The Mystery Begins… Lesson 1.1 Investigating the Scene Lesson 1.2 DNA Analysis Lesson 1.3 The Findings What can be done at a scene of a mysterious death to help reconstruct what happened? How do the clues found at a scene of a mysterious death help investigators determine what might have occurred and help identify or exonerate potential suspects? How do scientists design experiments to find the most accurate answer to the question they are asking? How are bloodstain patterns left at a crime scene used to help investigators establish the events that took place during a crime? Biomedical Science Control Group Dependent Variable Experiment Forensic Science Hypothesis Independent Variable Negative Control Personal Protective Equipment Positive Control It was a hot, 92°F summer morning. The emergency call came in at 9:45 am. A man contacted the police to report that he was worried about his next door neighbor, a woman named Anna Garcia. He informed the police that he had spoken to Anna the previous morning when he saw her walking her dog around 6:30 am. He noted that she was wearing a sweater even though they were currently experiencing a heat wave. He decided to call the police this morning because Anna’s dog had been barking excitedly for the last two hours (which is extremely unusual in this normally quiet suburban neighborhood). He tried to call Anna on the telephone, but no one answered. Next he tried ringing her doorbell, but there was no answer. The 911 operator notified the local police and the emergency medical technicians (EMT). Both the police and the EMT arrived at the scene at 9:56 am. The front door had to be broken down. Upon entering the house, they found Anna lying face down in the entry hallway. It was a comfortable 73˚F inside the house. The EMT determined that Anna was dead. The police immediately notified your team of crime scene investigators as well as the medical examiner, both of whom were dispatched to the house. Has a crime been committed? The mystery begins! It is your job to put together as many pieces of information as you can find. (Don’t worry – the dog was taken to the home of close family friends and is doing just fine.) Three Ring Binder- tabs for each unit, protocols and rubrics, career journals and for community service Lab book- Notes on minilectures, experiments, activities and projects Date Name of lecture/activity Name of partners/group USB-Folders for each unit for all assignments within that unit New Program! Very Cool! While Learn with a partner… you work: Photos & Web Profiles! Read the introduction Get organized! Search methods… Examination INVESTIGATE EVERY PART OF THE SCENE Victim's Stats Age: 38 Weight: 165 Height: 64 Inches Race: Hispanic Sex: Female Persons of Interest Documentation End-of-text In-text (later) Validates our claims Discuss later in detail Decreases Plagiarism No cut and paste Grounds for dismissal Career Journals 1. 911 Operator 2. EMT 3. Crime Scene Investigator Guidelines Rubric Example Wepage Work as a Forensic Scientist Process evidence to get answers and identify potential suspects! But… safety first. Specialized clothing or equipment worn by an employee for protection against infectious materials (OSHA) Factors Influencing PPE Selection: Type of exposure anticipated Durability and appropriateness for the task Fit Gloves – protect hands Gowns/aprons – protect skin and/or clothing Masks and respirators– protect mouth/nose Respirators – protect respiratory tract from airborne infectious agents Goggles – protect eyes Face shields – protect face, mouth, nose, and eyes EXPOSURE 1 EXPOSURE 2 Gloves – Use when touching blood, body fluids, secretions, excretions, contaminated items; for touching mucus membranes and non-intact skin Gowns – Use during procedures and patient care activities when contact of clothing/ exposed skin with blood/body fluids, secretions, or excretions is Mask and goggles or a face shield – Use during patient care activities likely to generate splashes or sprays of blood, body fluids, secretions, or excretions • Keep gloved hands away from face • Avoid touching or adjusting other PPE • Remove gloves if they become torn; perform hand hygiene before donning new gloves • Limit surfaces and items touched • Wash hands immediately after removing PPE. • Use soap and water or use an alcohol-based hand rub Forensic Chemist Presumptive tests ▪ Type of substance Confirmatory tests ▪ Exact substance Can we identify the unknown pills next to our victim? Follow specific directions for how to perform the analysis at each station. Fill out the Activity 1.1.4 Student Response Sheet as you work through each station. Revise your theories of what happened to Anna. Consider all analyzed evidence and what the evidence suggests at this time. Include any updated theories or information to your Investigative Notes. Experiment- A research study conducted to determine the effect that one variable has upon another variable. Researcher maximizes control over as many aspects of the environment as possible in order to prove that one variable affects another variable. Reliable: An experiment in which another researcher can perform exactly the same experiment and generate similar