Biology AH Extra notes Side 1 Membranes Phospholipids are important components of all cell membranes. Phospholipid Molecule Simplified Drawing Phospholipids are made up of two fatty acid chains joined to a polar phosphate containing head. The head is hydrophilic (water loving) and the tail is hydrophobic (water hating). Cut out the phospholipids on the next page and do the following with them: On a piece of scrap paper draw a line across the middle. This line represents the surface of some water. Imagine that you picked up a bunch of phospholipid molecules and dropped them onto water. Position the phospholipids on the paper as you think they would arrange themselves. Imagine that you now stirred the water vigorously and all the phospholipids are submerged. Position the phospholipids on the paper as you think they would arrange themselves (This structure is known as a micelle). Imagine if you had an unlimited number of phospholipids and they had to enclose an object that contained water and then submerged in water. Position on the paper how you think the phospholipids arrange themselves? Look at the diagram of a phospholipid bilayer on side 3. Construct one of these on your sheet of paper and label all the components. Mrs Dow Biology AH Mrs Dow Extra notes Side 2 Biology AH Extra notes Side 3 2.4.1 Draw and label a diagram to show the structure of membranes. http://telstar.ote.cmu.edu/Hughes/tutorial/cellmembranes/orient2.swf http://wps.prenhall.com/esm_freeman_biosci_1/0,6452,498450-,00.html All cells have a membrane at their boundary that acts as a selective barrier, thereby regulating the cells chemical composition. This membrane is known as the plasma membrane. Membranes are also found inside eukaryotic cells (remember prokaryotic cells do not have membrane bound organelles) as part of membrane bound organelles. The plasma membrane and membranes found within a cell are only about 7-10nm in diameter. This makes them extremely difficult to see in detail. Many models were proposed by scientists and the presently accepted model is known as the fluid mosaic model. Mrs Dow Biology AH Extra notes Side 4 http://telstar.ote.cmu.edu/Hughes/tutorial/cellmembranes/img/fig8-5.jpg Mrs Dow Biology AH Extra notes Side 5 Using information from the diagram: Name the three biochemical groups that make up membranes. Name a cellular organelle that possesses a membrane and describe the function the membrane has in that organelle. Name three other organelles made up from a system of membranes. State the purpose of cholesterol in the membrane. Suggest why organisms living in Polar regions have a high proportion of cholesterol in their membrane. Use the symbol for a phospholipid shown below to draw a simplified labeled diagram. Phospholipid Mrs Dow Biology AH Extra notes Side 6 2.4.2 Explain how the hydrophobic and hydrophilic properties of phospholipids help to maintain the structure of cell membranes. http://telstar.ote.cmu.edu/Hughes/tutorial/cellmembranes/bil.swf dynamic nature of phospholipids It is the hydrophilic nature of the heads and the hydrophobic nature of the tails that keeps the structure of the bilayer. There are no strong bonds holding the phospholipids together. Instead they can float around freely as long as their heads point out and their tails point in. A phospholipid bilayer is very fluid – objects can move around in it very easily. The membranes that are found surrounding and within cells are made up of a phospholipid bilayer with objects floating around within the phospholipids. Objects that are found within the phospholipid bilayer include proteins and cholesterol molecules. It is often likened to a sea with icebergs floating in it. The model that is used to describe the structure of membranes is known as the fluid mosaic model. Why do you think that it is given this name? Thinking about Science: Models of Membrane Structure This fluid mosaic model was developed in the 1970’s by Singer- Nicholson. According to the model the phospholipids and proteins are like pieces of a mosaic that can rotate and move sideways. They cannot move from one half of the bilayer to the other. This model explains most, but not all of the research findings about membranes. These findings do not support the model: Some of the lipids in the membrane are grouped into rafts Some proteins are associated with specific areas of phospholipids in the membrane and are not free to move to other areas of the membrane Some membrane proteins are anchored to other membrane proteins and are therefore not free to move Some membrane proteins which act as receptors are arranged in specific patterns Discussion In groups discuss the following points: In this case, the word model is used to mean a type of hypothesis. What is the advantage of a model rather than a written hypothesis What should a scientist do after a model or hypothesis has been developed? How should we treat this model in the light of findings that do not fit in with the model? Mrs Dow Biology AH Extra notes Side 7 2.4.3 List the functions of membrane proteins. Hormone Binding Sites Some proteins in the membrane will act as sites for hormones to bind called receptor sites. Name 3 Hormones: For each of the hormones above, name a cell that would probably have a protein that acts as a receptor site for that hormone. Enzymes Some proteins will act as enzymes. If you recall from IGCSE enzymes are molecules that are made from protein. Enzymes are biological catalysts. These enzymes which are fixed into the membrane are known as immobilized enzymes. Examples may include enzymes immobilized into the membranes lining the small intestine. Many organelles that have lots of chemical reactions taking place inside them will also have enzymes immobilized into their membranes. Name two organelles that you think will have proteins in their membranes that are acting as enzymes. Cell Adhesion Some proteins act to form tight junctions between cells in a tissue. These proteins form part of the extracellular matrix. Channels for passive transport These allow hydrophilic particles to diffuse into and out of the cells by a process called facilitated diffusion (this will be covered on the next few pages) Pumps for Active Transport These use energy in the form of ATP to move substances into or out of a cell against a concentration gradient (moving from low to high). Mrs Dow Biology AH Extra notes Side 8 The diagram below shows various proteins in a membrane. Discuss in pairs what you think each protein is doing and label these onto the diagram. 