Biology EOC Review Molecular Biology 15-19% Structure and Function of Living Organisms 18-22% Ecosystems 18-22% Evolution and Genetics 43-53% Topic: Molecular Biology • Bio 4.1 Biological Molecules • Bio 4.1.1 Structure and function of organic compounds • Bio 4.1.2 Proteins and protein synthesis • Bio 4.1.3 Enzymes • Bio 4.2 Biochemical processes and Energy use in the cell • Bio 4.2.1 Photosynthesis and cellular respiration • Bio 4.2.2 Energy is necessary for homeostasis Biological Molecules • Contain the element Carbon • 4 major macromolecules: Carbohydrates Lipids Nucleic Acids Proteins Carbohydrates • Structure/monomer/subunit/basic building block: Monosaccharide • Function: Energy source and structure • Examples: glucose-blood sugar cellulose- plant cell walls starch- storage for plants glycogen- storage in mammals’ liver • Tests: Glucose-Benedict’s solution (when heated turns orange/green) Starch- Iodine solution (turns blue black color) • Ends in –ose: sugar Lipids • Structure: 3 fatty acids and 1 glycerol • Function: long term energy storage, protection, and insulation • Examples: fats, phospholipids and steroids (cell membrane) • Test: brown paper Lipid vs.. Nucleic Acids • Monomer/subunit/basic building block: nucleotide (sugar, phosphate group, and nitrogen base) • Function: store genetic information • Examples: DNA and RNA Proteins • Monomer/subunit/basic building blockamino acids (20 different amino acids) ** all have same basic structure, including an amino group and carboxyl group. However, all have different “R” group which determines shape which determines function. ** • Function- building and repairing cells, communication, transport, gene expression, and regulation • Test- Biurets • Examples: insulin-regulates blood sugar enzymes-speed up chemical reactions hemoglobin- carries oxygen in blood • • • • • Enzymes “organic catalysts” Specific; “lock and key method” Protein Reusable Affected by temperature and pH; shape is altered in high temperature and extreme pH • Speed up chemical reaction by lowering the activation energy • End in -ase Photosynthesis-”light making” • The way plants make their own food (autotrophs) • Reactants: Water, Carbon Dioxide, and Sun • Products: Glucose and Oxygen • Sun+H2O+CO2C6H12O6+O2 • Occurs in the chloroplast • Sun: Radiant energy • Producers/Consumers: Chemical energy • Final: Heat energy Photosynthesis (continued…) • Plants take in water through their roots and take in carbon dioxide through holes in their leaves called STOMATA Aerobic/Cellular Respiration • With Oxygen • Used to release energy (ATP) for cellular use • Reactants: Glucose and oxygen • Products: Water and Carbon Dioxide • C6H12O6+O2H2O+CO2 • Occurs in the mitochondria • Inverse of photosynthesis • 36-38 ATP; very efficient • “aerobics class like ZUMBA” Anaerobic Respiration aka Fermentation • No Oxygen • Used to release energy, but not as efficient as aerobic respiration (less ATP) • Products include CO2 and lactic acid or alcohol • Two Types: • Alcoholic Fermentation (yeast/beer) • Lactic Acid Fermentation (muscle fatigue/cramps) ATP Energy Storing Molecule • Maintain homeostasis • Can be used for quick energy by the cell • Energy is stored in the phosphate bonds • Break bonds to release energy • Think about “glow stick” break to activate glowing Questions For Standard 4 1. Glucose is blood sugar and insulin helps to regulate it. From which organic compounds do glucose and insulin belong? 2. Plants and animals must store carbohydrates to use for later. Which carbohydrate is used for storage in plants? Which carbohydrate is used for storage in animals? 3. Which carbohydrate is found in plant cell walls and is indigestible for mammals and other animals? 4. Which organic compound would become your energy source if you were without food for a long period of time? 5. The functional units of DNA are ___________________. 6. What makes the 20 different amino acids different? How does this contribute to their function? 7. How do enzymes speed up reactions? 8. How many substrates can one enzyme fit with? What type of analogy can be used to explain this? 9. What happens to the enzymes in your body if your temperature is too high 10. Which organelle is the site of photosynthesis? Questions For Standard 4 11. What type of organisms can use photosynthesis? 12. Which organelle is the site of respiration? 13. What type of organisms can use respiration? 14. Which two compounds are created at the end of photosynthesis and are used at the beginning of aerobic respiration? 15. Which anaerobic process is responsible for producing ATP in the absence of oxygen? 16. Which compounds builds up in your muscles after strenuous exercise and causes them to feel sore? 17. Which compound is produced by plants and yeast during anaerobic respiration? 