UCLA Computer Science Department High-performance Pattern Detection and Discovery for Databases and Data Streams Barzan Mozafari Adviser: Prof. Carlo Zaniolo Committee Members: Prof. Junghoo Cho, Prof. D. Stott Parker, and Prof. Mark Hansen Winter 2011 Big Picture 1. Query Languages that allow for the expression of complex patterns 2. Scalable Systems that support such languages and can handle massive, high-arrival data 3. Efficient, One-pass Algorithms that can mine large amounts of stored or streaming data and extract useful patterns Data Overview • Introduction • Query Languages for Pattern Detection – – – – Kleene-* Constructs in SQL Nested Words [SIGMOD’10, VLDB’10] Optimization [Work in progress] XSeq [Work in progress] • Conclusion Complex Event Patterns • Sequences in DBs and CEP over data streams • Academic and industrial interest: – SQL-TS [PODS ‘01] – SASE [2006], SASE+ [2008] – SQL Change proposal, 2007 (by Oracle, IBM and Streambase) – Other industrial and academic languages: • Cayuga & CEL • CEDR • Microsoft CEP & LINQ Our Contribution: K*SQL 1. A powerful language for: i. Expressing more complex patterns on relational streams and sequences ii. Querying data with more complex structures, e.g, XML and genomic data 2. 3. A unifying engine for sequence patterns and XML New optimization techniques • 4. 5. pattern search over nested words Efficient query execution backend for other languages XSeq: An XPath-resembling language to bring Kleene-* to XML applications Regular Expressions in SQL rfid_readings (Time, SensorType, ensorId, ItemId) Nested Kleene-*: K*SQL Timestamp BadgeID Room 1226633804799 26 Room12 1226633805799 2 Room7 1226633806799 26 Room14 1226633807799 5 Room37 1226633808799 5 Room37 … … … Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID Lab Lab Room2 FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN Room12 Room7 Lab Room2 Room7 Exit Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID L Lab L Lab Room2 FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( L ) WHERE L.room = ‘Lab’ Room12 Room7 Lab Room2 Room7 Exit Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID L+ L Lab L Lab Room2 FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( L+ ) WHERE L.room = ‘Lab’ Room12 Room7 Lab Room2 Room7 Exit Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( L+ O+ ) WHERE L.room = ‘Lab’ AND O.room != ‘Decontamination’ L+ O+ L Lab L Lab O Room2 O Room12 O Room7 Lab Room2 Room7 Exit Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID L+ R FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( (R: L+ O*) ) WHERE L.room = ‘Lab’ AND O.room != ‘Decontamination’ O+ L+ R O+ L Lab L Lab R Room2 R Room12 R Room7 L Lab R Room2 R Room7 Exit Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID L+ R FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( (R: L+ O*)+ ) R+ WHERE L.room = ‘Lab’ AND O.room != ‘Decontamination’ O+ L+ R O+ L Lab L Lab R Room2 R Room12 R Room7 L Lab R Room2 R Room7 Exit Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID L+ R FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( (R: L+ O*)+ X) R+ WHERE L.room = ‘Lab’ AND O.room != ‘Decontamination’ AND X.room = ‘Exit’ O+ L+ R O+ L Lab L Lab R Room2 R Room12 R Room7 L Lab R Room2 R Room7 X Exit Employees who spend >1 hour in the lab but leave without going to decontamination room SELECT badgeID L+ R FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( (R: L+ O*)+ X) R+ WHERE L.room = ‘Lab’ AND O.room != ‘Decontamination’ AND X.room = ‘Exit’ AND sum(R.Last(L).timestamp – R.First(L).timestamp) > 3600 O+ L+ R O+ L Lab L Lab R Room2 R Room12 R Room7 L Lab R Room2 R Room7 X Exit Strictly More Expressive, through: (i)Nested Kleene-*, (ii) Labels, i.e. Aliases