2.4.4 Define diffusion and osmosis. Diffusion is the movement of a substance from an area where it is present in a high concentration to an area where it is present in a lower concentration. This is a form of passive transport, as it does not require energy. Moving from a high concentration to a low concentration is known as moving down the concentration gradient. T:\Year groups\12\B\Syllabus 2007\ diffusion[1].swf Define the term passive: Why does diffusion occur? Where does the energy come for this process? Mrs Dow Biology AH Extra notes Side 9 List two factors that you think will affect the rate of diffusion for each one explain why it will affect the rate of diffusion. Factor Why it affects the rate of diffusion Osmosis Osmosis is the passive movement of water molecules from a region of lower solute concentration to a region of higher solute concentration across a partially permeable membrane. (A partially permeable membrane describes all cell membranes; it will allow small molecules such as water to freely pass through but not larger molecules such as glucose) Solute is the term used to describe a substance, which is dissolved in a solvent. Give three examples of solutes that would be dissolved in the solvent water: ____________________ ____________________ ____________________ Osmosis is not the movement of water molecules from a region of higher concentration to a region of lower concentration. Mrs Dow Biology AH Extra notes Side 10 Look at the diagram below: Which side of the membrane has the most water molecules? What do the solute molecules do to the water molecules? Which side has the highest concentration of water molecules that are free to move? In which direction will osmosis take place? Mrs Dow Biology AH Extra notes Side 11 2.4.5 Explain passive transport across membranes by simple diffusion and facilitated diffusion. Simple diffusion across membranes involves particles passing between the phospholipids in the membrane. It can only happen if the phospholipid bilayer is permeable to the particles. If you remember the fatty acid tails of a phospholipid molecule are hydrophobic, therefore the centre of the phospholipid bilayer will be hydrophobic. Label the hydrophobic part of the phospholipid membrane in the diagram above. Because the centre of the phospholipid membrane is hydrophobic ions with positive and negative charges cannot easily pass through. Polar molecules with very small charges can pass through but at low rates. Small particles can pass through more easily than larger molecules. The diagram above shows the simple diffusion of oxygen through a phospholipid bilayer. For a typical animal cell the concentration of oxygen outside the cell is high. Label the outside and inside of the cell on the diagram Draw an arrow to indicate in which direction the oxygen molecules will diffuse. Use one word to describe the movement of the oxygen molecules. Explain why there is an arrow showing the movement of oxygen out of the cell. Mrs Dow Biology AH Extra notes Side 12 A diagram to summarise simple diffusion across the phospholipid bilayer: Large particles and ions have a problem moving across the phospholipid bilayer. Because of their charge or size they carry they cannot enter the uncharged region of the membrane where all the phospholipid tails are. Instead they must diffuse through special channel proteins or be transported across the membrane by carrier proteins. Watch the animation about channel proteins and then draw and label a diagram to explain diffusion using channel proteins. T:\Year groups\12\B\Syllabus 2007\ channel[1].swf The diameter and chemical properties of the channel ensure that only one type of particle can pass through, for example potassium ions or sodium ions but not both. Mrs Dow Biology AH Extra notes Side 13 Watch the animation about carrier proteins and then draw and label a diagram to explain diffusion using carrier proteins. T:\Year groups\12\B\Syllabus 2007\caryprot[1].swf This differs from the charge lined channel proteins because there is a conformational change in the shape of the carrier protein. The channel proteins found in the membrane have a binding site which is designed to fit onto a specific molecule. Once they have combined with the appropriate molecule they flick it across to the other side of the membrane. Note using channel or carrier proteins are different from simple diffusion because they involve the use of a protein found in the membrane. The word ‘facilitate’ means to help. Cells can control which type of channel proteins and carrier proteins are found in their membranes as well as the number of each type. In this way cells are able to control which substances can diffuse into and out of cells. The rate of diffusion for a certain type of molecule into or out of a cell can be speeded up by increasing the number of carrier or channel proteins that cell has in its membrane. Compare the processes of simple and facilitated diffusion. (Note