18. Why is aerobic respiration considered the ideal method of producing ATP? 19. Why is ATP necessary for all living things? Topic: Structure and Functions of Living Organisms • Bio 1.1 Structures and functions of cells and their organelles • Bio 1.1.1 Eukaryotic cells’ organelles (nucleus, plasma membrane, cell wall, mitochondria, vacuoles, chloroplasts, and ribosomes) • Bio 1.1.2 Prokaryotic vs. Eukaryotic cells • Bio 1.1.3 Instructions in DNA lead to cell differentiation and result in cell specialization • Bio 1.2 Cell as a Living System • Bio 1.2.1 Homeostasis • Bio 1.2.2 Cell Cycle (Interphase, Mitosis, and Cytokinesis • Bio 1.2.3 Specific Cell Adaptations Prokaryotes Cells • Simple, no membrane bound organelles (less complex) • No Nucleus • Bacteria only (unicellular) • Smaller than eukaryotes • Includes: circular DNA strands (Plasmids), ribosomes, and plasma membrane Eukaryotes • Membrane bound organelles • Plants and Animals • True nucleus Prokaryote and Eukaryote Nucleus/Nucleolus • “Control Center” • Contains chromosomes • Genetic Information Nucleolus: Ribosomal Synthesis (make ribosomes) Mitochondria • Energy, energy, energy • “Powerhouse” of cell • Produces energy in the form of ATP • Site of Aerobic/cellular respiration • Cristae (folds) increase surface area to increase energy production during cellular respiration Chloroplast • Site of photosynthesis: the way plants make their foodautotrophs • Use sunlight, water, and carbon dioxide to produce oxygen and glucose • Plant cells ONLY • Contains the green pigment chlorophyll Vacuole • Storage of excess materials • Plant cells usually contain one large vacuole Ribosomes • Proteins are synthesized • Found in both prokaryotes and eukaryotes Plasma Membrane aka: Cell Membrane • Surrounds the cell • Regulates what enters/leaves the cell (bouncer/security guard) • Helps maintain homeostasis (stable internal balance) • Made of phospholipids with embedded proteins • Gatekeeper Cell Wall • Plant cells ONLY • Surrounds cell and provides support and protection • Made of cellulosea carbohydrate (sugar) Eukaryotes Plant • Cell wall • Chloroplast • Large central vacuole Animal Interaction of Organelles DNA codes for proteins which are assembled by the ribosomes and used as enzymes for energy production at the mitochondria Specialized Cells cells develop to perform specific functions; structure determines function Regulated by genes Formation of Multicellular Organisms • Begin as undifferentiated masses of cells • DNA variation & gene activity determines differentiation of cells • Only specific parts of DNA activated • All cells contain same DNA in organism • Genetic instructions influenced by cell’s environment and past history Cell to Cell Communication • Chemical Signals (hormones) can be sent from one cell to another • Receptor proteins on the plasma membrane receive the signal Stem Cells Adult and Embryonic • Unspecialized cells that continually reproduce themselves and have under appropriate conditions the ability to differentiate into one or more types of specialized cells • Embryonic: not yet differentiated into various cell types • Example of adult stem cells: bone marrow Plasma Membrane • Buffers to regulate cell pH and cells can respond to maintain temperature, glucose levels, and water balance in organisms • Remove toxins, move the body to avoid danger, find food, water, or a mate Diffusion • Form of passive transport (NO ENERGY NEEDED and Random) across a membrane • high concentration to low concentration Osmosis • • • • Diffusion of water Passive transport NO ENERGY With concentration gradient • High to low concentration • Example: Food color in water; riding bike down hill Active Transport • Particles moving against the concentration gradient which REQUIRES ENERGY (ATP) • Low concentration to high concentration • Example: Riding back up the hill requires energy • Energy needed to maintain homeostasis within organisms • Example: rid cell of toxins; movement to avoid danger; movement to find food, water, mates, etc.. • Iso: “same”/”equal” Hypo: Swell • Movement of water is the same Think “Hippo” in and out of a cell Water moves Solutions into cell Hyper: Shrink Water moves out of the cell -Salt water Solutions • Isotonic: concentration of solutes in the cell=concentration of solutes outside the cell • Hypertonic=water is greater inside the cell than outside the cell; solutes outside the cell are greater than solutes inside the cell; “shrink” • Hypotonic=solutes outside the cell are less than solutes inside the cell; water moves from area of high (outside cell) to low concentration (inside cell) Sodium Potassium Pump Cell Cycle • Interphase: cell spends the most time (G1 (growth), S (DNA and chromosomes replicates/copy), G2 (check for errors) • Mitosis: makes body cells; asexual; parent and offspring