientists believed to be present on the early earth. LO 3.17 The student is able to describe representations of an appropriate example of inheritance patterns that cannot be explained by Mendel’s model of the inheritance of traits. SP 2.1: The student can describe representations and models of natural or man-made phenomena and systems in the domain. FRQ Question: Gray and Kate are having an argument. Gray argues that it is possible to determine blood types using the basic Mendelian model. Kate argues that Gray is wrong, and that blood groups in humans are determined by multiple alleles of a single gene. Who is right and why? Explain why the concept of the Mendelian model and the concept of multiple alleles contrast each other. Name an additional example of a discovery in science that contradicts the original Mendelian model. Explain. Explanation: Mendel’s model only provides two alleles, and a way to determine genotypes and phenotypes through one gene. However, other later discoveries in science have proved more complex than this basic genetic model, such as phenomena like pleiotropy and multiple alleles. The main example in science is blood types, and the student should be able to recognize this as a major example of an exception, along with being able to recognize that some diseases and traits are a result of a more complex inheritance pattern. The student is able to describe representations in the body of ways in which certain phenotypes cannot be explained by the Mendel model, and could be a result of multiple genes, alleles, mutations, etc. , with thorough explanations of alternative inheritance patterns. Multiple Choice Question: Which of the following is an example of an inheritance pattern that cannot be explained by Mendel’s model of inheritance of traits? A. Achondroplasia B. Sickle Cell Disease C. Cystic Fibrosis By Laura Nicklas, 4th period D. Tay Sachs Disease LO 3.17 Answer Key Multiple Choice Question: Which of the following is an example of an inheritance pattern that cannot be explained by Mendel’s model of inheritance of traits? A. Achondroplasia B. Sickle Cell Disease C. Cystic Fibrosis D. Tay Sachs Disease FRQ Response Gray and Kate are having an argument. Gray argues that it is possible to determine blood types using the basic Mendelian model. Kate argues that Gray is wrong, and that blood groups in humans are determined by multiple alleles of a single gene. Who is right and why? Explain why the concept of the Mendelian model and the concept of multiple alleles contrast each other. Name an additional example of a discovery in science that contradicts the original Mendelian model. Explain. Kate is right. In Mendel’s model, only two alleles exist. However, in real life, most genes in populations have more than two allelic forms. Blood groups in humans, ABO, come from multiple alleles of a single gene, resulting in four possible phenotypes, and arise from three different alleles in red blood cells. For example, an enzyme encoded by the i allele adds neither A or B. The concept of multiple alleles contradicts the Mendelian model because the model only has two alleles. Another example is epistasis. This is when a gene at one locus alters the phenotypic expression of a gene at a second locus. The original Mendelian model only addresses one gene, while epistasis involves the interaction between two genes and their effect on phenotypes. LO 2.32: The student is able to use a graph or diagram to analyze situations or solve problems (quantitatively or qualitatively) that involve timing and coordination of events necessary for normal development in an organism. SP 1.4: The student can use representations and models to analyze situations or solve problems qualitatively and quantitatively. Explanation: For a developing organism timing and coordination of events play an important role in the normal development of an organism. For many plants seeds will only germinate when the conditions are right for that species. During embryonic development cell undergo differentiation to determine cell fate. Transcription factors will activate the appropriate homeotic genes to determine the key to cell, tissue, organ, and organism identity. This will result in sequential gene expression and through the use of extracellular signals we see coordination between the adjacent cells that leads to sequential gene expression and differentiation. Apoptosis also plays an important role in embryonic development by contributing to the appropriate formation of various organs and structure. This whole process of embryonic induction in development results in the correct timing of events so that organisms can develop normally. •M.C. Question: Which of the four graphs would you expect to represent the cell count over time for a region that is undergoing apoptosis? A) A B) B C) C D) D •Free Response: Based on the above diagram why would it be beneficial for a seed to germinate very quickly in the optimal temperature while taking long periods of time to germinate when it is higher or lower than the optimal temperature. What other conditions could effect germination. Answer Key-LO 2.32 •M.C. Question: Which of the four graphs would you expect to represent the cell count over time for a region that is undergoing apoptosis? •A)A B)B C)C D)D •Free Response: Based on the above diagram why would it be beneficial for a seed to germinate very quickly in the optimal temperature while taking long periods of time to germinate when it is higher or lower than the optimal temperature. What other conditions could effect germination. It would be beneficial for the seed to germinate quickly when the optimum temperatures are available because it would be during those times that conditions would be best suited for that organism to survive in. It is beneficial to wait longer periods of time when conditions are not optimal because if it were to germinate then its chances of survival would be diminished. Other conditions that could effect germination could be availability of water, availability of oxygen in the soil, and availability of sunlight. LO3.49:The Student is able to create a visual representation to describe how nervous system transmit information. SP 1.1:The student can create representations and models of natural