results. Valid: An experiment in which the results accurately describe the real world. Reliable- Another researcher can perform exactly the same experiment and generate similar results. Valid-Results accurately describe the real world. Formulate a hypothesis. Identify the problem. Design the procedure to be used to test the hypothesis. Carry out the experimental procedure. Analyze the data and observations. State the question you are trying to answer Specific Measurable Example Problem: Does InstaGrow Fertilizer make plants grow larger than plants grown without InstaGrow Fertilizer? The hypothesis is a clear prediction of the anticipated results. If…then… Indicates the independent and dependent variables in the experiment. Independent Variable: varied or manipulated, presumed cause Dependent Variable: measurable response, not manipulated, presumed effect Does ___________ cause/affect ___________? Independent Variable Dependent Variable Example Problem: Does InstaGrow Fertilizer make plants grow larger than plants grown without InstaGrow Fertilizer? Does InstaGrow Fertilizer cause/affect plant growth? ▪ Independent Variable: InstaGrow Fertilizer ▪ Dependent Variable: Plant Growth If fertilizer affects plant growth in a positive way then… The plants treated with InstaGrow Fertilizer will grow larger than the plants not treated with fertilizer. IV: use of the fertilizer DV: plant growth The prediction of the results is clearly stated The variables are clearly indicated Step-by-step detail for how to perform the experiment Every detail is important Experiment must be replicable All variables/conditions in an experiment need to be kept exactly the same (control variables) Except the independent variable (IV) Ensures that the IV is the only variable affecting the result Safety concerns Materials used Control group Control Variables: Environmental conditions that need to be consistent • Most difficult!!! How data will be collected and recorded How many trials will be performed Experiments need to include a control group Independent variable being tested is not applied so that it may serve as a standard for comparison against the experimental group where the independent variable is applied. Example: The control group for the fertilizer experiment is the group of plants NOT given the InstaGrow fertilizer. POSITIVE CONTROL Group expected to have a positive result Allows the researcher to show that the experimental set up was capable of producing results NEGATIVE CONTROL Control groups where conditions produce a negative outcome Identify outside influences which may be present that were not accounted for Scientist #1: The 10 plants grew an average of 40 inches each. Therefore, Scientist #1 concluded that InstaGrow Fertilizer makes plants growLARGER larger. THAN WHAT???? Scientist #2: The 5 plants given InstaGrow Fertilizer grew an average of 39 inches each, while the 5 plants NOT given InstaGrow Fertilizer grew an average of 41 inches each. Therefore, Scientist #2 concluded that InstaGrow Fertilizer does NOT make plants grow larger. Two scientists wanted to test to determine whether InstaGrow Fertilizer makes plants grow larger. Scientist #1: Ran the experiment with 10 plants. Planted each plant in the same amount and type of soil. Placed each plant in comparable environments. Gave each plant the same amount of sun each day. Gave each plant the same amount of water each day. Gave each plant the same amount of InstaGrow Fertilizer. Let grow for 30 days. Scientist #2: Ran the experiment with 10 plants. Planted each plant in the same amount and type of soil. Placed each plant in comparable environments. Gave each plant the same amount of sun each day. Gave each plant the same amount of water each day. Gave 5 plants the same amount of InstaGrow Fertilizer, while 5 plants received no fertilizer. Let grow for 30 days. Formulate a hypothesis. Identify the problem. Design the procedure to be used to test the hypothesis. Carry out the experimental procedure. Analyze the data and observations. Carry out Procedure Follow step-by-step procedure. Collect the data in data tables. Make and record observations. Analyze data Logically and clearly present all data and observations in the form of graphs and charts. Clearly and concisely analyze all data and observations. Write a conclusion statement directly related to the original hypothesis For example: “The hypothesis was correct…” Explain the rationale for the conclusion and clarify any details. Discuss any possible sources of error. Anything that might have affected the results of the experiment. Change your hypothesis. Re-design the procedure because of design flaws. Develop new questions based on the work in this experiment. Move on to a new or related research topic. Why do some types of fertilizer work better than others…? Why is it important (Brainstorm) Temperature & Body Cooling Partners & Assigned Temperatures: How’d we do in determining Anna’s Time of Death? List potential answers… Approximate time Glaister Equation: (98.4 – measured rectal death: temperature)/1.5 =ofapproximate hours since 11:00am – 4 hrs = death 7:00am The medical examiner measured Anna’s rectal temperature to be 92.4˚ at 