Cell cycle, DNA, and replication BIO… LIFE…. THINK ABOUT THIS: What do we do in our lifetime? What are the major stages of our life? What are the Major stages of physical development in our lives? What would it look like if we put this into a pie chart? Imagine you are a bacteria: What are the major stages in your life? TRY ME: What is A? B? C? What is D/E/F/G collectively called? What is D? What is E? What is F? What is G? The life of a cell Cells have a life cycle just like we do- born, grow, reproduce, and die. They only spend part of their life cycle reproducing (M)- mitosis Cell Cycle 1. Interphase (G1, S, G2) – cell grows, prepares to divide (G phases) and DNA replicates (S phase) 2. Mitosis: nucleus divides; each nuclei winds up with the same # and kind of chromosomes as the parent (P-M-A-T) 3. Cytokinesis: division of cytoplasm COMING UP IN THIS CLASS… In the upcoming months, we will be analyzing what happens stages in great detail. Which stage do you think the following upcoming material will focus on? Topics to cover: - Cell cycle and events - DNA structure and replication? - DNA structure - Cell reproduction (asexual- bacteria)? - Cell reproduction (growth- multicellular)? - DNA and making proteins - Proteins and regulation of the cell cycle - What happens when things go wrong…. NUCLEIC ACIDS: The 4th category of Biomolecules What were the 4 macromolecules/biomolecules? What are monomers? Polymers? What is the name of the process that builds monomers to polymers called? What is the reverse process called? 9 10 Nucleic Acids are the chemical link between generations dating back to the beginning of life on earth. 11 A nucleic acid is a complex macromolecule that stores information in cells in the form of a code. 12 Terminology: What is the difference and relationship between the following: - DNA Chromosomes Genes Centromere Nucleotides -nucleus - chromatid - chromatin -histones - telomere WHAT IS THE “STUFF” OF HEREDITY? WHAT IS ITS STRUCTURE? The following scientists helped to answer these questions. Griffith Avery Hershey-Chase Watson, Crick Wilkins and Franklin Chargaff I. GRIFFITH’S EXPERIMENT 1928 A. - make a vaccine against harmful S. pneumoniae bacteria 1. virulent S strain (S. pneumoniae) a. virulent means disease causing b. capsule around the bacteria provides protection from body defenses 2. non virulent R strain (no capsule) a. destroyed by body(can not cause disease) B. PROCEDURE and RESULTS 1. mouse injected with R cells 2. mouse injected with S cells 3. mouse injected with heat killed S cells 4. mouse injected with killed S cells mixed with live R cells mouse lives mouse dies mouse lives mouse dies Results of Griffith’s Experiment C. C - Heat-killed S bacteria release hereditary material that makes R strain bacteria virulent HOW??? 1.Principle of Transformation a. transfer of genetic material (DNA) from one organism to another b. DNA for making a capsule was transferred from the S strain to the R strain making it virulent II. AVERY’S EXPERIMENTS (early 1940’s) A – Is the transforming agent protein, RNA or DNA? B. PROCEDURE – (Three Experiments) 1. destroy 3 different molecules in the heat-killed S strain bacteria and mix with R strain bacteria a. destroy protein (protease enzyme) b. destroy RNA (RNase enzyme) c. destroy DNA (DNase enzyme) C. Results 1. Missing protein a. transforms R cells to S cells (mouse dies) 2. Missing RNA a. transforms R cells to S cells) (mouse dies) 3. Missing DNA a. did not transform R cells to S cells (mouse lives) Oswald Avery D. Conclusion – DNA is responsible for the transforming principle III. HERSHEY-CHASE EXPERIMENT 1952 (Martha Chase and Alfred Hershey) – Is the hereditary material in viruses protein or DNA? B. PROCEDURE 1. Label protein and DNA in a phage with radioactive isotopes (S-35 and P-32) a. a phage is a virus that attacks bacteria b. S-35 labels protein and P-32 labels DNA Martha Chase and Alfred Hershey used Phage Viruses for Their Experiment B. Procedure 2. Allow protein-labeled and DNAlabeled phage (virus) to infect E. coli bacteria 3. remove and separate phage (virus) from the bacteria (E. coli) Hershey-Chase Experiment - all viral DNA and a small amount of protein entered the bacteria D. CONCLUSION - DNA is the hereditary molecule in viruses IV. Watson and Crick (1953) /Wilkins and Franklin A. Watson and Crick 1. double helix model of DNA based on the work of other scientists B. Maurice Wilkins and Rosalind Franklin 1. x-ray diffraction photographs of DNA helped Watson and Crick develop their model 2. Watson, Crick and Wilkins received Nobel Prize in l962 (Franklin died in 1958 and could not be named for the award) X-ray Diffraction Photo of DNA) Rosalind Franklin and Maurice Wilkens DNA Double Helix Watson and Crick What are chromosomes??? Nucleotides make up DNA DNA winds into Chromatin Chromatin condenses into Chromosomes are composed of chromatids held together at the centromere Chromosomes