or man-made phenomena and systems in the domain. Signals are sent down dendrite to the neuron from the axon hillock down the axon down the cell body by jumping node to node thanks to the node of Ranvier by 120 m/sec. It has two channels Na+ or K+; K+ channels open letting K+ in this becomes more negative (hyperpolarization) or positive by Na+ channels (depolarization). When axon charge hits its threshold of -55mv by Na+ going in, it’s a action potential. To reset it self it opens K+ channels & opposite attract allowing Na+ out the neuron till it’s back to -70mv. The end of axon chemical synapse is used to change electric signal to chemical back to electric to travel down the neuron. Because of the action potential getting to terminus of the pre-synaptic cell; this cause volted gated Ca+2 channels to open allowing it to diffuse in the concentration gradient. Allowing vesical holding the neurotransmitter to fuse with membrane; letting neurotransmitter to bind on the cell; which is used to open the ligand gated channels to let in K+ or Na+ in the cell till it’s remove M.C.? Which of the statements is false of a signal going down the axon? A.When reaching a threshold of -55mv Na+ channels open and K+ close to reset the neuron back to its original point of -70mv B.Chemical synapse is used to be able to “jump” the signal down to the next neuron C. Action potential signal goes further away because it’s positive and is attracted to the negative charge further down. D. Dendrite receives the signal which is sent down to the axon hillock which is sent down to the axon. Learning Log/FRQ-Style Suppose you were asked what are the many different ways for a signal to be stopped and describe how and why does it stop it. Answer Key M.C.? Which of the statements is false of a signal going down the axon? A.When reaching a threshold of -55mv Na+ channels open and K+ close to reset the neuron back to its original point of -70mv B.Chemical synapse is used to be able to “jump” the signal down to the next neuron C. Action potential signal goes further away because it’s positive and is attracted to the negative charge further down. D. Dendrite receives the signal which is sent down to the axon hillock which is sent down to the axon. Suppose you were asked what are the many different ways for a signal to be stopped and describe how and why does it stop it. The signal can be stop neuron dendrites is not able to receive the signal to pass down the cell body to the axon hillock to lead it to the axon so it can be sent down the cell. And down the axon there could Na+ channels not opening to cause an action potential to be release and stay at -70mv this stops the signal from being able to happen at all. Last is it goes down the neuron but is not passed down chemical synapse to be passed to other neruons this could be by the action potential being pass down or the neurotransmitter is not being able to reach the ligand because of no diffusion thru the concentrated gradient or the receptor is deformed to not fit the shape. With out the neuron being able to send down a signal then there is no possible way for it to respond to pain which can cause long LO 1.15: The student is able to describe specific examples of conserved core biological processes and features shared by all domains or within one domain of life, and how these shared, conserved core processes and features support the concept of common ancestry for all organisms SP 7.2: The student can connect concepts in and across domain(s) to generalize or extrapolate in and/or across enduring understandings and/or big ideas. Explanation: Amongst all forms of life (Archaea, Bacteria, and Eukarya, both extant and extinct), there exists 3 main things that we all share: DNA and RNA as carriers of genetic information, a universal genetic code, and many metabolic pathways. On top of that, Eukaryotes also share the presence of a cytoskeleton (a network of structural proteins that facilitate cell movement, morphological integrity and organelle transport), a nucleus, membrane-bound organelles (mitochondria and/or chloroplasts) , linear chromosomes and endomembrane systems. These lead to the fact that all organisms both living and dead are descendants of a single common and universal ancestor, and that we all evolved from it initially, M.C. Question: Of the following core biological processes, which are shared by all domains of life? I: Membrane Bound Organelles in all cells II: DNA or RNA as genetic code III: A nucleus in all cells IV: Metabolic pathways A) I only B) II only C) I and III D) II and IV Free Response Question : Explain 2 core biological processes or features that all living things both share and have shared since a single common ancestor. Justify your answers with descriptions of each process. M.C. Question: Of the folowing core biological processes, which are shared by all domains of life? I: Membrane Bound Organelles in all cells II: DNA or RNA as genetic code III: A nucleus in all cells IV: Metabolic pathways A) B) C) D) I only II only I and III II and IV Free Response Question : Explain 2 core biological processes or features that all living things both share and have shared since a single common ancestor. Justify your answers with descriptions of each process. All forms of life have some sort of genetic material, specifically DNA or RNA, which doesn't have to be inside a nucleus (bacteria). This genetic material must be transcribed, translated and replicated in some way. Additionally, major features of this genetic code must be somewhat similar to all other living things (DNA is made up of A, T, C, and G). The second thing shared by all organisms is that metabolic signaling transduction pathways are present, whether it be a response to external signals by bacteria that influences cell movement or epinephrine stimulation of glycogen breakdown in mammals. L.O. 2.21 – The student is able to justify the selection of the kind of data needed to answer the scientific questions about the relevant mechanism that organisms use to respond to changes in their environment. S.P. 4.1 - The student can justify the selection of the kind of data needed to answer a particular scientific question. Explanation – One of an organisms primary goals is to maintain homeostasis, meaning