Shared Health Research Information Network Current Status, Demo, and Open Source Andrew McMurry, MS SHRINE Architect Harvard Medical School Center for BioMedical Informatics Children’s Hospital Informatics Program Harvard/MIT HST Boston University Bioinformatics PHD Student Andrew_McMurry(@) hms.harvard.edu History of the SHRINE world in 1 minute Partners RPDR i2b2 Data Repository Shawn Murphy et all (wont steal their thunder here) Everyday patient encounters huge research cohorts SPIN cross-hospital query model Extract, Transform <de-identifiy, autocode>, Load Federated query over multiple independent hospitals Harvard CTSA funded Recombinant deploying i2b2 across the country Overly simplified: clinical data repository + federated query = SHRINE SHRINE Technical Architecture Bird’s Eye View Leverage local i2b2 deployments Broadcast queries and aggregate responses across autonomous sites as if they were “one clinical data warehouse” There is no central database Connect sites in a peer-to-peer or hub-spoke fashion Technical Architecture Architecture, “cell” view Current Status : in BETA! East Coast : Harvard Effort BETA system running at Harvard across BIDMC, Children’s, and Partners representing both BWH and MGH. Last AUG: Prototype 1 year of data with demographics and diagnosis IRB approval for demonstration only NOW Patient data from 2001+ Demographics, Diagnosis, Medications, some Labs Full IRB approvals Current Status : in BETA! Demo use cases, things to think Lung cancer cases requesting biospecimens Irritable Bowel Syndrome requesting sized cohorts Pediatric rheumatology Creating national registry about….. Current Status West Coast University of Washington UCSF UC Davis Nick Anderson et all : CICTR Effort Current Status National Registry : Pediatric Rheumatology “Grand Opportunity” Grant 60 institutions, 2 years SHRINE has been selected as inter-institutional glue Consented patients, prospective data collection Shared Virtual Machine Hosting SHRINE Open Source : brewing in the background Fast recap of 2006 and 2009 Open Source proposals: 1. Write documentation as if we are writing code stubs Preconditions Steps (Algorithm) Post-conditions + + = Use Cases or “Scenarios” 2. Test driven development Write the test first Implement second Regression test everything all the time 3. Continuous Integration Test everything every time you change any code SHRINE Open Source Process Leveraging routine development activities 1. Public access 2. Public access to to bug latest tracking source system code 3. Public mailing lists • • • 4. Test Shrine-users Shrine-developers Shrine-announce Driven Development 5. Continuous integration (daily builds of the complete software) Acknowledgements: Core SHRINE team Zak Kohane Griffin Weber Shawn Murphy Dan Nigrin Ken Mandl Sussane Churchill Doug Macfadden Matvey Palchuck Andrew McMurry (SHRINE Lead / HMS) (HMS CTO / bidmc) (I2B2 CRC / partners) (Children’s CIO) (Public Health Use Cases/ CHIP IHL) (I2B2 Executive director) (HMS CBMI IT Director) (Ontology Lead / HMS) (Architect / HMS) Could give an entire talk on all the collaborators, multi-institutional effort. Asking forgiveness from those not listed Acknowledgements: Core SPIN team Zak Kohane (SPIN PI / HMS) Frank Kuo (PSL Program Director / BWH) (PSL Pathologist / MGH) (PSL Pathologist / BIDMC) (PSL Pathologist / Children’s) (PSL Developer / BWH ) (Biosurviellance PI/ Children’s) (Biosurviellance Dev Lead / Children’s) (SPIN Developer/ HMS) (SPIN Developer / NCI at HMS) (SPIN Developer / HMS John Gilbertson Mark Boguski Antonio Perez Mike Banos Ken Mandl Clint Gilbert Greg Polumbo Ricardo Delima Britt Fitch http://spin.chip.org/community.html Acknowledgements: Core I2b2 team https://www.i2b2.org/about/structure.html Thank You http://catalyst.harvard.edu/shrine Andrew_McMurry (@) hms.harvard.edu