SELECT badgeID FROM rfid PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( (R: L+ O*)+ X) WHERE L.room = ‘Lab’ AND O.room != ‘Decontamination’ AND X.room = ‘Exit’ AND sum(R.Last(L).timestamp – R.First(L).timestamp) > 3600 Strictly More Expressive, through: (i)Nested Kleene-*, (ii) Labels, i.e. Aliases SELECT badgeID, L+ Last(R).Last(L).timestamp – First(R).First(L).timestamp) R FROM rfid + O PARTITION BY badgeID ORDER BY timestamp AS PATTERN ( (R: L+ O*)+ X) L+ R+ WHERE L.room = ‘Lab’ R AND O.room != ‘Decontamination’ O+ AND X.room = ‘Exit’ AND sum(R.Last(L).timestamp – R.First(L).timestamp) > 3600 L Lab L Lab R Room2 R Room12 R Room7 L Lab R Room2 R Room7 X Exit K*SQL Checkpoint 1. A powerful language with a very efficient implementation based on FSA 2. Subsumes SQL-MR, SASE+, Cayuga, SQL-TS 3. Many interesting applications – including queries on semistructured documents Very natural question: Can we handle full XML? Automata and XML Word Automata (FSA): only linear structure is explicit, cannot model parenthesis languages Ordered Tree Automata (OTA): only hierarchical structure is explicit, exponentially less succinct for word queries Pushdown Automata (PDA): Many problems are undecidable; expensive complexity Advances in the Automata World Nested Words [Alur’06] Linear sequence + well-nested edges Positions labeled with symbols in S a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 Positions classified as: Call positions: both linear and hierarchical successors Return positions: both linear and hierarchical predecessors Internal positions: otherwise 20 Nested Word Applications XML Document <conference> <name> CAV 2006 </name> <location> <city> Seattle </city> <hotel> Sheraton </hotel> </location> <sponsor> MSR </sponsor> <sponsor> Cadence </sponsor> </conference> Program global int x; bool P() { … x = 3; if Q x = 1 ; … } bool Q () { local int y; … x = y; return (x==0); } RNA Sequence Primary structure: Linear sequence of nucleotides (A, C, G, U) Secondary structure: Hydrogen bonds between nucleotides U G C G C A A C U G C A C G G U Odious Comparison Property FSA NWA PDA input is read from left to right Yes Yes Yes Deterministic automata as expressive as non-deterministic ones Yes Yes No Closed under complementation Yes Yes Only for DPDA w/ final state Closed under union, intersection, concatenation, and Kleene-* Yes Yes No Emptiness Decidable Decidable Decidable membership, language inclusion, language equivalence Decidable Decidable Undecidable Can recognize paranthesis languages? No Yes Yes NWA is exponentially more succinct than Tree Automata No query language has been proposed for NW XML Sigmod Record:SAX-3 <!ELEMENT SigmodRecord (issue)* > <!ELEMENT issue (volume,number,articles) > <!ELEMENT volume (#PCDATA)> <!ELEMENT number (#PCDATA)> <!ELEMENT articles (article)* > <!ELEMENT article (title,initPage,endPage,authors) > <!ELEMENT title (#PCDATA)> <!ELEMENT initPage (#PCDATA)> <!ELEMENT endPage (#PCDATA)> <!ELEMENT authors (author)* > <!ELEMENT author (#PCDATA)> <!ATTLIST author position CDATA #IMPLIED> tagI ndex Type Token Value 1 open Sigmod Record _ 2 open issue _ 3 open volume _ 4 text _ 11 5 close volume _ 6 open number _ … … … … 25 open author _ 26 attribute position 01 27 text _ Karen Botnich … … … … <SigmodRecord> <issue> … <article> <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. XPath Find articles of Carlo Zaniolo as the 2nd co-author //article [authors/author [@position = "01" and text()="Carlo Zaniolo"] ]/title/text() K*SQL Question: Can we query nested words in K*SQL? In particular: can we express traditional XML queries – i.e. those often expressed via XPath/XQuery: Find articles of Carlo Zaniolo as the 