it wants to maintain a constant balance inside the body of necessary life functions. This, however, is not always possible. When an organism encounters an outside stress, they will use an adaptation that allows them to maintain energy. For example: in very hot or cold temperatures, when resources might be scarce, some animals go into what is called torpor, a physiological state in which activity is low and metabolism decreases. In a long term scenario torpor is called hibernation. Other organisms have similar mechanisms such as sweating and shivering in humans, circadian rhythm in animals, or chemotaxis in bacteria. Thus, this objective means one must be able to select the kind of data (quantitative vs. qualitative) necessary to explain what type of mechanism you’re talking about. For example, the chart below is an example of quantitative data, giving a numerical summary of metabolism use during hibernation. (Figure: Metabolism during hibernation chart). MC – If a Belding’s Ground Squirrel population is hibernating during the winter, and you wanted to see how much energy stored as body fat was being used as a percentage, what data would you be looking at, and would it be qualitative or quantitative. (a) Glucose use, quantitative (b) Glucose use, qualitative (c) Lipid use, quantitative (d) Lipid use, qualitative (e) Steroid use, quantitative Free Response – You are studying hibernation in grizzly bears and you want to see how antibody production was affected during hibernation (a) Design an experiment to test the amount of antibodies present in a grizzly bear’s system before and after hibernation. (b) Justify what type of data you would use in this experiment, and why you would be using it in this context. MC – If a Belding’s Ground Squirrel population is hibernating during the winter, and you wanted to see how much energy stored as body fat was being used as a percentage, what data would you be looking at, and would it be qualitative or quantitative. (a) Glucose use, quantitative (b) Glucose use, qualitative (c) Lipid use, quantitative (d) Lipid use, qualitative (e) Steroid use, quantitative FRQ – You are studying hibernation in grizzly bears and you want to see how antibody production was affected during hibernation (a) Design an experiment to test the amount of antibodies present in a grizzly bear’s system before and after hibernation. (b) Justify what type of data you would use in this experiment, and why you would be using it in this context. (a) – I would take a sample of the population of grizzly bears and randomly select them for either the control or the experimental unit. First we would test each bear for the presence of antibodies in their systems at that moment. The bears would be separated into a group that would be allowed to hibernate normally and a group that would be kept awake during the winter using artificial conditions. At the end of the hibernation period both groups of bears would have an antibody count done to see if while in hibernation, there was an immune system build up. (b) - The primary measurements would be quantitative data, based on the fact that we are measuring the number of antibodies/immunoglobulin's in the bears system. This numerical count will give us a much better picture of the immune system affects of hibernation than an observational data summation. There is, however, an opportunity to collect qualitative data as well. You ought make observational notes on the frequency and type of diseases a bear could catch, or on the physical appearance of the two sets of bears. These would also be valid qualitative observations to make. signaling pathway. SP 1.4: The student can use representations and models to analyze situations or solve problems qualitatively and quantitatively. Explanation: Paracrine signaling involves local signaling, while endocrine signaling refers to long distance signaling involving hormones. The first stage of a general cell signaling pathway is reception, where the ligand (a signal molecule) binds to a receptor. Then, the received signal is converted to a specific cellular response via relay proteins in the process of transduction. Lastly, the cell responds to the signal. There are four different kinds of receptors: intracellular (completely inside cell), g-protein linked (integral protein), receptor tyrosine kinases (phosphorylates other molecules), and ion channel receptors ligand binding (makes receptor form a dimer). For example, a pathway between a steroid hormone and intracellular receptor begins with the hormone passing through the plasma membrane. Then, testosterone binds to a receptor protein to activate it the cytoplasm. Next, the hormone receptor complex enters the nucleus to bind to particular genes. This bound protein promotes the transcription of the gene into mRNA, which is finally translated into a specific protein. Transduction is the conversion of a received signal to a specific cellular response by the phosphorylation of protein. The signal transduction pathway is the first step in a chain of molecular interactions that activates another protein that activates another molecule, and so on. Relay proteins bring a signal from the receptor to a response. Also, a single ligand can activate millions of molecules during a cell’s response to create signal amplification. The same signal can also create different responses because of different receptor types, different relay proteins, and cross talking with different signals. Scaffolding proteins bind several different molecules together for quicker communication. Signaling molecules that interact with a target cell activate second messengers, like cAMP and calcium ions. M.C. Question: Many signal molecules in animals produce response in target cells with signal transduction pathways that increase the concentration of cytosolic calcium ions. Why does a small change in the amount of ions represent a relatively large change in percentage of calcium concentration? A) Calcium ions are actively transported out of the cytosol from the ER and are actively transported into the cell, so the calcium concentration in the ER is lower than that of the cytosol. B) Calcium ions are actively imported from the cytosol into the ER and are actively transported out of the