identical • Cytokinesis: cytoplasm divides and 2 new cells formed Phases of Mitosis (Asexual Reproduction) “PMAT” Prophase: “preparation” (chromosomes visible, nucleus disappears) Metaphase: “middle” (chromosomes line up in the middle) Anaphase: “apart” (sister chromatids separate) Telophase: “two” (nuclei reappear and cleavage furrow forms) Cytokinesis: “cytoplasm divides” Results in 2 diploid identical cells (parents identical to daughter cells) Binary Fission Specific Cell Adaptations Amoeba: -contractile vacuole (excess water) -pseudopods (false feet) Paramecium: -cilia: short, hair like Structures used for Movement/locomotion Euglena: -flagella (long, whip like); movement -eyespot: light sensitive (photo taxis) Questions for Standard 1 1. What quality of the nucleus allows it to be in charge of all cell processes? 2. Which cell organelle is flexible due to its arrangement of phospholipids? 3. What type of organisms have cell walls? 4. What is the function of the folds within the mitochondria? 5. What three things regarding cell organelles are different between plant and animal cells? 6. Do prokaryotes have ribosomes? Why? 7. What is the only living thing on Earth that is made of a prokaryote cell? 8. What is the name of the circular DNA that prokaryotes have? 9. If all cells have the same DNA, why are they not the same? 10. Why does the body need different types of cells? Give some examples of different cells. 11. What are cells called that do not have a specific job yet? 12. Define homeostasis? 13. What is the difference between diffusion and osmosis? 14. If a cell is placed in salt water, what will happen to the cell? 15. If a cell is placed in pure water, what will happen to the cell? 16. What is necessary for the process of active transport to occur? 17. In which part of the cell cycle are chromosomes copied? 18. In which part of the cell cycle do cells spend the most time? 19. What phase/term refers to division of the nucleus and chromosomes? 20.When are two new cells formed? 21. What is the function of the contractile vacuole? 22.What type of organisms have an eyespot? 23.Describe the cilia, flagella, and pseudopods in terms of movement for the Topic: Ecosystems • Bio 2.1 Interdependence of Living Organisms • Bio 2.1.1 Water, Carbon, Nitrogen, and Oxygen Cycles • Bio 2.1.2 Behavioral, Structural, and Reproductive Adaptations • Bio 2.1.3 Interactions among Organisms • Bio 2.1.4 Ecosystems • Bio 2.2 Human Impact • Bio 2.2.1 Human Activities • Bio 2.2.2 Sustainability Ecology • Collection of abiotic (nonlivng) and biotic (living) factors in an area • Together they influence growth, survival, and productivity of an organism Symbiotic Relationships • Symbiosis: close and permanent relationship between members of different species • Types: – Mutualism (+,+) – Both Benefit Example: bees and flowers both benefit from pollination – Parasitism (+,-) – 1 Benefits and 1 Harmed Example: Human & Tapeworm; dog &tick; mistletoeplant that grows within trees and benefits by absorbing nutrients from them and the tree is harmed by being deprived of nutrients Predation • Predator: hunter; eats prey • Prey: being hunted or eaten • Evolve in response to one another • Help maintain stability within an ecosystem Predator-Prey Relationship • Predators eat prey and maintain the health of prey populations. • The predators eat old, sick, weak, and injured in prey populations. • As the population of the prey increases, the predator population will increase. • As the predators increase, the number of prey decrease. Carbon Cycle Carbon cycles through an ecosystem through: - Atmosphere: CO2 - Photosynthesis: CO2 enters plants and plants use to make glucose - Decomposition: Plants die, buried as fossil fuels - Humans burn fossil fuels and CO2 enters atmosphere - Climate change: CO2 is a greenhouse gas; traps heat in atmosphere - Cellular Respiration: Animals eat plants and carbon passes to consumers and then back into the atmosphere through respiration; Humans breathe out CO2 and breathe in O2 Nitrogen Cycle • Nitrogen necessary because it is a key component of amino acids (proteins) and nucleic acids (DNA) • 78% of air is nitrogen (unusable form for plants and animals) • Plants receive nitrogen from the soil. • Nitrogen fixing bacteria converts nitrogen into a usable form (ammonia) • Nitrogen is broken down and returned to the atmosphere by bacteria, fungi, and other microorganisms Food Chain-shows the flow of energy from one organism to another organism Food Web • System of interlocking and independent food chains that shows all possible feeding relationships between organisms • Plants:producers/autot rophs • Animals:consumers/het erotrophs • Energy needed by all organisms to maintain homeostasis • Plants and animals use energy to perform life functions • Ultimate