Recombinant Human Thrombomodulin Suppresses Experimental Abdominal Aortic Aneurysms Induced by Calcium Chloride in Mice (Supplementary Data) Chao-Han Lai, MD1,2,4, Guey-Yueh Shi, PhD2,3, Fang-Tzu Lee, MS2,3, Cheng-Hsiang Kuo, PhD2,3, Tsung-Lin Cheng, PhD2,3, Bi-Ing Chang, MS2,3, Chih-Yuan Ma, PhD2,3, Fu-Chih Hsu, MS2,3, Yu-Jen Yang, MD, PhD2,4, Hua-Lin Wu, PhD2,3 From the 1Institute of Clinical Medicine, 2Cardiovascular Research Center, 3Department of Biochemistry and Molecular Biology, and 4Department of Surgery, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan, Taiwan 1 SUPPLEMENTARY METHODS Assays for rTMD123-HMGB1 interaction For co-immunoprecipitation assay, aortic homogenates obtained 3 days after AAA induction were co-incubated with c-myc tagged rTMD123 (50 g), rabbit anti-HMGB1 polyclonal antibody (Abcam, Cambridge, MA), and protein A agarose beads (Millipore, Billerica, MA) overnight at 4C in immunoprecipitation buffer (50 mM Tris-HCl, 150 mM NaCl, 1% NP-40, and 1 mM PMSF; final volume: 500 l). Rabbit IgG antibody was served as a negative control. Beads were washed with phosphate-buffered saline (PBS) containing 0.05% Tween-20 three times and the immune precipitates were analyzed using western blot analysis followed by immunoblotting with mouse anti-c-myc monoclonal antibody (Santa Cruz Biotechnology, Santa Cruz, CA). For analyzing the binding ability of HMGB1 to THP-1 cells, THP-1 cells were co-incubated with human recombinant HMGB1 protein (R&D systems, Minneapolis, MN) and rTMD123 for 30 min at 4C. Cells were washed with ice-cold PBS three times, stained with Alex Fluor 488-conjugated goat anti-rabbit polyclonal antibody (Invitrogen, Carlsbad, CA) for 30 min at 4 C, and then were stained with rabbit anti-HMGB1 polyclonal antibody for 30 min at 4C. Cells were analyzed by fluorescence-activated cell sorting (FACS; BD Biosciences, San Jose, CA). The geometric mean fluorescence intensity was determined by WinMDI 2.9 software. Quantification for proinflammatory mediators and MMPs in the aortic wall The levels of HMGB1 and RAGE in the aortic wall were analyzed using western blot analysis. Equal protein amounts of mouse aortic homogenates were resolved on 10% SDS-PAGE gels and were transferred to nitrocellulose by electroblotting. The membrane was blocked with Tris-buffered saline and Tween containing 5% nonfat dry milk to prevent nonspecific antibody binding. After being probed with appropriate dilution of antibodies against RAGE (Santa Cruz Biotechnology) and HMGB1 (Abcam) overnight at 4°C, the 2 membrane was incubated with a horseradish peroxidase-conjugated secondary antibody for 1 hour at room temperature. The signal was detected using an enhanced chemiluminescence reagent (Amersham Phamacia Biotech, Piscataway, NJ). The band intensity was quantitatively determined using Gel-Pro Analyzer software. Blots were reprobed with β-actin (Sigma-Aldrich, St Louis, MO) to confirm equal protein loading. Mouse aortic homogenates were also analyzed using commercially available ELISA kits specific for mouse TNF-α (R&D systems), IL-6 (R&D systems), MCP-1 (R&D systems), total MMP-9 (Abnova, Heidelberg, Germany) and total MMP-2 (Abnova) according to the manufacturers’ protocols. Each of these assays uses a dual-antibody method with a reported sensitivity of 3.9 pg/mL. The amount of each protein in each sample was measured by spectrophotometric optical density (450 nm) using an automated microplate reader (SpectraMax 340PC384; Molecular Devices, Sunnyvale, CA). SUPPLEMENTARY FIGURE LEGENDS SUPPLEMENTARY FIGURE 1. A, rTMD123 can interact with HMGB1 in the aorta. Fifty-μg rTMD123 protein (tagged with c-myc), rabbit anti-HMGB1 antibody, and protein A beads were added in the aortic homogenates (obtained on day 3) overnight at 4C. Rabbit IgG antibody (IgG) was served as a negative control. Beads were washed thrice with PBS containing 0.05% Tween-20 and the immune precipitates were analyzed by western blot. The result is typical of those obtained in 3 independent experiments. B, rTMD123 inhibits HMGB1 binding to THP-1 cells in a concentration-dependent manner. THP-1 cells were co-incubated with recombinant HMGB-1 protein and rTMD123 for 30 min at 4C. Cells were washed, stained with rabbit-anti HMGB-1 antibody for 30 min at 4C, and were stained with Alexa Fluor 488-conjugated goat anti-rabbit antibody for 30 min at 4C. Cells were analyzed by FACS. The geometric mean fluorescence intensity was determined by WinMDI 3 2.9 software (n=3). (**P<0.01 compared with untreated group. #P<0.05 compared with HMGB1-treated group.) SUPPLEMENTARY FIGURE 2. rTMD123 attenuates HMGB1-induced MMP-9 in differentiated THP-1 cells. A, activities of MMP-9 and MMP-2 were assessed after HMGB1 treatment for 24 hours (n=4). B, MMP-9 activity was assessed after sRAGE pretreatment for 1 hour and HMGB1 treatment for 24 hours (n=4). C, MMP-9 activity was assessed after rTMD123 pretreatment for 1 hour and HMGB1 treatment for 24 hours (n=4). (All activities were assessed by gelatin zymography. *P<0.05, **P<0.01, n.s. P>0.05 compared with untreated group. #P<0.05 compared with HMGB1-treated group.) SUPPLEMENTARY FIGURE 3. Histological analysis for aortic samples obtained on day 7 showed that rTMD123 treatment attenuates macrophage infiltration in the aortic wall (A) and apoptosis in the media (B) preceding AAA formation. (P=AAA-PBS, rTM=AAA-rTM. *P<0.05, ***P<0.001 compared with sham. #P<0.05, ###P<0.01 compared with AAA-PBS. L indicates lumen. All scale bars represent 100 μm. White arrows indicate examples of MOMA-1-positive, DAPI-stained macrophages. Red arrows indicate TUNEL-positive cells.) SUPPLEMENTARY FIGURE 4. Aortic samples obtained on day 28 showed that rTMD123 treatment reduces the activities of MMP-9 and MMP-2 in the aortic wall measured by gelatin zymography (n=4). (P=AAA-PBS, rTM=AAA-rTM. **P<0.01 compared with sham. #P<0.05 compared with AAA-PBS.) SUPPLEMENTARY FIGURE 5. Treatment with rTMD123 preserves elastin integrity and SMCs in the aortic wall 28 days after AAA induction. A, medial elastin degradation (n=6). 4 Elastin degradation grading scales (4 grades) by VVG staining are indicated in right panels (Blue arrows indicating disrupted elastic lamella). B, SMC content (n=6). SMC content grading scales (4 grades) by α-SMA staining are indicated in right panels. (P=AAA-PBS, rTM=AAA-rTM. **P<0.01, ***P<0.001 compared with sham. #P<0.05 compared with AAA-PBS. L indicates lumen. All scale bars represent 50 μm.) 5