cell, so the calcium concentration in the ER is higher than that of the cytosol. C) Calcium ions are actively imported from the cytosol into the ER and are actively transported out of the cell, so the calcium concentration in the ER is lower than that of the cytosol. D) Calcium ions are actively transported out of the cytosol from the ER and are actively transported into the cell, so the calcium concentration in the ER is higher than that of the cytosol. Learning-Log/FRQ Style question: Part a: Explain why liver cells and heart cells respond to some signals but ignore others, and why some signals trigger different responses in both, despite the fact both are exposed to local regulators and hormone molecules via the blood stream. (ex: epinephrine stimulates liver to break down glycogen, but causes heart to contract) Part b: Explain why a small number of epinephrine molecules binding to the receptors on the surface of a liver cell leads to the release of hundreds of millions of glucose molecules from glycogen. ANSWER KEY- LO 3.33 Many signal molecules in animals produce response in target cells with signal transduction pathways that increase the concentration of cytosolic calcium ions. Why does a small change in the amount of ions represent a relatively large change in percentage of calcium concentration? A) Calcium ions are actively transported out of the cytosol from the ER and are actively transported into the cell, so the calcium concentration in the ER is lower than that of the cytosol. B) Calcium ions are actively imported from the cytosol into the ER and are actively transported out of the cell, so the calcium concentration in the ER is higher than that of the cytosol. C) Calcium ions are actively imported from the cytosol into the ER and are actively transported out of the cell, so the calcium concentration in the ER is lower than that of the cytosol. D) Calcium ions are actively transported out of the cytosol from the ER and are actively transported into the cell, so the calcium concentration in the ER is higher than that of the cytosol. Describe the following effects of the properties of transduction pathways on cells. Part a: Explain why liver cells and heart cells respond to some signals but ignore others, and why some signals trigger different responses in both, despite the fact both are exposed to local regulators and hormone molecules via the blood stream. (ex: epinephrine stimulates liver to break down glycogen, but causes heart to contract) Part b: Explain why a small number of epinephrine molecules binding to the receptors on the surface of a liver cell leads to the release of hundreds of millions of glucose molecules from glycogen. a) Liver cells and heart cells posses different collections of proteins, as they are different kinds of cells. The collection of signal receptor proteins, proteins to carry out the response, and relay proteins controls the response of a specific cell to a signal. Liver and heart cells differ in the proteins that handle and respond to the signal, so their response to epinephrine is specific to their cell. b) Elaborate enzyme cascades in this signaling pathway cause signal amplification, which is a result of proteins persisting in their active state for a long period of time. During this period of time, they process many substrate molecules before becoming inactivating again. LO 4.7 The student is able to refine representations to illustrate how interactions between external stimuli and gene expression result in specialization of cells, tissues and organs. SP 1.3: The student can refine representations and models of natural or man-made phenomena and systems in the domain. Explanation: Interactions between external stimuli and gene expression result in specialization and divergence of cells, organs and tissues. In development, interactions between regulated gene expression and external stimuli, such as temperature or nutrient levels or signal molecules, result in specialization of cells, organs and tissues. Differentiation of the germ layers during vertebrate gastrulation is an example of one such divergence. The progression of stem cells to terminal cells can also be explained by the interaction of stimuli and genes. Additionally, cells, organs and tissues may change due to changes in gene expression triggered by internal cues, including regulatory proteins and growth factors, which result in the structural and functional divergence of cells. M.C. Question: Which of the following is an example of an outside stimulus influencing gene expression? A) The gradual growth and development of a Himalayan rabbit in normal conditions. B) Himalayan rabbits that carry the C gene which codes for the pigments in their fur, skin, and eyes, and whose expression is regulated by temperature. C) Increase in number of white Himalayan rabbits during Winter, because their fur color blend in with the environment making them harder to capture and kill. D)Development of two different species of Himalayan rabbits because of geographical isolation. Learning Log/ FRQ-style Question: Suppose you are testing the rate of metamorphosis of a specific species of tadpole. You begin your experiment with two randomly selected tadpoles from the same environment; Tadpole A and Tadpole B. You allow Tadpole A to develop into a adult frog in it’s species’ ideal developmental conditions. You place Tadpole B in an environment with increased temperature and less available resources. Is it possible for the Tadpole A and Tadpole B to both develop into adult frogs and be about the same size and weight at the end of their developmental period? Why? Answer Key LO 4.7 Which of the following is an example of an outside stimulus influencing gene expression? A) The gradual growth and development of a Himalayan rabbit in normal conditions. B) Himalayan rabbits that carry the C gene which codes for the pigments in their fur, skin, and eyes, and whose expression is regulated by temperature. C) Increase in number of white Himalayan rabbits during Winter, because their fur color blend in with the environment making them harder to capture and kill. D)Development of two different species of Himalayan rabbits because of geographical isolation. Suppose you are testing the rate of metamorphosis