source of energySUN (radiant energy) • Radiant energy is converted to chemical energy • Chemical energy converted to heat energy • Steps in a food chain/web • Energy passes from one organism to another • About 10% of the energy at one level passes to the next and other 90% lost as heat Energy Pyramids Life Functions • Transport-how organisms get what they need to their cells • Vascular Tissues: Xylem (water) and phloem (sugar/glucose) example: tree • Non-vascular (example: moss) do not have a xylem or phloem (no true roots and live in moist areas) and are in close contact with the water and will never grow more than a few inches off the ground • Insects, amphibians, and mammals-circulatory systems with blood vessels to transport needed materials Vascular Plants • Xylem-transports water (up from roots to leaves) • Phloem-transports sugar (down from leaves to roots) Life Functions • Excretion-how organisms get rid of waste • Amphibians and mammalsurinary system with kidneys to remove nitrogen; kidneys: regulate water balance, salt, and pH • Plants-holes in their leaves called stomata that are used to excrete wastes such as oxygen produced during photosynthesis • Plants lose water from stomata during transpiration Life Functions • Respiration- how organisms take in and release gases • All living things respire to produce ATP using oxygen within the mitochondria of cells • Plants take in and release gases through the stomata on their leaves • Amphibians and mammals have lungs used for taking in oxygen. • Single celled organisms such as bacteria and protist use diffusion for taking in gases Life Functions • Nutrition-how organisms get nutrition/break down and absorb foods • Autotrophs/producers: make their own food through photosynthesis (ex: plants) • Heterotrophs/consumers: get food from different source (ex: humans) • Animals have digestive system to break down food • Mammals-different teeth shapes to eat certain foods • Birds- different beak shapes to eat certain foods Life Functions • Growth/Development/Reprod uction: Some plants grow from seeds like plants with flowers (angiosperms) and cones (gymnosperms). • Some plants grow from spores like moss and ferns. • Spores do not have to be fertilized. • Seed plants use pollen and ovules (eggs) during sexual reproduction. Pollen-male structure and ovule- female structure. • Methods of pollinationinsects, birds, mammals, wind, etc.. • Life Functions Growth/Development/Reproduction: Insects/amphibians go through metamorphosis (adult and young do not compete for food) • Reproductive methods: Animals in the water (fish/amphibians) use external fertilization; large # of eggs fertilized at 1 time Animals such as mammals have internal fertilization 3 types: monotremes- lay eggs ex: platypus marsupials- partial development in a pouch ex: kangaroo placental- complete development inside uterus Fertilized egg=zygote Innate Behavior “Instincts” • • • • • • • • Behaviors an animal is born with Includes Suckling (attachment for feeding) Migration (leave north to go south for warmer climate) Hibernation (during winter months) Estivation (dormancy during hot period) Photo taxis (movement toward/away from light) Chemo taxis (movement toward/away from chemical stimulus) Social Behavior • Communication between individuals of the same species • Can be courtship (ex: male peacock as he spreads his tail feathers to attract a mate) • territorial (ex: Male Betta fish) • chemical/pheromones to communicate things such as the location of food (ex: bees, ants, termites) Learned Behaviors • Habituation-learned by repetition or “habit” and there is a decrease in response to stimulus (ex: city horses) • Imprinting-animal forms a social attachment to another animal at an early, critical time in their life (ex: baby duck will follow the first animal that it sees upon hatching) • Classical conditioning-animal associates one type of behavior with a reward (ex: Pavlov’s dog) • Trial and error-trying various responses until one is rewarded Carrying Capacity/Logistic Growth “S” shaped • • Maximum number of individuals that an ecosystem can support-carrying capacity • Limiting factors (cause population to decrease): – Food availability – Competition – Disease – Predation – Natural Disasters – Climate – Territory (space) Human Population/Exponential Growth • Growth= birth rate-death rate • Current human population has no limiting factors • the larger the population, the faster it grows • Unlimited resources (food, shelter, mates, land, etc.) • “J” shaped • Human population increases, resources such as fossil fuels are consumed at an increasing rate Effect of Disease on Ecosystem • • • • AIDS Influenza Tuberculosis Dutch Elm Disease • Psfiesteria • Ecosystems with lots of variation (genetic diversity and diversity of species) are more resilient