Biology 202 (001)- Molecular Biology and Genetics Summer Session I 2013 Dr. Blaire Steinwand Lectures: 107 Wilson Hall (MTWRF 9:45- 11:15 AM) Recitations: (you must be registered for one of the 2 sections: 601 and 602); attendance required. Section 601 - Artur Romanchuk Monday Tuesday Thursday 12:00-12:50pm 12:00-12:50pm 12:00-12:50pm GSB 1374 GSB 1374 GSB 1374 Section 602 - Eric Earley Monday Tuesday Thursday 1:00-1:50pm 1:00-1:50pm 1:00-1:50pm GSB 1374 GSB 1374 GSB 1374 Instructors: Dr. Blaire Steinwand Email: blairejs@email.unc.edu Office location: TBA Office Hours: Wednesday 1:00-3:15 and Fridays 1:15-3:30 You can also reach me by email to set up an appointment. TAs: Artur Romanchuk: romanchk@live.unc.edu Eric Earley: earleyej@email.unc.edu COURSE WEBSITE: http://sakai.unc.edu/ (you will need your onyen to log in) This site will have postings from my lectures such as outlines, power point slides, supplemental material that we mention in lecture. We will also post announcements on this site. It is your responsibility to check it regularly. TEXTBOOK: Genetic Analysis, Sanders and Bowman. ADDITIONAL REQUIREMENTS: Basic knowledge of biology and chemistry as demonstrated by a C or above in BIOL 101 and CHEM 101 or 102 or equivalent. COURSE GOALS: 1. To provide you with the core principles of genetics and molecular biology. The lecture and the book will provide the basic content. We will take a historical approach at times to see how famous experiments were performed. We will examine the basic “rules” of genetics that may then be altered to account for more complex situations. After this class, you will be prepared to do research in a lab on campus and to build upon this content with Biol 205 and upper level genetics courses. 2. To gain higher level thinking skills that are necessary for scientists. To the right you can see the “Amended Bloom’s Taxonomy” pyramid. It was developed as a method of classifying educational goals for student performance evaluation. You should be well –equipped at remembering facts and content with good study habits. We are looking for you to apply and analyze. You are UNC students, we KNOW you can memorize! Move beyond this level of thinking. How can we achieve this? We will have in-class questions to practice this immediately and you will have homework problems to practice on your own. We will also explore classic experiments as a way of thinking through the logic of experiments and to see where the foundations of this content come from. While these may be new ways of thinking for you, practice is the most important way to gain these skills. FYI: UNC’s medical school sees this is an excellent pre-req course for medical school because it teaches students to think. 3. This course should excite you about basic science and its applications. A foundation in genetic crosses with model organisms (basic science tool) allows you to understand human genetic diseases. A foundation in making recombinant DNA constructs (basic science tool) allows you to understand how plants are modified to be herbicide resistant or how recombinant proteins can be turned into medicines. Genetics and molecular biology provide the “tools” that other disciplines call upon in biological research. Plant biologists, evolutionary biologists, clinical researchers etc. all use these tools. COURSE POLICIES 1. Exams: Three semester exams and one final exam will be given. The final examination is cumulative. 80% of your grade will be determined by the 4 exams (20% for each exam). All students are expected to take all exams when they are scheduled. Students who are unable to take an exam must request permission to take a make‐up exam (possibly an oral exam). Students are expected to notify the instructor prior to missing an exam and to assume responsibility for scheduling a make‐up exam in a timely manner. If, for some reason, you feel an error has been made in determining an exam score, you may submit the exam for a re‐grade within 3 school days after the exam has been returned to the class. You must submit in writing your reasons for requesting a re‐grade. Staple the request to your exam, and give it to the appropriate instructor or TA. Legitimate reasons for a re‐grade request include, for example, incorrect summation of scores and bona fide errors in grading a particular problem; this does not include student judgments about the amount of partial credit deserved for incorrect answers. Written responses to student requests will be returned in class. 2. Recitation: Attendance and participation in one of the recitations sections is required and critical for success in this course. During recitation, you will be given an in‐class assignment or quiz, that is designed to reinforce and deepen your understanding of the lecture material. You will either work out a problem in groups and turn in one answer on behalf of the group or take quizzes individually during the recitation period. There will be no make-up opportunities for in-class assignments if you do not attend a recitation in a given week. In addition, The TAs will review questions you have about lecture material, homework problems, etc. during the recitation period. If you are unable to attend the recitation for which you are registered one week, you may attend another section with prior permission of the TAs if there is room in another section. There is a maximum capacity for each section so please do not assume that you can attend another section if you miss a recitation. 