of a specific species of tadpole. You begin your experiment with two randomly selected tadpoles from the same environment; Tadpole A and Tadpole B. You allow Tadpole A to develop into a adult frog in it’s species’ ideal developmental conditions. You place Tadpole B in an environment with increased temperature and less available resources. Is it possible for the Tadpole A and Tadpole B to both develop into adult frogs and be the about same size and weight at the end of their developmental period? Why? What would that be an example of? Yes, it is possible for the two tadpoles to have both matured into adult frogs that are about the same size and weight by the end of their allotted developmental periods. Tadpole B could grow into an adult frog that is just as healthy as Tadpole A. The adverse environmental conditions could trigger a hormone release that would allows Tadpole B to create specialized cells helping it survive in its environment. That would be an example of environmental factors influencing gene expression. LO 3.41: The student is able to create a representation that describes how organisms exchange information in response to internal changes and external cues, and which can result in changes in behavior. SP 1.1: The student can create representations and models of natural or man-made phenomena and systems in the domain. Explanation: Organisms exchange information because cooperative behavior increases fitness of an individual and the survival of a population. The success of information exchange is seen in the behavior of pack animals. Natural selection favors innate and learned behaviors that increase survival. Our Brain has evolved into a master neurological center that processes signals and directs responses. Learned behaviors are behaviors that are learned and acquired to increase reproductive success. Innate behaviors are instincts that organisms are born with that increase reproductive success. Organisms learn avoidance behavior to things that can harm them like electric fences, poisons, or traps, thus increasing their reproductive fitness. Animals use many different types of signals to exchange information. For example, honey bees perform certain dances to indicate which direction food is, and birds sing to impress mates or proclaim territories. Living systems use a variety of signal behaviors that change the behavior of other organisms and result in reproductive success. Coloration in flowers is one of these signal behaviors. Flowers with bright colors attract pollinators which increases the reproductive success of that flower. Poison frogs use predator warnings such as bright colors which predators understand to stay away from; increasing the reproductive success of the frog. M.C. Question: Which of the following statements is not an example of a learned behavior? A) Frank, Mr. Smith’s dog, tried to cross the street, but he was shocked by the electric fence. Ever since this incident, Frank has not attempted to leave the yard. B) James, a snake in the Amazon rainforest, watched his brother die after eating a poison dart frog. Ever since this tragedy, James has been on a strict diet completely avoiding poison dart frogs. C) Miranda, a Tulip from the garden, has a beautiful yellow color. Because of her color, she attracts all of the bees which increases her reproductive success. D) Mark, a robin in the oak tree, wanted a wife so he became the best singer in the whole village. Because of this, Mark could choose a wife of any ladybird he wanted. FRQ: Explain why each of the following is an advantage or disadvantage in terms of reproductive success: 1.The fight or flight response is triggered after a hungry bear begins to chase you. 2.A poison amphibian is not colorful. 3.Tulips are bright yellow flowers. 4.Birds sing hundreds of songs throughout the day. 5.Honey Bees do a waggle dance to communicate with other bees. M.C. Question: Which of the following statements is not an example of a learned behavior? A) Frank, Mr. Smith’s dog, tried to cross the street, but he was shocked by the electric fence. Ever since this incident, Frank has not attempted to leave the yard. B) James, a snake in the Amazon rainforest, watched his brother die after eating a poison dart frog. Ever since this tragedy, James has been on a strict diet completely avoiding poison dart frogs. C) Miranda, a Tulip from the garden, has a beautiful yellow color. Because of her color, she attracts all of the bees which increases her reproductive success. D) Mark, a robin in the oak tree, wanted a wife so he became the best singer in the whole village. Because of this, Mark could choose a wife of any ladybird he wanted. FRQ: Explain why each of the following is an advantage or disadvantage in terms of reproductive success: 1.The fight or flight response is triggered after a hungry bear begins to chase you. 2.A poison amphibian is not colorful. 3.Tulips are bright yellow flowers. 4.Birds sing hundreds of songs throughout the day. 5. Honey Bees do a waggle dance to communicate with other bees. 1. The fight or flight response when a hungry bear begins to chase you is an advantage and increases reproductive success. The fight response would increase the amount of adrenaline and other stress hormones in you body, giving you the ability to out run the bear. 2. This is a disadvantage and decreases reproductive success for the amphibian. Even though a poison amphibian is toxic to anything that eats it, since it is not colorful it does not provide predator warning. Therefore, a predator would still attack, eat, and kill the amphibian with out knowing it is toxic. 3. This is an advantage and increases reproductive success for the Tulip. Because the Tulip is bright and pretty, it will attract more pollinators than a less attractive flower. 4. This is a reproductive advantage because the more songs birds sing, the better chance they have at attracting a mate. Singing also provides protection for the birds by helping them proclaim and warn others of their territory. 