IA ON BIOCHEMISTRY – YOUR RESOURCE CENTRE WHERE SHOULD I BEGIN? This resource sheet is NOT an exhaustive guide to the many types of experiments you may want to do for your next IA. Rather, it should allow you to ‘make a start’ in your quest to design and complete your next Official IB Biology experimental project. Remember that your IA’s are worth a whopping 25% of your overall IB Biology Grade. Furthermore, they need a huge investment of your time and of class time. If this IA goes well, you will have one good Design, DCP and CE to submit to the IB. Remember that you only need submit 2 of each! This file contains a collection of ideas for experiments, experimental protocols and resources relating to experiments you might light to conduct relating to the IB Biochemistry content. Try to choose which experiment you want to work on and let me know by this Friday (Feb 15 th). That way, I can be sure to have all of the resources you need once you are back form academic travel. You can, of course, come up with your own ideas and your own experiment, You should DEFINITELY customize any protocol you learn about here to make it unique, and your own. It is a GREAT idea to work with a partner or a couple of colleagues. You can act as assistants for each other as you run your experiments, and share background resources. For example, one of you may choose to examine the effect of pH change on enzyme activity measured in a specific way, while another may choose to investigate the effect of changing substrate concentration on the same enzyme activity measured using the same method…. I AM HERE TO HELP YOU. I WANT TO HELP YOU! I WANT YOU TO HAVE FUN DOING YOUR EXPERIMENT! So please consult me! I know that this is hard, and I want to help in any way I can! Your first decision is whether you want to do an investigation into the biologically important chemical properties of water (Specific heat capacity, freezing point, specific heat of vaporization etc etc) OR an investigation of aspects of enzyme function. Remember, enzyme activity can be affected by a number of factors, including 1. Temperature 2. pH 3. Substrate concentration 4. Enzyme concentration 5. Presence or absence of inhibitors There is a GREAT web resource reviewing these factors (which you can quote as a source) from Worthington Biochemistry here. LACTASE Ideas: 1. How does pH change affect lactase activity? 2. How does temperature change affect lactase activity? 3. How does substrate concentration affect lactase activity? 4. End-product inhibition of lactase activity 1. This is a fantastic teaching resource with a whole collection of ideas for lactase enzyme labs 2. This is a great Vernier probe lab which uses CO2 production by yeast as the means of testing for lactase enzyme activity. Unusual and interesting… 3. This is a simple protocol to look at the effect of heat on lactase enzyme activity. You could adapt it to look at other factors such as substrate concentration, pH, etc… 4. This link will give you useful background information about optimal temperature and pH for lactase, as well as ideas for investigating end-product inhibition on lactase efficacy. 5. More background information about lactase PEPSIN Here is a link giving you fine detail about pepsin… 1. An overview to the use of a Vernier Colorimeter to investigate factors which influence the efficacy of pepsin for breakdown of protein. 2. An interesting investigation which looks at the efficacy of antacids (mediation used to treat indigestion), and their effects on pepsin activity CATALASE 1. Vernier probe lab that measures catalase activity using a gas pressure sensor. This comes complete with a useful video! 2. A Vernier lab that measures catalase enzyme activity using an oxygen pressure sensor. 3. A really useful lab, including a simulation to help you gain confidence, looking at the effects of temperature on catalase activity, using an acid/base titration method. It can easily be altered to allow you to look at pH, substrate concentration, enzyme concentration or inhibitor effects! 4. A lab protocol which uses filter paper discs soaked in catalase to measure the effects of pH or temperature change on catalase activity 5. A lab protocol that investigates the effect of an enzyme inhibitor, copper, on catalase activity using the filter paper method AMYLASE Amylase is an enzyme that catalyses the hydrolysis of starch. Iodine and starch react to produce a blue-black colour, so that iodine can be used to show the rate of starch breakdown by amylase. A light probe or colorimeter can be used to indicate the change in optical density as the iodine solution changes colour. 1. A brief introduction to the use of colorimetry to measure starch breakdown by amylase 2. A simple ‘practical’ experiment that could be adapted to use proprietary amylase and the starch source of your choice! CHEMICAL PROPERTIES OF WATER 1. A link from Penn State University, describing one method to evaluate and compare the specific heat capacity of distilled water compared with other solvents or liquids (for example, salt water). A collection of Vernier Labs which investigate the freezing properties of water and compare with other solvents or liquids (for example, varying degrees of salinity) 1. Vernier 1 2. Vernier 2: Freezing of ocean water 3. Vernier 3: Effects of temperature on the solubility of oxygen in water 4. A great NASA link to the a collection of experiments which investigate effects of salinity on the water cycle – evaporation, specific heat capacity, etc etc. 5. A link to a very simple experiment investigating the effect of salinity on the heat of vaporization of water