2nd co-author SELECT Title.token AS articleName FROM sigmod_record AS PATTERN ( ) WHERE <SigmodRecord> <issue> … <article> <title> Implementation of GEM </title> <initPage> 45 </initPage> … <aut hors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author <SigmodRecord> <issue> … SELECT Title.token AS articleName FROM sigmod_record AS PATTERN <article> (OpArt ) WHERE OpArt.value = ‘<article>’ <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author <SigmodRecord> <issue> … SELECT Title.token AS articleName FROM sigmod_record AS PATTERN (OpArt <article> ) WHERE OpArt = open(‘article’) <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author SELECT Title.token AS articleName FROM sigmod_record AS PATTERN (OpArt OpTitl ) WHERE OpArt = open(‘article’) AND OpTitl = open(‘title’) <SigmodRecord> <issue> … <article> <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author SELECT Title.token AS articleName FROM sigmod_record AS PATTERN (OpArt OpTitl Title ) WHERE OpArt = open(‘article’) AND OpTitl = open(‘title’) <SigmodRecord> <issue> … <article> <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author SELECT Title.token AS articleName FROM sigmod_record AS PATTERN (OpArt OpTitl Title ClTitl ) WHERE OpArt = open(‘article’) AND OpTitl = open(‘title’) AND ClTitl = close(‘title’) <SigmodRecord> <issue> … <article> <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author SELECT Title.token AS articleName FROM sigmod_record AS PATTERN (OpArt OpTitl Title ClTitl E* ) WHERE OpArt = open(‘article’) AND OpTitl = open(‘title’) AND ClTitl = close(‘title’) AND isElement(E) <SigmodRecord> <issue> … <article> <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author SELECT Title.token AS articleName FROM sigmod_record AS PATTERN (OpArt OpTitl Title ClTitl E* OpAuths ) WHERE OpArt = open(‘article’) AND OpTitl = open(‘title’) AND ClTitl = close(‘title’) AND isElement(E) AND OpAuths = open(‘authors’) <SigmodRecord> <issue> … <article> <title> Implementation of GEM </title> <initPage> 45 </initPage> … <authors> … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author <SigmodRecord> <issue> … SELECT Title.token AS articleName <article> <title> FROM sigmod_record Implementation of GEM AS PATTERN </title> (OpArt OpTitl Title ClTitl E* <initPage> OpAuths E* 45 ) </initPage> WHERE OpArt = open(‘article’) … AND OpTitl = open(‘title’) AND ClTitl = close(‘title’) <authors> AND isElement(E) AND OpAuths = open(‘authors’) AND ClArt = close(‘article’) … <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. Find articles of Carlo Zaniolo as the 2nd co-author <SigmodRecord> <issue> … SELECT Title.token AS articleName <article> <title> FROM sigmod_record Implementation of GEM AS PATTERN </title> (OpArt OpTitl Title ClTitl E* <initPage> OpAuths E* OpAu 45 ) </initPage> WHERE OpArt = open(‘article’) … AND OpTitl = open(‘title’) AND ClTitl = close(‘title’) <authors> … AND isElement(E) AND OpAuths = open(‘authors’) AND OpAu = open(‘author’) <author position="01"> Carlo Zaniolo </author> … </authors> </article> …. 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Find articles of Carlo Zaniolo as the 2nd co-author <SigmodRecord> <issue> … SELECT Title.token AS articleName <article> <title> FROM sigmod_record Implementation of GEM AS PATTERN </title> (OpArt OpTitl Title ClTitl E* <initPage> OpAuths E* OpAu Pos Author ClAu E* 45 ) </initPage> WHERE OpArt = open(‘article’) … AND OpTitl = open(‘title’) AND ClTitl = close(‘title’) <authors> … AND isElement(E) <author AND OpAuths = open(‘authors’) position="01"> AND OpAu = open(‘author’) Carlo Zaniolo AND pos = attribute(‘position’, ‘01’) </author> AND author.value = `Carlo Zaniolo’ AND ClAu = close(‘author’) … </authors> </article> …. 