5. Dancing is an advantage and increases reproductive success in honey bees. When a bee finds food, it communicates to its hive by doing a waggle dance to show which direction the food is. This helps the hive eat and reproduce. LO 4.19: The Student is able to use data analysis to refine observations and measurements • regarding the effect of population interactions on patterns of species distribution and abundance. SP 5.2: The student can refine observations and measurements based on data analysis. Explanation: All populations are connected, so it is important to understand what connects two species or populations, and why one effects the other. Species distribution is how a particular species is spaced out amongst each other. These patterns are typically called random, uniform, or clumped. Species abundance is typically used to show a correlation between two species that are correlated through either mutualism, where they both benefit, commensalism, where one species benefits while the other is unaffected, parasitism, where one species lives off another and harms it, and predation, where one species hunts the other. A keystone species is a species that has a large effect on the rest of its environment based on their abundance. All of these relationships between one species and another can be shown graphically, with time on the x axis and population abundance on the y axis. Based on the graphs given, you can see that as the hare population rises, the lynx population rises because they can be sustained by the large hare population, but as they kill hares, there are less left for them, so less lynxes can be supported, so their abundance decreases. Parasitism works similarly- if the abundance of parasites is too much, they kill the hosts, which they live off of, so they die back and as their number decreases, the hosts can increase because there are less parasites. In a keystone species graph, the keystone species is easily identified because if the keystone species abundance goes up or down, the entire rest of their ecosystem is effected. M.C. Question : Based on the graph, the relationship between the moose and wolf populations Can best be defined as……….. A) B) C) D) Parasitism Mutualism Predation Commensalism Learning Log/FRQ If species A’s abundancy increases as Species B’s abundancy decreases, which symbiotic Relationship(s) do species A and B represent? Sketch a graph of the relationship and explain why it Cannot be mutualism. LO 4.19 answer slide Based on the graph, the relationship between the moose and wolf populations Can best be defined as……….. A) Parasitism B) Mutualism C) Predation D) Commensalism If species A’s abundancy increases as Species B’s abundancy decreases, which symbiotic Relationship(s) do species A and B represent? Sketch a graph of the relationship and explain why it Cannot be mutualism. Species A is the predator if species B is the prey, if the relationship is predation. Species A could also be the host in a parasitic relationship and species B would be the parasite, since the host abundancy increases as the parasite abundancy decreases. Model taken from: http://study.com/academy/lesson/trophiclevels-in-a-food-chain-definition-lessonquiz.html LO 4.15 : The student is able to use visual representations to analyze situations or solve problems qualitatively to illustrate how interactions among living systems and with their environment result in the movement of matter and energy. • • SP 1.4 : The student can use representations and models to analyze situations or solve problems qualitatively and quantitatively. Explanation : Energy flows through an ecosystem while matter is always conserved. The movement of matter and energy through an ecosystem can be illustrated by models such as food webs and food chains. These models (such as the one below) are based on primary productivity, and therefore allow scientists to understand and make predictions about how things like global climate and atmospheric composition changes can affect primary productivity and, by extension, entire ecosystems. They also allow scientists to predict how both biotic and abiotic factors influence populations with the ecosystem. Further analysis of models may allow scientists to come to a better understanding of how certain adaptations arose to make individuals more fit to obtain and use energy and matter from the environment. Other models that may be used are the logistic growth model to illustrate how competition for resources and other factors influence population growth and energy pyramids to illustrate that each successive trophic level only has 10% of the total energy available at the previous level. M.C. Question: The food web pictured at right details the predatory relationships between Water birds, fish, and aquatic producers in the Chesapeake Bay. Only about __% of the energy produced by primary producers would be available to and Osprey in this environment. A.) 100% ` B.) 10% C.) 1% D.) .1% Learning Log/FRQ-style Question: Use the food web pictured to explain which individuals are the least prevalent in the ecosystem. Use the laws of thermodynamics in your discussion. How would removing phytoplankton from this food web affect the ecosystem? Which species would be most directly affected? What potential long-term effects could this have if the phytoplankton continue to be absent from the ecosystem? Answer Key 4.15 • • • • • A.) 100% B.) 10% C.) 1% D.) .1% Use the food web pictured to explain which individuals are the least prevalent in the ecosystem. Use the laws of thermodynamics in your discussion. How would removing phytoplankton from this food web affect the ecosystem? Which species would be most directly affected? What potential long-term effects could this have if the phytoplankton continue to be absent from the ecosystem? – The first law of thermodynamics states that energy can be neither created nor destroyed, only converted to another form. The second law of thermodynamics states that entropy always increases, which means that some energy is dissipated as heat as it changes forms. Taken together, these laws mean that energy must decrease as it moves up a food web, leaving only 10% of the previous trophic level’s total energy at the next level. Therefore, tertiary consumers have very little energy available to them, causing them to have comparatively low population sizes as opposed to other trophic levels. In this case, that means Osprey and Bald Eagles are the least prevalent species in the ecosystem. Removing phytoplankton