the word compare means that you can include both similarities and differences) Mrs Dow Extra notes Side 14 Biology AH 2.4.6 Explain the role of protein pumps and ATP in active transport across membranes. Diffusion alone cannot supply the cell with all of its requirements. Some molecules are required by the cell in higher concentrations than occur outside the cell. Others like sodium must be removed from the cell in order that fluid balance is maintained. A difference in concentration of a substance between two areas is known as a concentration gradient. When substances move from a high to a low concentration they are said to have moved down the concentration gradient. Therefore in diffusion substances move down the concentration gradient. High concentration Substances move down the concentration gradient Active transport involves moving substances across a membrane up a concentration gradient, i.e. from a low to a high concentration. This process requires energy and is therefore an active process. Energy is supplied in the form of ATP. ATP (adenosine triphosphate) is the molecule that supplies energy to cells. It is made up of adenosine (a base and sugar) and three phosphate groups. When ATP releases one of its phosphate groups it also releases energy, it is this energy that is used for transporting substance across the membrane against a concentration gradient. + energy Adenosine triphosphate Mrs Dow Adenosine diphosphate Extra notes Side 15 Biology AH Specific proteins found in the membrane called pumps carry out active transport. These proteins harness the energy from the breakdown of ATP and use it to pump substances from a low to a high concentration. These proteins bind with their specific substances on one side of the membrane only, the protein then changes shape or moves within the membrane to transport the substance across the membrane. Watch the animation about active transport and then draw and label a diagram to explain active transport using protein pumps. T:\Year groups\12\B\Syllabus 2007\atpase[1].swf Questions on Active Transport 1. How does active transport a. Resemble b. Differ from facilitated diffusion? 2. The data in the table below show the relative uptake of glucose and xylose (a 5 carbon sugar) from living intestine and from intestine that had been poisoned with cyanide. Cyanide greatly reduces the availability of ATP. Discuss these data. Relative rate of uptake by intestine 3. Sugar Without cyanide With cyanide Glucose 100 28 xylose 18 18 What factors will affect the rate of active transport? Mrs Dow Extra notes Side 16 Biology AH 4. Roots were cut off from barley plants and were used to investigate phosphate absorption. Roots were placed in phosphate solutions and air was bubbled through. The phosphate concentration was the same in each case, but the percentage of oxygen and nitrogen was varied in the air bubbled through. The rate of phosphate absorption was measured. The table below shows the results. Oxygen / % Nitrogen / % Phosphate absorption /µmolg-1h-1 0.1 99.9 0.07 0.3 99.7 0.15 0.9 99.1 0.27 2.1 97.1 0.32 21.0 79.0 0.33 a. Describe the effect of reducing oxygen concentration below 21.0% on the rate of phosphate absorption by roots. You should only use information from the table to answer this question. b. Explain the effect of reducing the oxygen percentage from 21.0 to 0.1 on phosphate absorption. Mrs Dow Biology AH Extra notes Side 17 2.4.7 Explain how vesicles are used to transport materials within a cell between the rough endoplasmic reticulum, Golgi apparatus and plasma membrane. 2.4.8 Describe how the fluidity of the membrane allows it to change shape, break and re-form during endocytosis and exocytosis. Recap on active transport and intro to endo and exo T:\Year groups\12\B\Syllabus 2007\actandendo1049_300k[1].asx The endoplasmic reticulum is a network of flattened sacs that originate from and is continuous with the outer membrane of the nucleus. Proteins are synthesized on ribosomes that are attached to the surface of the rough endoplasmic reticulum Many proteins synthesized on the rER need to have additional groups added or will need to be packaged so that they can be sent to a certain area within the cell or out of the cell. The Golgi apparatus does all these jobs. T:\Year groups\12\B\Syllabus 2007\cytosis[1].swf The transporting of proteins from the rER to the Golgi apparatus and then either within or out of the cell takes place in membrane bound sacs called vesicles T:\Year groups\12\B\Syllabus 2007\vesiclebudding[1].swf Cells have a mechanism for moving packets of materials into and out of cells. This process is different from diffusion and active transport that are concerned with moving single ions or molecules into or out of cells. To move materials out of the cells such as proteins, a membrane bound vesicle that can fuse with the cell surface membrane and empty their contents out of the cell surrounds the proteins. To move materials into the cell the cell surface membrane invaginates to enclose the material and then that part of the membrane buds off to form a vesicle. Mrs Dow Biology AH Extra notes Side 18 The breaking and reforming of the cell surface membrane requires energy therefore endocytosis and exocytosis are _______________ processes. Mrs Dow Biology AH Extra notes Side 19 Question on 2.4.7 and 2.4.8 The diagram below shows part of an animal cell and is based on a series of electron micrographs. a. Name the structures labeled A, B, C, D and E. b. Label with the letter F, a structure where the protein contents of D are synthesized. c. What is the part played by E in the synthesis of the protein? d. Name the process illustrated in the diagram, which results in large particles entering the cell. e. This