DNA Replication Transcription and Translation Genes are Made of DNA • Scientist discovered that DNA was a chemical inside the nucleus Oswald Avery 1944 Frederick Griffith 1928 Genes are Made of DNA • Further experiments by: o Alfred Hershey o Martha Chase • Worked with viruses to support Avery’s work Genes are Made of DNA Virus – a package of nucleic acid wrapped in protein • Not made of cells • They can only reproduce by infecting a living cell Bacteriophage – a virus that infects bacteria The Double Helix • At more or less the same time scientist: o James Watson o Francis Crick • Using Franklin’s X-ray crystalography to provide clues to their discovery Double Helix – Model created by Watson and Crick; in which two strands of nucleotides wound about each other • Sugar phosphate backbones on the outside; Nitrogenous base on the inside. Remember the monomer of DNA is a nucleotide What is DNA and RNA?? • DNA and RNA are a class of macromolecules called Nucleic Acids • DNA (Deoxyribonucleic Acid) o where genetic information is stored o Composed of 1. Deoxyribose sugar 2. Phosphate group 3. Nucleotide base o Double stranded • RNA (Ribonucleic Acid)- involved in protein synthesis o Composed of the sugar ribose, a phosphate group, and nitrogenous base o Has the nitrogen base uracil in place of thiamine DNA - Nucleotides • Each DNA and RNA monomer has three parts: DNA - Nucleotides Nitrogenous Base – 4 nucleotides found in DNA differ only in their nitrogenous bases Pyrimidines: single ring structure • Thymine (T) • Cytosine (C) Purines: double ring structure • Adenine (A) • Guanine (G) DNA structure and bonding • DNA is composed of o the sugar-phosphate “backbone” o The nitrogenous bases “rungs” • The sugar-phosphate molecules are joined by covalent bonds • The nitrogen bases are joined by hydrogen bonds Complementary Base Pairs Pyrimidines always pair with purines Base Pairing Rules A with T C with G • AT CG (Coral Gables) Chargaff’s rule If…. • Adenine (A) only pairs with Thiamine (T) • Guanine (G) only pairs with Cytosine (C) Then for every DNA molecule, • the amount of A=T • The amount of C=G • C% + G% = 100%- (A% + T%) Practice Problem A molecule of DNA is composed of 20% Adenine. • What % is Thiamine? • What % is Guanine? • What percent is Cytosine? • A= 20% • A=T; T=20% • A+T= 40% • (C% + G%) = 100% - 40%= 60% • C = G, then o C = ½(60%)=30% o G = ½(60%)=30% You Practice • Given the following problems, figure out the % of the rest of the nucleotides 1. 10 % guanine 2. 15% thiamine 3. 30% cytosine You Do: Draw a DNA Molecule • Draw a molecule of DNA • Make sure to color code o Phosphate Group o Deoxyribose sugar o Nitrogenous Bases • • • • Adenine Guanine Thymine Cytosine • Show which bonds are hydrogen bonds and which are covalent bonds DNA Replication • When a cell divides; a complete set of genetic instructions are copied for each cell • Genetic material uses the template principle to make more DNA • Watson and Crick’s model for DNA allowed for the hypothesis of specific base pairing o A–T oC-G o If you know one strand of DNA you can determine the sequence on the other What is the essential vocabulary? Replication – the process of DNA duplication. Replication fork – Site where DNA strands separate and replication occurs. Enzyme – a protein that facilitates a specific chemical reaction in the body. Leading strand – DNA strand that forms as a continuous strand during DNA replication. Lagging strand – DNA strand that forms as a series of short segments, called Okazaki fragments, which are then connected together. What is DNA replication? During DNA replication, the DNA molecule produces two new complementary strands. Each strand of DNA serves as a template for the new strand. Described as semiconservative because each DNA molecule has one new strand and one original strand. New nucleotides are always added in the 3’ to 5’ direction How does DNA replication work? A very complex process requiring the assistance of several enzymes and regulatory molecules. DNA helicases unwind parent strand. Primase initiates replication by adding a short RNA fragment called a primer to the old strands DNA polymerases join individual nucleotides to produce a new strand of DNA using the old strand as a template. They also carry out DNA proofreading and repair. Ligase binds the DNA fragments together by addition of phosphates in the gaps that remain in the phosphate-ribose sugar backbone. DNA Replication Overview A T C G T A A T G C (a) Parent molecule Each strand of the DNA double helix has all the information needed to reconstruct the other half by the mechanism of base pairing. Because each strand can be used to make the other strand, they are said to be complementary. DNA Replication Overview A T A T C G C G T A T A A T A T G C G C (a) Parent molecule (b) Separation of strands 1. DNA helicase begins replication by separating the strands and exposing the nucleotide sequence. 2. Primase adds a primer to the DNA molecule to initiate replication 3. DNA polimerases move along the two strands, pairing complementary bases to the exposed nucleotides and proofreads the added segments DNA Replication Overview A T A T A T A T C G C G C G C G T A T A T A T A A T A T A T A T G C G C G C G C (a) Parent molecule (b) Separation of strands (c) “Daughter” DNA molecules, each consisting of one parental strand and one new strand 4. DNA ligase seals up the fragments into one long continuous strand 5. Each original strand joins its complementary strand to form a DNA molecule, resulting in two identical DNA molecules. DNA Replication Overview