would decrease primary productivity, decreasing the energy of the entire system. Benthic invertebrates would be most directly affected by this change, as they feed exclusively on phytoplankton. Long-term, this change could cause the extinction of benthic invertebrates in the ecosystem and a overall decline in biomass of the system due to less available energy. LO 1.27 – The student is able to describe a scientific hypothesis about the origin of life on Earth SP 1.2 - The student can describe representations and models of natural or man-made phenomena and systems in the domain Sydney Fox’s proteinoids Miller-Urey Experiment FRQ: Explain a hypothesis of the origin of life on earth. Include an experimental design that would support the hypothesis. Hypotheses concerning the origin of life on Earth are all based on information obtained in experimental investigations. The general consensus is that conditions in early-Earth environments were capable of producing complex organic molecules and cell-like structures that would be necessary for any primitive form of life to develop. Perhaps the most well known and most important of these investigations was the 1953 Miller-Urey experiment. The experiment tested an earlier hypothesis by Oparin and Haldane, which hypothesized that early Earth environments favored reactions that produced organic compounds from inorganic compounds. Miller and Urey subjected gaseous water and inorganic atmospheric molecules (like NH3, CH4, and H2) to conditions of extreme heat and pressure (simulated lightning using electrodes). Although not all at once, repetition of this experiment yielded the production of all sugars, lipids, purines, pyrimidines, all 20 amino acids: all of the monomers necessary for organic life. The next step in the development MC: The 1953 experiment resulted in of primitive life isMiller-Urey the arrangement of the organic molecules into polymers capable of replicating, what? Choose the best answer. storing, and transferring information. 1964, Dr. Sydney Fox A) Production of aminoInacids conducted an experiment in which organic monomers were B) Construction of cell-like structures placed onto hot sand/rocks/clay, resulting in the synthesis C) Synthesis of all organic monomers of proteinoids, polypeptides created abiotically. D) Synthesis of organic polymers E) Both A and B Answer Key \\ LOMC: 1.27 The 1953 Miller-Urey experiment resulted in what? Choose the best answer. A) Production of amino acids B) Construction of cell-like structures C) Synthesis of all organic monomers D) Synthesis of organic polymers E) Both A and B FRQ: Explain a hypothesis of the origin of life on earth. Include an experimental design (original or historical) that would support the hypothesis. One hypothesis that attempts to explain the origin of life on Earth takes into account the results from the Miller-Urey experiment in 1953. This experiment showed that atmospheric gasses (like ammonia, methane, hydrogen, and water vapor), when subjected to ideal conditions, undergo reactions that result in the production of the organic monomers necessary for the building of polymers and the development of life on earth. Conditions in which these reactions occur would require extreme intense heat delivered in a very quick period of time- like lightning. Early Earth conditions that favored these reactions would produce these monomers and subsequent reactions under the right conditions would yield polymers and cell-like structures capable of LO 1.13: The student is able to construct and/or justify mathematical models, diagrams or simulations that represent processes of biological evolution. SP 1.1: The student can create representations and models of natural or man-made phenomena and systems in the domain. SP 2.1: The student can justify the selection of a mathematical routine to solve problems. • Explanation: Scientists often use radioactive isotopes of molecules such as carbon-14 and their half-lives to accurately estimate the age of a fossil or rock formation. A scientist would take the half life of carbon-14, 5,730 years, then measure the amount of carbon-14 remaining in the sample to estimate how much time has passed since the death of that organism. A scientist could also measure the allelic frequency of a gene in a population or in a community of organisms to look for common descent from an ancestor- similarities in DNA sequences between species provides evidence of a common ancestor. MC Question: If when an organism dies, it has 64 grams of carbon-14, how much time would pass before there would be 4 grams of carbon-14 left, given that carbon-14 has a half-life of 5730 years? A) 5730 years B) 22920 years C) 17190 years D) 34380 years Vertebrae Free Response Question: Draw and label a cladogram for the species in this chart that indicates what order they evolved in. Bony Skeleton Four Limbs Amniotic Egg Sharks x Finned Fish x x Amphibians x x x Primates x x x x Crocodiles x x x x Shelled Egg x Answer Key LO 1.13 • Multiple Choice: the answer was B, 22920 years. • Free Response: Sharks Finned Fish Amphibians Primates Amniotic Egg Four Limbs Bony Skeleton Vertebrae Crocodiles Shelled Egg LO 3.50: The student is able to create a visual representation to describe how the vertebrate brain integrates information to produce a response. SP 1.1: The student can create representations and models of natural or man-made phenomena and systems in the domain. Explanation: Sensory neurons transmit information from sensors that detect external stimuli (light, sound, touch, heat, smell, and taste), and internal conditions (such as blood pressure, blood CO2 level, and muscle tension). This information is sent to the CNS, where interneurons will analyze the sensory input. The nerves that connect the CNS with the rest of your body is called the PNS. A response is achieved when the motor output leaves the CNS via motor neurons, which communicate with your effector or muscle cells. These combined create reflexes, the bodies automatic response to stimuli. However different regions of the vertebrate brain have different functions and pertain to things such as: vision, hearing, muscle movement, abstract thought and emotions, neurohormone production, forebrain, midbrain, and hindbrain, and your