to the impacts of diseases because: greater possibility that some species have evolved resistance if a species is lost there will be another species to fill the niche of an extinct species Human Impacts Human population increases, use of fossil fuels increases More consumption=more waste=more pollution Positive • • • • • Reforestation Cover Rotation (plant different crops each year to replenish nutrients/decrease mineral loss in soil) Recycling-preserve natural resources Sustainable practice (Reduce, reuse, and recycle) Organic Negative • • • • • • Acid Rain Deforestation (increase CO2 & decrease O2) Habitat Destruction Invasive Species Ozone depletion from the release of CFCs Remove trees-increase erosion-leads to water runoff and decrease of habitats North Carolina Ecosystems Impact • Acid rain effects in mountains (rain=acidic and killing trees in mountains) • Beach erosion (rise in global sea levels due to global warming and melting of glaciers • Urban development in the Piedmont leading to habitat destruction &water runoff • Waste lagoons on hog farms (untreated manure into local rivers and lakes contaminating waters and killing aquatic species • Kudzu as an invasive plant (overtakes and kills native species) NON-NATIVE SPECIES • Plants, animals, or other organisms that are are introduced to a given area outside their original range and cause harm in their new home; • NO natural enemies • NO predators Global Warming • Increase in the average temperature of the earth • Caused by the release of too much CO2 into the atmosphere which amplifies the greenhouse effect • Major cause: Burning of fossil fuels, volcanic eruptions Bioaccumulation • An increase in environmental toxins as you move up a food chain • Organisms higher on the food chain eat more and the more an organism eats the more toxins that they ingest • Ex. DDT and birds of prey Questions for Standard 2 1. How does carbon enter plants? 2. List two ways that consumers return carbon to the atmosphere? 3. What process is explained by carbon dioxide holding heat in the atmosphere? 4. Why is nitrogen important to humans? 5. What happens to energy as it moves up the food chain? Why? 6. What two structures do most plants use for transport of materials? What is the difference between the two? 7. What are the structures within plants’ leaves that allow gas exchange and excretion of wastes? 8. What process is described by loss of water from a plants leaves? 9. In addition to gas exchange, what is the overall goal of respiration? 10. How do plants obtain nutrients? 11. What is the advantage of a spore? Questions for Standard 2 12. What is the advantage of external fertilization? 13. Contrast monotremes, marsupials, and placental mammals. 14. How are estivation and hibernation similar? How are they different? 15. What social behavior is displayed by Betta fish? 16. Give an example of each of the following: a. communication using pheromones b. courtship behavior c. photo taxis 17. After moving to his new home, a man is startled several times per day due to close proximity to a passing train. According to habituation, what should eventually happen? 18. Why might imprinting be necessary for survival of an animal? 19. Which behavior is described by associating a certain behavior with a reward, such as with Pavlov’s dog? 20. Contrast mutualism and parasitism. Questions for Standard 2 21. What happens to a prey population if the predator population decreases? Why? 22. What are limiting factors? Give two examples. 23. What happens when a population reaches carrying capacity? 24. What two things have increased along with increasing human population. 25. How has acid rain affected the mountains of NC? 26. Why are hog farms damaging to NC ecosystems? 27. Why is Kudzu so bad? 28. Why do pesticides kill animals such as eagles? 29. What can you do to have good Stewardship (help preserve the environment for the future)? • • • • • • • • • • • • • • • • • • • Topic: Evolution and Genetics Bio 3.1 Structure and Function of DNA Bio 3.1.1 DNA-double stranded Bio 3.1.2 DNA and RNA code for proteins and determine traits Bio 3.1.3 Mutations Bio 3.2 Expression of Genetic Traits Bio 3.2.1 Meiosis/Sexual Reproduction/Genetic Variation Bio 3.2.2 Inheritance Patterns Bio 3.2.3 Environmental Factors Bio 3.3 DNA Technology Bio 3.3.1 DNA Comparison and Identification Bio 3.3.2 Transgenic Organisms Bio 3.3.3 Ethical Issues Bio 3.4 Theory of Evolution by Natural Selection Bio 3.4.1 Evidence for Evolution Bio 3.4.2 Natural Selection Bio 3.4.3 Disease Agents Bio 3.5 Classification Systems Bio 3.5.1 Historical and Modern Systems Bio 3.5.2 Evolutionary Relationships DNA / RNA • Monomer/Subunit/Basic Building Block: Nucleic Acids • Store genetic information • Made of a chain of nucleotides • Nucleotide: sugar phosphate nitrogen base