process is common in some types of white blood cell. Suggest one reason why this cell activity is important to the body. f. Name one group of organisms which feed using the process illustrated in the diagram. Mrs Dow Mrs Dow Type of particles that are moved? Specific or nonspecific? Down or up the concentration gradient? Force driving the process Type of membrane molecule involved Feature Simple Diffusion Facilitated Diffusion Osmosis Active Transport Transport Methods Across Cell Membranes - Summary Endo / Exocytosis Biology AH Extra notes Side 20 Biology AH Summary Diagram for Cell Transport Processes Mrs Dow Extra notes Side 21 Biology AH Extra notes Side 22 Task – In and out of cells This task will involve reorganizing facts about the movement of substances into and out of a cell. You have to cut out the facts and then sort them out and rewrite them into a logical account. One of the aims of this task is to help you to practice writing an essay, concentrating on its structure and quality of English without having to worry too much about the content. The idea is not to find a correct sequence and copy out the sentences word for word, but to produce your own individual piece of writing. You may not understand all the statements below and will have to use textbooks and other reference material. Information relevant to diffusion, osmosis, facilitated diffusion and active transport. Active transport requires energy from cell metabolism. All animal cells have sodium-potassium pumps in the plasma membrane Gases and other small uncharged molecules diffuse across the plasma membrane. Ions diffuse down an electrochemical gradient as well as down a diffusion gradient. Ions do not easily pass through the hydrophobic part of the membrane. Molecules that are too large to diffuse through the phospholipid bilayer may diffuse through protein channels Passive transport is movement of substances down a concentration gradient. Small lipid soluble molecules such as steroid hormones diffuse through the phospholipid bilayer. The change in the shape of the carrier protein causes the molecule to be taken through the protein to the other side of the membrane. The charge across the membrane affects the diffusion of ions. The phospholipid bilayer is not very permeable to monosaccharides. There are different proteins for different molecules or ions. These methods transport individual molecules or ions into out of cells. The sodium-potassium pump uses energy from ATP to transport potassium into and sodium out of the cell. To move a substance against a concentration gradient, a cell must use energy. Carrier proteins change shape when the substance to be transported binds. Carrier and channel proteins have a specific structure which gives the molecule a distinctive shape. Carrier proteins have a specific binding site. Proteins may form hydrophilic channels through the membrane. Carrier and channel proteins span the membrane. Water diffuses from a high solute to a low solute gradient. Water is small enough to pass between the phospholipid molecules The movement of water across a partially permeable membrane is known as osmosis Mrs Dow Biology AH Extra notes Side 23 The sentences below give information relevant to endo and exocytosis A bacterium is engulfed in a pocket of plasma membrane which then breaks off and forms a vacuole with the bacterium inside. A small pocket appears in the plasma membrane which is then pinched off to form a vesicle inside the cell. Endocytosis includes phagocytosis and pinocytosis Large molecules such as proteins, are transported out of cells by exocytosis. Macromolecules and larger particles, such as bacteria, are taken into the cell by endocytosis. Pinocytosis is similar to phagocytosis, but pinocytosis takes in small droplets of the external solution, forming vesicles. The vesicle membrane fuses with the plasma membrane. This is a means of moving substances in bulk into or out of the cell. Vesicles containing proteins for export break away from the golgi apparatus. Vesicles migrate to the plasma membrane. Mrs Dow Biology AH Membranes Phospholipids Extra notes Side 24 IB Statements: 2.4.1 – 2.4.3, 2.4.8 Phospholipid Bilayer Membranes consist of a _______________, with molecules ___________ in and _________________ to it. ___________________ pack together to avoid contact with water ___________________ orient towards water to form H-bonds Membrane Stucture Bilayer prevents passage of _________________ substances through the membrane (e.g. ______________, _______________) ____________________ extend through the membrane to enable these molecules to pass Functions of Membrane Proteins Membrane proteins have a variety of functions. These include Fluidity of Membranes Phospholipids in membrane are in a ____________ state. Fluidity allows vesicles to be _______________ from membrane or _______________ with it. Mrs Dow Extra notes Side 25 Biology AH Transport Across Membranes Passive Transport IB Statements: 2.4.4 – 2.4.8 Osmosis Particles move ______________ conc. Gradient. Requires __________ energy Diffusion is the movement of particles from a region of Is the movement of ________________ from a region of _____________________ to a region of __________________ across a ____________________________. ____________________ to a region of ______________ as the result of ___________ motion of particles. Active Transport Particles move ______________ conc. Gradient. _________ Diffusion ____________ Diffusion __________ energy 1. Particle ______________ pump Transport by Vesicles 2. Particle _____________ to _____________ site 3. Energy from _________ used to change _____________ of pump 4. Particle is ______________, then pump returns to original _____________________ Mrs Dow