right and left cerebral hemispheres. Neurons also have: stretch, ligand, and voltage-gated ion channels, which open and close in response to stimuli; these channels are responsible for generating the signals of the nervous system. A stimulus strong enough to produce a depolarization that reaches the threshold triggers an action potential. An action potential is the signal that carries information along the axon. What helps to generate an action potential is the, Na+ and K+ ion channels that open by the depolarization of the membrane. The voltage-gated ion Na+ channels have two gates, an activation and inactivation gate. At resting potential the activation gate is closed and the inactivation gave is open. Voltage-gated K+ channels have one gate, an activation gate and at resting potential the gate is closed. Depolarization makes the activation gates of the Na+ channels open, while the K+ channel stays closed, and the rush of Na + in the membrane causes it to become positive. When the inactivation gates close, the Na+ flow stops and the activation gate for the K+ channel opens; this rush of K+ into the membrane causes the membrane to become negative. M.C. Question: In a neuron, why is a signal transmitted faster because of the Nodes of Ranvier being in-between the Schwann cells? a.) The axon surrounding the Schwann cells are insulated and the area outside of the axon, the Nodes of Ranvier, is not and therefore is capable of generating electrical signals. b.) The Nodes of Ranvier are insulated and the axon surrounding the Schwann cells are not and it is therefore capable of generating an electrical signal. c.) Both are insulated and either can generate an electrical signal, it gets transmitted faster because the Nodes are on the outside. d.) It is not faster and an electrical signal is received or transmitted just as quickly as anywhere else in the body. Learning Log/ FRQ-Style Question: Jimmy’s essay says that dendrites transmit information over longer distances than axons do, and Arnold’s essay says that Axons receive signals from long distances, which student is correct? Please explain and draw a picture to support your answer. Answer Key- LO 3.50 M.C. Question: In a neuron, why is a signal transmitted faster because of the Nodes of Ranvier being in-between the Schwann cells? a.) The axon surrounding the Schwann cells are insulated and the area outside of the axon, the Nodes of Ranvier, is not and therefore is capable of generating electrical signals. b.) The Nodes of Ranvier are insulated and the axon surrounding the Schwann cells are not and it is therefore capable of generating an electrical signal. c.) Both are insulated and either can generate an electrical signal, it gets transmitted faster because the Nodes are on the outside. d.) It is not faster and an electrical signal is received or transmitted just as quickly as anywhere else in the body. Learning Log/ FRQ-Style Question: Jimmy’s essay says that dendrites are extensions that transmit information over longer distances than axons do, and Arnold’s essay says that axons are extensions that receive signals from long distances, which student is correct? Why? Please explain and draw a picture with labels to support your answer. Both Jimmy and Arnold are incorrect. Dendrites are widely branched extensions that receive signals from other neurons. Axons are very long extensions that transmit signals to other cells, such as neurons or effector cells. Some of these cells may reach as far as your spinal cord to the muscles in your feet. The region that the axon joins the body cell is called the axon hillock. (Sample Drawing): LO 3.19 The student is ale to describe the connection between the regulation of gene expression and observed difference between individuals in a population. SP 7.1 : The student can connect phenomena and models across spatial and temporal scales. Explanation: Gene regulation includes a wide range of mechanisms that ensure variability and the correct expression of genes. Gene expression is significant in many ways such as to trigger developmental pathways, respond to environmental stimuli, or adapt to new food sources. Any step of gene expression can be regulated, from the start of transcription, to RNA processing, and to the translation of a protein. Gene regulation is essential for eukaryotes as it increases the versatility and adaptability of individuals in a population, which can be turned on or off by environmental inducers. Multiple Choice Question: All of the steps involved in expressing a gene are important to eukaryotes, which of the following processes is least important in prokaryotes (bacteria)? A.. DNA sequencing B. Transcription of DNA. C. RNA processing. D. mRNA degradation. E. mRNA translation. FRQ-style Question: Translation is the process in which ribosomes create proteins by translating codons from mRNA. List and describe three possible mutations if during this process one or more codons were translated incorrectly. Give an example of a disorder that result due to one of the listed mutations. LO 3.19 Answer key Multiple Choice Question: All of the steps involved in expressing a gene are important to eukaryotes, which of the following processes is least important in prokaryotes (bacteria)? A.. DNA sequencing B. Transcription of DNA. C. RNA processing. – because prokaryotes do not have the necessary components to process RNA like eukaryotes. D. mRNA degradation. E. mRNA translation. FRQ-style Question: Translation is the process in which ribosomes create proteins by translating codons from mRNA. List and describe three possible mutations if during this process one or more codons were translated incorrectly. Give an example of a disorder that results due to one of the listed mutations. Deletions are mutations in which a section of DNA is lost, or deleted. Insertions are mutations in which extra base pairs are inserted into a new place in the DNA. A substitution is a mutation that exchanges one base for another. A substitution mutation could change a codon to one that encodes a for different a amino acid and cause a change in the protein produced. For example, sickle cell anemia is caused by a substitution in the betahemoglobin gene, which alters a single amino acid in the protein produced.