DNA / RNA DNA • Double stranded • Double Helix • “Twisted Ladder” (backbone: sugar and phosphate) • “Rungs of ladder” (inside: complementary base pairs Adenine to Thymine and Cytosine to Guanine) • Sugar is Deoxyribose • Found in nucleus RNA • Single stranded • Four base pairs: AUCG • Sugar is Ribose Sequence of DNA determines which proteins are made. Proteins are important for building things within the body and in chemical reactions (enzymes). Base Pair Rule • In DNA, Adenine always pairs with Thymine, and Guanine always pairs with Cytosine (weak hydrogen bonds) • In RNA, NO THYMINE, NO THYMINE, Adenine always pairs with Uracil and Guanine always pairs with Cytosine (weak hydrogen bonds) Replication • Making of an identical strand of DNA • Occurs during “S” phase (synthesis) of cell cycle • Daughter cells have an exact copy of parental DNA • “semi” conservative 1 “old” strand (original) and 1 “new” strand Central Dogma Protein Synthesis: making of proteins Transcription (nucleus) produces an RNA copy of DNA • DNAmRNA • mRNA travels from the nucleus to ribosomes • Occurs in nucleus • Complementary mRNA strand is produced from a segment of DNA • 3 RNA: -mRNA(messenger)carries blueprint -tRNA (transfer)gathers amino acids -rRNA (ribosomal)assembles proteins Translation (ribosomes) • rRNA reads the message and helps assemble protein • tRNA bring amino acids to the ribosome according to the mRNA codons • Amino acids are linked together by rRNA using peptide bonds Proteins • Structural-forming a part of the cell membrane; build things ex: keratin • Functionalhormones, enzymes, or chemicals; cellular processes Codon • Sequence of three mRNA nucleotides that code for an amino acid Mutations • Change in DNA sequence • Addition/Deletion: base added or deleted; each codon is shifted and the entire amino acid sequence/protein is altered and will most likely be nonfunctional • Substitutions: base or codon switched with another; alter 1 amino acid and will result in slightly altered amino acid ex: Sickle Cell • NOT always harmful • Caused by- Randomness/spontaneous or Radiation and/or chemical exposure (environmental influence) • Mutations in sex cells (egg or sperm) can be inherited Sickle Cell Mutation Sickle Cell:recessive genetic disorder Resistant to malaria Mitosis/Body Cells • Cell division • Produces two identical diploid (2n) daughter cells • Occurs in body cells to grow and repair • Asexual reproduction • Cloning, binary fission, budding • 2 identical diploid (2n) daughter cells • No genetic variation Cancer • Error in cell growth with causes uncontrolled cell growth • Has environment and genetic variables Mitosis vs. Meiosis • Normal humans 46 chromosomes in body cells 23 chromosomes in sex cells (egg or sperm) •First 22 pairs-autosomes •23rd pair – sex chromosomes •Females XX •Males XY • Cell division • Produces four different haploid (n) daughter cells (gametes) • Occurs in sex cells (gametes) egg or sperm • Sexual reproduction • 4 genetically different haploid (n) cells • Genetic variation/diversity • Independent assortment • Fertilization-egg+sperm • 2 cell divisions Meiosis Crossing Over occurs during Meiosis • Homologous chromosomes exchange parts of their DNA • Creates variation in gametes Nondisjunction • Homologous chromosomes fail to separate during meiosis • Can lead to • Down Syndrome (Trisomy 21) extra chromosome on 21st pair Asexual vs.. Sexual Reproduction Asexual • One parent • Identical offspring • Variation only thru mutations • Examples: budding, fragmentation, fission, cloning Sexual • Two parents • Offspring different from parents • More variation • Fertilization (fusion of gametes---------n+n=2n ); zygote (2n) Inheritance • Traits are specific characteristics inherited from parents • Genes are the factors that determine traits • The different forms of a gene are called alleles Dominant/Recessive Alleles • Dominant alleles are expressed, if present, and recessive are hidden • Dominant alleles mask recessive alleles • Capital Letters ex: HH (homozygous dominant) or Hh (heterozygous dominant) • Lowercase Letters ex: hh (homozygous recessive) Genotype actual alleles an individual has for a trait genetic makeup Homozygous (same) • Both alleles are the same • Ex. BB or bb Heterozygous (different) • Both alleles are different • Ex. Bb Genotypic Ratio: 1BB:2Bb:1bb Phenotype • The actual characteristic displayed by the individual (ex. brown eyes, Hemophiliac, tall) • Physical trait; what it looks like Phenotypic Ratio: 3 purple:1 white Incomplete Dominance “BLENDING” • Heterozygote shows a blending of the dominant and recessive phenotypes • Example: Red + white = Pink flowers Codominance “BOTH” • Heterozygote expresses both traits • Ex. Checkered Chicken Polygenic Traits “many” • Traits are controlled by more than one gene • Many possible