11:00am. 98.4−92.4 = 4 hrs since death 1.5 Blood is powerful evidence! What can blood can tell us? What can blood splatter tell us? How can we determine if the blood at the crime scene was the result of an accident or foulplay Determine if blood at the scene was dropped from Anna’s height (indicating that she might have been struck) or from a lower height (indicating that she may have been hit while down or on her way down). Design an experiment to provide evidence for the case Determine if blood at the scene Dropped from Anna’s height Indicates… Dropped from a lower height Indicates… Design an experiment to provide evidence for the case AM CLASS PM CLASS What can be done at a scene of a mysterious death to help reconstruct what happened? How do the clues found at a scene of a mysterious death help investigators determine what might have occurred and help identify or exonerate potential suspects? How do scientists design experiments to find the most accurate answer to the question they are asking? How are bloodstain patterns left at a crime scene used to help investigators establish the events that took place during a crime? Biomedical Science Control Group Dependent Variable Experiment Forensic Science Hypothesis Independent Variable Negative Control Personal Protective Equipment Positive Control Lesson 1.1 Investigating the Scene Lesson 1.2 DNA Analysis Lesson 1.3 The Findings What is DNA? How do scientists isolate DNA in order to study it? How does DNA differ from person to person? How can tools of molecular biology be used to compare the DNA of two individuals? What are restriction enzymes? What are restriction fragment length polymorphisms? What is gel electrophoresis and how can the results of this technique be interpreted? Adenine Chromosome Cytosine Deoxyribonucleic Acid (DNA) Gel Electrophoresis Gene Guanine Helix Model Nucleotide Restriction Enzyme Restriction Fragment Length Polymorphisms (RFLPs) Thymine SFU Museum The Real Fugitive How can blood ID a suspect or victim? 1. 2. 3. 4. 5. 6. Genetic evidence is obtained The DNA is EXTRACTED The DNA is amplified by PCR Investigators cut the DNA in specific places called using RESTRICTION ENZYMES The size and number of the DNA fragments are visualized using GEL ELECTROPHORESIS The DNA evidence can be matched to a suspect’s DNA due to Restriction Fragment Length Polymorphism or RFLP Deoxyribonucleic Acid Hereditary material Nucleotides Sugar molecule Phosphate group Nitrogenous base ▪ A, T, C & G ▪ Sequence determines traits ▪ Form double helix Inheritance Disease Paternity Drugs/Medicine Crime Evolution Take a pic when you’re finished! 1. Genetic evidence is obtained (blood, saliva, hair) 2. The DNA is EXTRACTED 3. The DNA is amplified by PCR Investigators cut the DNA in specific places called using RESTRICTION ENZYMES The size and number of the DNA fragments are visualized using GEL ELECTROPHORESIS The DNA evidence can be matched to a suspect’s DNA due to Restriction Fragment Length Polymorphism or RFLP 4. 5. 6. How do scientists isolate DNA in order to study it? If all the DNA in our body was linked end-to-end, how long would the molecule be? Must EXTRACT the DNA from chromosomes and separate it from other materials inside cells We are going to extract DNA today! Follow directions CLOSELY- STEP BY STEP Cell lysis buffer- Lyse cell membranes Detergent- Break apart lipids and proteins Salt- Increase solute concentration OUTSIDE of the cell Baking soda- Sodium bicarbonate controls pH- it’s a “buffer” Ethanol- Less polar than water Adding ethanol to solution disrupts the charges by water If enough ethanol is added, the electrical attraction between phosphate groups and any positive ions present in solution becomes strong enough to form stable ionic bonds and DNA precipitation 1. 2. Genetic evidence is obtained (blood, saliva, hair) The DNA is EXTRACTED 3. The DNA is amplified by PCR 4. Investigators cut the DNA in specific places called using RESTRICTION ENZYMES The size and number of the DNA fragments are visualized using GEL ELECTROPHORESIS The DNA evidence can be matched to a suspect’s DNA due to Restriction Fragment Length Polymorphism or RFLP 5. 6. Amplifies the number of copies of a specific region of DNA, in order to produce enough DNA to be adequately tested Named after the enzyme, polymerase, which copies DNA in cells Completed in a thermal cycler. Used for: Medicalandbiologicalresearch Cloning Diagnosisofhereditarydiseases Identificationoffingerprints Forensic sciences Paternitytesting Diagnosisofinfectiousdiseases 1. 2. 3. Genetic evidence is obtained (blood, saliva, hair) The DNA is EXTRACTED (we’ve done this) The DNA is amplified by PCR 4. Investigators cut the DNA in specific places called using RESTRICTION ENZYMES 5. The size and number of the DNA fragments are visualized using GEL ELECTROPHORESIS With enough DNA…detection is possible Restriction Enzymes: Molecular scissors that cut DNA in specific location based on the code (A,T,C,G) Differences and similarities are exposed when they are cut in the same place 1. 2. 3. 