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AND ClArt = close(‘article’) Find articles of Carlo Zaniolo as the 2nd co-author <SigmodRecord> <issue> … SELECT Title.token AS articleName <article> <title> FROM sigmod_record Implementation of GEM AS PATTERN </title> (OpArt OpTitl Title ClTitl E* <initPage> OpAuths E* OpAu Pos Author ClAu E* 45 ClAuths ClArt) </initPage> WHERE OpArt = open(‘article’) … AND OpTitl = open(‘title’) AND ClTitl = close(‘title’) <authors> … AND isElement(E) <author AND OpAuths = open(‘authors’) position="01"> AND OpAu = open(‘author’) Carlo Zaniolo AND pos = attribute(‘position’, ‘01’) </author> AND author.token = `Carlo Zaniolo’ … AND ClAu = close(‘author’) </authors> AND ClAuths = close(‘authors’) </article> …. AND ClArt = close(‘article’) Sequence Queries over XML: ‘W’-Patterns in Stocks <!ELEMENT Stocks (Stock)* > <!ELEMENT Stock (symbol, date, price, volume)> <!ELEMENT symbol (#PCDATA)> <!ELEMENT date (#PCDATA)> <!ELEMENT price (#PCDATA)> <!ELEMENT volume (#PCDATA)> W-patterns in NASDAQ transactions with volume>1000 SELECT FIRST(Z).FIRST(X).Sym.token FROM Nasdaq PARTITION BY Y.X.Sym.token AS PATTERN (Z: (X: OpSt Sym Date OP Price1 CP OpV Volume ClV ClSt)* (Y: OpSt Sym Date OP Price2 CP OpV Volume ClV ClSt)* )^2 WHERE OpSt = open(‘Stock’) AND ClSt = open(‘Stock’) AND OP = open(‘price’) AND CP = close(‘price’) AND OpV = open(‘volume’) AND ClV = close(‘volume’) AND INT(volume.token) >= 100 AND Z.X.price1.token < Z.PREV(X).price1.token AND Z.Y.price2.token > Z.PREV(Y).price2.token <Stock symbol=“YHOO” date=“01-01-2010 23:10:00”> <price> 18.50 </price> <volume> 21 </volume> </Stock> <Stock symbol=“YHOO” date=“01-01-2010 23:16:00”> <price> 18.70 </price> <volume> 11 </volume> </Stock> … W-patterns in NASDAQ transactions with volume>1000 SELECT FIRST(Z).FIRST(X).Sym.token FROM Nasdaq PARTITION BY Y.X.Sym.token AS PATTERN (Z: (X: OpSt Sym Date OP Price1 CP OpV Volume ClV ClSt)* (Y: OpSt Sym Date OP Price2 CP OpV Volume ClV ClSt)* )^2 WHERE OpSt = open(‘Stock’) AND ClSt = open(‘Stock’) AND OP = open(‘price’) AND CP = close(‘price’) AND OpV = open(‘volume’) AND ClV = close(‘volume’) AND INT(volume.token) >= 100 AND Z.X.price1.token < Z.PREV(X).price1.token AND Z.Y.price2.token > Z.PREV(Y).price2.token <Stock symbol=“YHOO” date=“01-01-2010 23:10:00”> <price> 18.50 </price> <volume> 21 </volume> </Stock> <Stock symbol=“YHOO” date=“01-01-2010 23:16:00”> <price> 18.70 </price> <volume> 11 </volume> </Stock> … W-patterns in NASDAQ transactions with volume>1000 SELECT FIRST(Z).FIRST(X).Sym.token FROM Nasdaq PARTITION BY Y.X.Sym.token AS PATTERN (Z: (X: OpSt Sym Date OP Price1 CP OpV Volume ClV ClSt)* (Y: OpSt Sym Date OP Price2 CP OpV Volume ClV ClSt)* )^2 WHERE OpSt = open(‘Stock’) AND ClSt = open(‘Stock’) AND OP = open(‘price’) AND CP = close(‘price’) AND OpV = open(‘volume’) AND ClV = close(‘volume’) AND INT(volume.token) >= 100 AND Z.X.price1.token < Z.PREV(X).price1.token AND Z.Y.price2.token > Z.PREV(Y).price2.token X* Y* X* Y* <Stock symbol=“YHOO” date=“01-01-2010 23:10:00”> <price> 18.50 </price> <volume> 21 </volume> </Stock> <Stock symbol=“YHOO” date=“01-01-2010 23:16:00”> <price> 18.70 </price> <volume> 11 </volume> </Stock> … Optimization in K*SQL • Compile-Time: – Inferring inter-predicate implications – Query re-writing, e.g. adding more constrainst – Greedy predicate assignment • Run-Time: Avoiding unnecessary backtracks – VPSearch: Extending KMP search algorithm to nested words and visibly pushdown words – Optimizing non-determinisitc queries • i.e. all-match query modes K*SQL vs. XML Engines References • [1] Data mining: Staking a claim on your privacy. 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