phenotypes • Ex. skin color, hair color, and eye color Multiple Alleles • More than two alleles • for a trait (an individual still only inherits two) • Ex. Blood Type type A = IAIA or IAi type B = IBIB or IBi type AB= IAIB type O = ii (recessive) Blood Typing Problems • Type AB (mom) and Heterozygous Type B (Dad) 25% Type AB 25% Type A 50% Type B(BB/BO) Blood Typing Practice Square and Blood Type Percentages 1. Homozygous Type A (mom) and Type AB (dad) 2. Type O (mom) and Homozygous Type B (dad) Sex Linked Traits • Sex Chromosomes (23rd pair) – Female = XX – Male = XY • Sex linked traits are carried on the X chromosome only • More common in males (only have 1 X to inherit recessive allele) • Females would have to inherit 2 recessive alleles on X’s • Ex. Hemophilia, colorblindness • Recessive allele (affected) • similar to a family tree • Shows how a trait or disease is passed in a family Pedigree Male=square Female=circle Shaded=affected Strike Through=death If 2 parents (heterozygous dominant) have a trait, but their son or daughter does not, the trait is dominant and the unaffected offspring will be recessive. If 2 parents do not have a trait, but their son or daughter does, the trait is recessive. The parents must be heterozygous dominant and affected offspring will be recessive. Karyotype • Chart of someone's chromosomes (23 pairs) • From largest to smallest • Can determine chromosomal disorders and gender Down Syndrome Extra chromosome at 21st pair Environmental Factors on Genes Genetic Condition Prevention Lung Cancer No smoking Skin Cancer Limited sun exposure, vitamin D, folic acid Type 2 Diabetes Diet low in sugar and regular exercise PKU Testing at birth; diet free of phenylalanine (dairy products) Heart disease Diet low in fat and regular exercise Malaria Sickle Cell Anemia (resistant) Human Genome Project • Sequencing of human DNA • 13 year project • Being used to develop gene therapies • Determine whether individuals carry genes for genetic conditions • Ex: SCID and Cystic Fibrosis Gel Electrophoresis • Technique used to separate molecules (DNA or proteins) based on size • Use restriction enzymes to cut DNA into fragments • Smaller fragments travel quicker and farther in the gel than do larger fragments and will be found at the bottom of the • “DNA fingerprinting” • Identify individuals, identify and catalogue endangered species Recombinant DNA • Cell with DNA from another source • Example: Bacteria used to produce human insulin • Step 1: Gene for human insulin isolated from human DNA • Step 2: Gene is cut and inserted into the bacterial chromosome (plasmid) • Step 3: Bacteria must then take in the plasmid so that it can use the insulin gene to make the insulin protein Bacterial Transformation • Insertion of a gene into bacterial plasmid • Getting bacteria to take in the plasmid • Selecting the transformed bacteria • Producing the product Transgenic Organism • Contain DNA fragments from other organisms • Agricultural: crops resistant to certain crops • Bacteria: human insulin (diabetes) Origin of Life Beginning • Atmosphere was hot • No oxygen • First “cells” anaerobic prokaryotes, then photosynthetic organisms, then eukaryotic cells, then multicellular organisms Anaerobic prokaryotes > Photosynthetic prokaryotes > Eukaryotes > Multicellular Endosymbiosis Theory • Eukaryotic cells evolved from prokaryotes • Early prokaryotes engulfed other prokaryotes and developed symbiotic relationships • Evidence includes mitochondria and chloroplast have prokaryotic type DNA and double membrane bound organelles Abiogenesis • Living from non-living or spontaneous generation • Disproved by Redi and Pasteur’s experiments Biogenesis • Living from Living Natural Selection “survival of the fittest” • Theory of Evolution • Fit organisms survive, reproduce, and pass on traits • Charles Darwin • Lead to new species • Acts on phenotypes Requirements: • Variation • Competition Peppered Moths 19th century Industrialization & coal fires led to air pollution Killed lichens and blackened tree trunks White moths were more obvious to predators Black moths were camouflaged and safe from predators and more likely to reproduce and produce favorable offspring 20th century reduce air pollution tree trunks became cleaner White colored moth was camouflaged and the dark colored moth was more noticeable. 1. 2. 3. 