contain Genes Genes are sections of DNA DNA is made of nucleotides Chromosomes contain Instructions for making YOU!!! 29 Where is it located in the cell? NUCLEUS! How is it arranged? Chromosome - DNA Chromosome- Chromatid Figure 9-4 Chromosome structure DNA double helix histone proteins DNA wound around histone proteins Coiled DNA/histone beads Loops attached to a protein scaffold; this stage of partial condensation typically occurs in a nondividing cell protein scaffold Folded chromosome, fully condensed in a dividing cell 33 NUCLEIC ACID What is the monomer of nucleic acids called? What components does it have? What are the 2 major nucleic acids? What do they do? What ways are they similar in structure? What 3 ways do they differ in structure? THEME….how is the structure related to their function? 34 MONOMER: Nucleic acids are made of long chains of nucleotides. Nucleotides are made of three components: 1. sugar 2. phosphate group 3. nitrogen base Examples of nucleic acids are : 1. DNA 2. RNA 35 36 Purpose? To code for everything in your body...genetic blueprint! DNA = deoxyribonucleic acid its components are: 1. deoxyribose (sugar) 2. phosphate group 3. nitrogen base The Components and Structure of DNA 37 There are four kinds of bases in in DNA: adenine guanine cytosine thymine 38 Adenine (A) – Thymine (T) Guanine (G) – Cytosine (C) A and G are purines (AGgies eat Purina) C and T are pyrimidines 39 The paired nitrogen bases formed two long strands of nucleotides that compliment each other. 40 Nitrogen Bases are connected between sugars and phosphates They declared, “This structure is a “double helix” The structure is antiparallel (upsidedown). This causes a problem in replication Because replication is a one way direction. DNA Double Helix 41 42 DNA forms chromosomes, units of genetic information which pass from parent to offspring. DNA is wound into structures called chromosomes during cell division 43 If you unraveled all your chromosomes from all of your cells and laid out the DNA end to end, the strands would stretch from the Earth to the Moon about 6,000 times. 44 RNA has a different sugar than DNA RNA = ribonucleic acid It’s components are : 1. ribose (sugar) 2. phosphate group 3. nitrogen base 45 It also has different bases than DNA adenine --- uracil cytosine --- guanine RNA is also single stranded, not double stranded like DNA. 46 DNA RNA - Double stranded - Single stranded - Sugar = deoxyribose - Adenine pairs with Thymine - Sugar = ribose - Adenine pairs with Uracil 47 48 I. Why Must DNA Replicate? Every time a cell divides, it must first make a copy of it’s chromosomes. Therefore, each cell can have a complete set of chromosomes. 49 Without replication, species could not survive and individuals could not successfully grow and reproduce. 50 II. How DNA Replicates DNA is a molecule composed of TWO strands, each consisting of a sequence of nucleotides. The order of the nitrogen bases on one strand mandates the sequence of bases on the complementary strand. 51 If you know the bases on one strand, you can predict which bases will occur on the complementary strand. A G T C C C T ----------------------------- T C A G G G A During Replication each strand serves as a template to create a new strand. 52 III. Steps In Replication 1) Helicase break down the hydrogen bonds between the two DNA strands, unzipping the molecule DNA Replication 1. Helicase break the hydrogen bonds between the bases so the chains of DNA can separate or unwind 54 2) As the DNA unzips, SSB (single strand binding protein holds the strands down. 3) Primase(RNA) makes start platforms 4) DNA polymerase adds nucleotides (from surroundings in the nucleus) bond to the single strands by base pairing (A-T, GC) SEMI- CONSERVATIVE REPLICATION: ** The result of this process is the formation of TWO DNA molecules, each identical to the original molecule- with one old strand and one new strand. 56 57 DNA Replication 2. Other enzymes add new nucleotides, which form new hydrogen bonds with their complimentary nucleotide. Red = original strand Blue = new strand DNA Replication Results in 2 semi-conservative double stranded molecules WHAT IS THE ROLE OF: HelicaseSSBReplication fork- DNA PolymeraseLigaseLeading strandLagging strand- ANIMATIONS OF DNA REPLICATION http://www.bioteach.ubc.ca/TeachingResources/MolecularBiology/DNAReplication.s wf http://www.mcb.harvard.edu/Losick/images/TromboneFINALd.swf http://highered.mcgrawhill.com/sites/0072556781/student_view0/chapter11/animation_quiz_2.html http://www.sinauer.com/cooper/4e/animations0601.html AMEOBA SISTERS: https://www.youtube.com/watch?v=5qSrmeiWsuc&index=1&list=PLwL0Myd7Dk1F1p p-DaLx3ygO_7xA-yyd4 62 1. What are the two types of nucleic acids? 2. What are the three components of a nucleotide? 3. What are the similarities between DNA and RNA? What are the differences? 4. Describe the process of DNA replication. 5. Why does a DNA molecule undergo replication?