4. Genetic evidence is obtained The DNA is EXTRACTED The DNA is amplified by PCR Investigators cut the DNA in specific places called using RESTRICTION ENZYMES 5. The size and number of the DNA fragments are visualized using GEL ELECTROPHORESIS 6. The DNA evidence can be matched to a Visulaize the DNA fragments and sort them according to size DNA samples are loaded into a gel and exposed to electrical currents The DNA fragments are then stained with a dye and can be observed as lines or bands in the gel 1. 2. 3. 4. Genetic evidence is obtained The DNA is EXTRACTED The DNA is amplified by PCR Investigators cut the DNA in specific places called using RESTRICTION ENZYMES 5. The size and number of the DNA fragments are visualized using GEL ELECTROPHORESIS 6. The DNA evidence can be matched to a 4. 5. 6. Investigators cut the DNA in specific places called using RESTRICTION ENZYMES The size and number of the DNA fragments are visualized using GEL ELECTROPHORESIS The DNA evidence can be matched to a suspect’s DNA due to Restriction Fragment Length Polymorphism or RFLP A B Restriction Enzymes Length Polymorphism = Difference in length of fragments Restriction Fragment Length Polymorphism (RFLP) http://users.rcn.com/jkimball.ma.ultranet/Bi ologyPages/R/RFLPs.html. B A We are going to go through these steps using evidence from our crime scene… Can we find our suspect? Good luck! Finish with a career journal on a DNA Analyst What is DNA? How do scientists isolate DNA in order to study it? How does DNA differ from person to person? How can tools of molecular biology be used to compare the DNA of two individuals? What are restriction enzymes? What are restriction fragment length polymorphisms? What is gel electrophoresis and how can the results of this technique be interpreted? Adenine Chromosome Cytosine Deoxyribonucleic Acid (DNA) Gel Electrophoresis Gene Guanine Helix Model Nucleotide Restriction Enzyme Restriction Fragment Length Polymorphisms (RFLPs) Thymine Lesson 1.1 Investigating the Scene Lesson 1.2 DNA Analysis Lesson 1.3 The Findings What is an autopsy and how can it be used to determine the cause of death? How can the manner of death be determined? Why is confidentiality of patient information important? Who should keep patient information confidential? Is there ever a time when patient confidentiality should be broken? What biomedical science professionals are involved in crime scene analysis and determination of manner of death? Autopsy Bibliography Citation Documentation Health Insurance Portability and Accountability Act (HIPAA) Medical Examiner Based on what we know thus far, what are some possible causes for the death of the woman? Brainstorm with evidence board Watch Dr. G: Tools of the Trade Do an autopsy online http://australianmuseu m.net.au/interactivetools/autopsy Complete 1.3.1 Organs are classified into systems (brainstorm!) Problems with one body system can have serious effects on others (brainstorm!) To diagnose a problem or determining cause of death many pieces of information must often be linked together before a conclusion can be reached HIPAA: Health Insurance Portability and Accountability Act 1996- standards for health care related electronic transactions mandates federal privacy protections for certain individually identifiable health information Professionals Must… Take all precautions necessary Not to speak about patients with any identifiable information with anyone other than other professionals working with the patient Not leave patient in public space unattended Avoid being overheard and limit shared information Professionals May… Disclose PHI to a family member or other person involved when the individual is present during the disclosure Communicate with patients regarding their health care, including through the mail or by the phone Leave messages with family members, on voice mail, etc. with patient consent Regulates how medical professionals and other people use and disclose certain individually identifiable health information (protected health information- PHI) Name, address, birth date, social security number, Past, present, future physical/mental health Health care services provided to the individual Past, present, or future payment 1. 2. 3. 4. 5. 6. 7. Payment of benefits or health coverage Public health Workman’s Comp Legal proceedings Law enforcement Unable to make medical decisions Disaster relief Assisting coroners or medical examiners Formal Case Report (I’ll give you a template) Introduction Summary of Findings Conclusion At least two figures: ▪ Inspiration ▪ Table ▪ Graph Careers Journals Medical Examiner Toxicologist Morgue Assistant 1. 2. 3. 4. 5. 6. What is an autopsy and how can it be used to determine the cause of death? How can the manner of death be determined? Why is confidentiality of patient information important? Who should keep patient information confidential? Is there ever a time when patient confidentiality should be broken? What biomedical science professionals are involved in crime scene analysis and determination of manner of death? Autopsy Bibliography Citation Documentation Health Insurance Portability and Accountability Act (HIPAA) Medical Examiner Study Guide Not for credit Just for you Portfolio Table of contents Check carefully Complete Exam Multiple choice (15%) Short answer (30%) Practical (30%) Essay (25%)