4. Stages of Natural Selection Overproduction: more offspring are born than can survive Genetic Variation: individuals in a population are varied Struggle to Survive/Competition: only some individuals in a population survive Selection/successful reproduction: individuals that are well adapted to their environment are more likely to survive and reproduce Adaptations • Beneficial trait that increases survival • For Example, – Beaks that make it easier to eat insects – Bright flowers to attract pollinators – Vascular tissue in plants to adapt to life on land • Homologous Structure: same tissue, different organism, different function • Vestigial Structure: once had a function, no longer has a function • Example: human appendix, whale’s hipbones Speciation • Emergence of a new species • Members of the same species (breed and produce fertile offspring) are separated by physical feature such as a river, volcanic eruption, or earthquake may evolve separately in different environments and lead to a new species Antibiotic and Pesticide Resistance • Populations will eventually become resistant to pesticides and antibiotics with overuse Natural Selection and Antibiotic Resistance Evidence for Evolution • • • • Fossil Record (bones) Biochemical Similarities (DNA) Shared anatomical structures Embryology Fossil Record • Older fossils can be compared to more recent ones to show how species evolved • Oldest fossilsbottom • Newest fossilstop • Sedimentary rocks Biochemical Similarities (DNA) • DNA provides the best evidence because it can tell us exactly how closely related some organisms are • DNA codes to make Proteins Anatomical Structures • Homologous Structuresame tissue, different organisms, different function • Common ancestor • Analogous structuresdifferent tissue, different organisms, same function • No common ancestor Coevolution • Two organisms evolve in response to each other Ex. Flowering plants and their pollinators Binomial Nomenclature • • • • Two word naming system Scientific name Uses Genus and Species names Ex. Dogs: Canis familiaris Dichotomous Keys • Multi-step tool used to identify organisms • Paired set of questions with two choices CLASSIFICATION- based on evolutionary relationships • Domain: broadest category • Species: most specific category (must be able to interbreed and produce fertile offspring) Levels of Classification “most complex” (domain) to “most specific” (species) Did King Philip Come Over For Good Spaghetti Cladogram Outgroup organism and shows relationships based on shared derived traits Phylogenetic Tree • Shows the evolutionary relationships of several species branching from a common ancestor • The closer the species are to each other on the tree, the more closely related they are • Common ancestor----bottom Viruses • Not considered living things • Pathogens that can mutate to resist vaccines • Ex. HIV, Influenza, Smallpox Immune Response B-cells T-cells • Fight antigens in body fluids • B-cells make antibodies • Make memory cells after exposure to antigen • Fight pathogens inside living cells • May help Bcells to make antibodies • Make memory cells after exposure to pathogen Immunity Passive Immunity • Antibodies are introduced into the body • Short term • Such as mother transfers antibodies to infant through breast feeding Active Immunity • Antibodies are acquired when an immune response is activated in the body • Long term • Ex. Vaccines are weak/dead antigens that are introduced to the body Parasites • Lives on or within a host • Benefits while causing harm to the host • Ex. Plasmodium causes malaria (genetic influencecarriers of sickle cell are resistant to malaria) Toxins • Chemical that causes harm to the body • Can be man-made or produced by microorganisms • Ex. Mercury and Lead Questions for Standard 3 1. What makes up the sides of the DNA ladder? 2. What is found in between the bases of DNA? 3. What does the sequence of DNA determine? 4. What is transcription and where does it occur? 5. What is being translated into amino acids? 6. Which nucleic acid brings amino acids to the ribosomes? 7. Describe the two types of proteins. 8. What type of cells are created through meiosis? How is the number of chromosomes in these cells different from the original cell? 9. What are two ways do the new cells of mitosis compare to the new cells of meiosis? 10. What are the ways that meiosis creates variation in offspring? 11. What is the difference between heterozygous and homozygous? 12. Which of these would be a genotype? GG or green? 13. What is the difference between codominance and incomplete dominance? How are they alike? 14. Why are males more likely than females to inherit sex-linked traits? 15. What two things can be found from a karyotype? Which chromosomes represent the 23rd pair? 16. If two parents have a trait and their son or daughter do not, what is the genotype of the parents? Is this a dominant or recessive trait? 17. How can PKU be prevented? 18. Having the condition of sickle cell anemia may prevent you from contracting which other condition? 19. What are restriction enzymes used for? 20. Which fragments travel farther in gel electrophoresis? 21. Give one medical uses of transgenic bacteria. 22. What are some evidences of evolution? 23. What is geographic isolation?