3. Grading: 60% (three semester exams worth 20% each) 20% (final cumulative examination) 10% (participation – includes required recitation attendance/participation and poll everywhere) 10% (homework via mastering) CLASSROOM PARTICIPATION (POLL EVERYWHERE): To ensure that you have done the reading assignments BEFORE class, you will have poll questions based on readings, as well as problems to solve during class. Each student must register for poll everywhere. See Sakai for registration and troubleshooting. Registration is free but required so that each answer can be linked to each student. It is the student’s responsibility to bring either their computer or cell phone to each class, there will NOT be an opportunity to regain points if you are absent. Of course, I cannot make you participate in class or attend each day, but I do believe that if you want to do well in this course, you WILL actively participate in your education! HOMEWORK: I expect you to do the guided reading assignment BEFORE class each day. In the past, students have found these to be very helpful. They will guide you to the important concepts in the chapter – use them! In addition, each week you will complete a Mastering Genetics homework assignment. These will be due every Sunday by 11:55pm. Although some assignments may be quicker than others, you will be responsible for starting them so that you can finish on time. Late homework assignments will be given a zero. HONOR CODE: All work done in this class must be carried out within the letter and spirit of the UNC Honor Code. You must sign a pledge on all graded work certifying that no unauthorized assistance has been given or received. You are expected to maintain the confidentiality of examinations by divulging no information about any examination to a student who has not yet taken that exam. You are also responsible for consulting with your professors if you are unclear about the meaning of plagiarism or about whether any particular act on your part constitutes plagiarism. Please talk with the professor if you have any questions about how the Honor Code pertains to this course. Copyright Information: All materials used in this course including notes, tests and assignments are covered by copyrights, which forbid you from sharing class materials with any group. The University’s Copyright Policy, which can be found at http://www.unc.edu/campus/policies/copyright%20policy%2000008319.pdf indicates "STUDENT WORKS THAT CONSTITUTE NOTES OF CLASSROOM AND LABORATORY LECTURES AND EXERCISES SHALL NOT BE USED FOR COMMERCIAL PURPOSES BY THE STUDENT GENERATING SUCH NOTES." What this means is that you are in violation of the law (and the honor code) if you post/text/share any course materials for use by others. Lecture Schedule: Date Lecture # To be completed BEFORE this lecture Topics covered 05/14 Tuesday 1 Read articles (Personalized medicine, Born to Run, and Genetic testing for sports genes courts controversy) posted on Sakai. Personal genomics 05/15 Wednesday 2 Reading posted on Sakai Genetic variation 05/16 Thursday 3 None! Structure and function of genes and genomes 05/17 Friday 4 Guided reading Qs on Ch. 7 DNA replication 05/20 Monday 5 Guided reading Qs on Ch. 8 Transcription 05/21 Tuesday 6 Guided reading Qs on Ch. 9 Translation 05/22 Wednesday Exam 1 Includes material from May 14 – May 20 05/23 Thursday 7 Guided reading Qs on Ch. 14 Prokaryotic gene regulation 05/24 Friday 8 Guided reading Qs on Ch 15 Eukaryotic gene regulation 05/27 Monday No Class Memorial Day! 05/28 Tuesday 9 Activity- Lick your rats! NOVA video - Epigenetics 05/29 Wednesday 10 Guided reading Qs on Ch 2. How genes affect phenotypes (Mendelian genetics) 05/30 Thursday Exam 2 Includes material from May 21- May 28 05/31 Friday 11 Guided reading Qs on Ch. 4 Dominance relationships 06/03 Monday 12 Guided reading Qs on Ch. 12 Genetic variation arises by mutation 06/04 Tuesday 13 Guided reading Qs on Ch. 3 Genetic Variation also arises by chromosomal rearrangements and homologous recombination 06/05 Wednesday 14 Video on genetic counseling on Sakai Using inheritance to investigate gene action 06/06 Thursday 15 Guided reading Qs on Ch. 4 Epistasis 06/07 Friday 16 None. Cont. 06/10 Monday Exam 3 Includes material from May 29 – June 6. 06/11 Tuesday 17 Guided reading Qs on Ch. 5 Linkage 06/12 Wednesday 18 Guided reading Qs on Ch. 3 Sex linkage 06/13 Thursday 19 Guided reading Qs on Ch. 22 Population genetics 06/14 Friday 20 CUMULATIVE FINAL EXAM: June 17th 8:00am-11am TBA TIPS FOR SUCCESS: Please read the assigned textbook pages twice! Read once before the lecture, look over the text to familiarize yourself with what you will hear during the lecture. Go back to the reading assignment after the lecture and re-read the portions that were stressed during lecture. The lecture material is the number one source of exam questions. This is where you want to invest time for detailed understanding. Recognize that your attendance at the lectures is the only way to clearly grasp what we stress, because we also present topics and material that are not necessarily in the book. Take notes in class; reinforce what you learned. Learning is an active process. If you get confused during a lecture, mark in your notes the point during the lecture where you became confused. Mark in your notes the point where your understanding returned (i.e. change of topic or new topic). This will allow you to clearly identify that part of the lecture that you did not understand. Then go back to the assigned reading and seek clarification. Immediate reinforcement is most effective directly after hearing the lecture. So, instead of leaving the lecture hall and immediately checking your cell phone for messages, think calmly to yourself as you walk to your next class “What are the main take home messages from today’s lecture?” Cramming is unlikely to be successful. Trust us. Ask questions and participate in recitations! Raise your hand, be engaged! Ask for clarifications from the lecture material; come to office hours, study with other students. Discussions help reinforce the material we learn. Do the homework. It is much more useful to try to work out the homework problems before you know the answers. This will help you realize what aspects of the material you are weak in, and the process of trying to work out the answers will greatly help in your understanding and retention of the material. A portion of the exam questions will be similar to the homework questions. So make sure you understand the answers. Do extra problems. More practice thinking in this way will make a difference.