VCE Biology TSFX REVISION LECTURE UNIT 3 Part 1 Veronica Parsons 2015 Cells Biochemistry Biomolecules Area of Study 1 Unit 3: Signatures of Life Immune System Coordination & Regulation Area of Study 2 v Pathogens Revision‐What Can you Do? • Lecture today-Listen! • Past VCAA Exams from Website Going Backwards from 2014 including Sample. Keep Notebook Close by divided into 4 sections for each area of Study-write down theory from questions you are getting wrong • Read over TSFX notes with highlighter regularly. • Study Groups-Make Kahoots • Teach someone! Exam Horror Stories Exam Horror Stories Exam Horror Stories 2014 Exam Horror Stories Exam Horror Stories Drawing or Labelling a Plasma Membrane A B C D Exam Horror Stories What to Learn from these Horrors??? • • • • • • • • • Avoid one word answers for one mark questions Use the word ‘whereas’ in comparative statements Use the word ‘so’ twice in an explain question. Draw simple, big, clearly labeled diagrams Use data to support your answers Read questions very carefullylook for distractors! One dot point per mark + one for luck Ask yourself..”what is the intention of the question” Be positive-use the exam as an opportunity to show them how much you know and how hard you have worked. Practice Exam Question Which of the following combination of polysaccharides and function is correct: a. b. c. d. Read each word very carefully! Chitin: Structural component of cell membranes. Cellulose: Energy store Starch: structural component of plant cell walls Glycogen: Store of energy. Veronica Parsons 2013 If a cell could talk??? I exist in this watery world because I have an insoluble selectively permeable membrane I need to receive inputs, remove wastes & export products I need to make essential biomacromolecules (by condensation) You think you have a management problem! (talking about biology teachers). I need to control & regulate a host of simultaneous reactions that are energy dependent. Provide a constant supply of reactants and export a constant supply of products. I need to know everything. I need to receive signals and respond. I need to divide, copy accurately and pass on my information manual to my daughter cells. Most of the time I get it right, but sometimes things go wrong. https://www.youtube.com/watch?v=oqGuJhOeMek The cell is a bag of molecules Pg 15 Water‐a unique molecule • Water is the most abundant compound in our bodies • Water is the most common solvent (dissolves solid, liquid, or gaseous solutes, resulting in a solution) in everyday life. • Substances that dissolve readily in water are called hydrophilic or polar. “Like dissolves Like” “Polar dissolves Polar” “Non Polar dissolves Non Polar” Pg 18 Biological Hierarchy Pg 18 Organic vs Inorganic organic means that a molecule has a carbon backbone, with some hydrogens thrown in for good measure. Living creatures are made of various kinds of organic compounds. Eg: Carbohydrates, Lipids,Proteins, Nucleic Acids, Coenzymes eg ATP Inorganic molecules are composed of other elements. They can contain hydrogen or carbon, but if they have both, they are organic.Eg, H2O, CO2, O2, Cofactors Pg 19 Organic Molecules Organic Molecule Elements Monomer or Subunit Polymer or larger unit Carbohydrate C H O Monosacchari de Glucose, Ribose Polysaccharide Eg Starch, s Glycogen, Cellulose, Chitin ProteiNS C H O N (S) Amino Acid (20) Polypeptides Proteins Lipid C H O (P) Fatty Acid Nucleic Acid CHONP Nucleotide Veronica Parsons 2015 Examples Enzymes, Hormones, Antibodies Neurotransmit ters Phospholipids, Cholesterol. Tryglycerides. Hormones Nucleic Acids DNA, mtDNA, tRANA, rRNA, mRNA Diagrammatic Representations of Molecules Veronica Parsons 2015 VCAA 2006 Veronica Parsons 2015 Pg 20 Synthesis of biomacromolecules through the Condensation Reaction • Making Polymers is Wet Work! • Condensation (water releasing) makes bonds. • Loss of OH from one monomer and H from another results in overall loss of one water molecule in forming the bond • Anabolic‐building up reactions eg protein synthesis Veronica Parsons 2015 FAQ’s • Students are expected to recognise diagrammatic representations of glucose, identify glucose as a monomer of polysaccharides and other carbohydrates, and understand the mechanism of the condensation reaction (that is, a water molecule is lost when a monomer is added to another monomer or a polysaccharide structure). Veronica Parsons 2015 Pg 21 Glucose Glucose is created in the process of photosynthesis and is used in the process of cellular respiration. Polysaccharides Veronica Parsons 2015 Pg 26 FAQ’s • For lipids, students are expected to recognise diagrammatic representations of fats (triglycerides) and phospholipids, and identify the role of phospholipids in the cell membrane. Students should understand that the formation of triglycerides involves condensation reactions. Although the role of cholesterol in the plasma membrane should be understood, the specific chemical structure of cholesterol is not required. Veronica Parsons 2015 Lipids Triglycerides • • • • Fats & Oils-saturated fats & unsaturated fats Triglycerides have three fatty acid molecules attached to a single glycerol molecule. Formation involves Condensation Reactions. Functions include o o o insulation layers which resist heat loss or gain Energy storage Buoyancy for aquatic animals. Veronica Parsons 2015 Phospholipids Structural backbone of membranes. Phospholipids have two fatty acids attached to a glycerol. Pg 26‐Functions of Lipids‐ SHIP Function of Lipids • Lipids can serve many functions within the cell, including: • Storage of energy for longterm use (e.g. triglycerides) • Hormonal roles (e.g. steroids such as estrogen and testosterone) • Insulation (retention of thermal energy) • Protection of internal organs (e.g. triglycerides and waxes) • Structural components (e.g. phospholipids, cholesterol) • Veronica Parsons 2014 Pg 31 Phospholipids • • • • Consists of a phosphate group (hydrophillic) and 2 fatty acid tails (hydrophobic). Within a membrane, the phosphate faces aqueous areas both inside cell (cytosol) and outside cell (extracellular fluid). The fatty acid tails are buried in the middle. The hydrophobic nature of the tails ensure that only lipid soluble (lipophillic, hydrophobic) or non polar substances (eg steroid hormones, alcohol, chloroform etc) can directly diffuse through cell membranes. Veronica Parsons 2015 Role of lipids in the plasma membrane • Lipids move laterally and can change place in the one layer =dynamic nature • Can fuse with vesicles for endocytosis and exocytosis. • Kinks in Fatty Acid tails enhance fluidity • Cholesterol reduces fluidity by reducing phospholipid movement. Veronica Parsons 2015 Pg 35 FAQ’s • Students are expected to understand that polypeptides and proteins are polymers of amino acids, formed through condensation reactions. They are also expected to understand that the primary structure of a polypeptide or protein is the sequence of amino acids that form the polypeptide or protein, and that the way that polypeptides and proteins are folded, coiled or pleated can be described by secondary (within the chain) and tertiary (overall chain shape) structures, and that those proteins made up of two or more polypeptide chains may be described by a quaternary structure. Students are expected to identify α-helices and β-pleated sheets as being the most common secondary structures. They are expected to understand that the shape of a protein determines its properties and that protein denaturation through changes in temperature, changes in pH or reaction with various chemicals may lead to a loss of biological function. Classifications of, and differences between, different types of proteins such as globular and fibrous proteins are not required. Veronica Parsons 2015 Pg 35 Amino Acids An amino acid is a relatively small molecule with characteristic groups of atoms that determine its chemical behaviour. The structural formula of an amino acid is shown at the end of the animation below. The R group is the only part that differs between the 20 amino acids. Phenylalanine Cysteine Alanine Glycine Valine Amino Veronica Parsons 2014 H3H C H N H S H H CH 3 C H H R C C O H H O Acid Pg 38‐40 Levels of Protein Structure • 4 different levels of organization: • Primary Structure: The order of amino acids in the molecule. • Secondary Structure (within the chain)Local 3D folding structure formed by hydrogen bonds. • Tertiary Structure: T(overall chain shape) he total folding of the protein, held together by hydrogen or ionic bonds. • Quaternary Structure: Is a structure consisting of two or more polypeptide chains. Veronica Parsons 2015 Pg 42 Functions of Proteins (HITSME) • • • • • • • • • Proteins are very diverse and serve a number of different roles within the cell, including: Structure: Support for body tissue (e.g. collagen, elastin, keratin) Hormones: Regulation of blood glucose (e.g. insulin, glucagon) Immunity: Bind antigens (e.g. antibodies / immunoglobulins) Transport: Oxygen transport (e.g. haemoglobin, myoglobin) Movement: Muscle contraction (e.g. actin / myosin, troponin / tropomyosin) Enzymes: Speeding up metabolic reactions (e.g. catalase, lipase, pepsin) Amino acids can be joined together in a condensation reaction to form a dipeptide and water This results in the formation of a peptide bond, and for this reason long chains of covalently bonded amino acids are called polypeptides Veronica Parsons 2015 Pg 42How does Structure relates to Protein Function Protein Structure Function Enzymes Specifically shaped active site that is complementary to a specific substrate Catalyse chemical reactions Channel Proteins Specific shape that allows a particular chemical (often hydrophilic) to move through Transport Receptors Initiate signal Specific shape that transduction allows a specific signalling molecule to bind which will lead to a cellular response Antibodies Y shaped molecule with 2 complementary antigen binding Deactivate a pathogen Hormones Veronica Parsons 2015 Specific shape that is complementary to a Initiate cellular response Pg 43 Nucleic Acids(Polynucleotides) There are two kinds of nucleic acid: • deoxyribonucleic acid (DNA) is located in chromosomes in the nucleus of eukaryotic cells and in cytosol of prokaryotic cells. • It it also found in the mitochondria and chloroplasts • ribonucleic acid (RNA) –there are 3 types-ribosomal, messenger and transfer. • Nucleic Acids are mostly information storage molecules. Veronica Parsons 2015 FAQ’s • Students are expected to recognise the monomers of DNA and RNA and identify complementary base pairs. Veronica Parsons 2015 Monomer of a Nucleotide • Nucleotides are the building blocks of DNA &RNA and contain a phosphate component (not phosphorus), a 5carbon sugar component (not sugar) and a nitrogenous base component (not base). Veronica Parsons 2015 DNA Template Strand • The DNA Strand has the sequence 5’ A-G-C-T 3’ What is the complementary mRNA strand Veronica Parsons 2015 Pg 48 DNA vs RNA Summary DNA RNA No. of Nucleotide Strands 2 1 Sugar Deoxyribose Ribose Bases Adenine Cytosine Guanine Thymine Adenine Cytosine Guanin Uracil Functional Location Nucleus (Eukaryotes) Nucleus & Ribosome Cytoplasm (Prokaryotes) (Eukaryote) Cytoplasm & Ribosome (prokaryote) Do task pg 49 +pg 50 Stop Codons: UGA UAA UAG Pg 57 Proteomics • • An emerging branch of biology which revolves around the structure and function of proteins. This involves a thorough study of the proteome ( all proteins expressed within a cell for the duration of the life of the cell) and is very closely related to the study of the genome ( the entire DNA content of the cell). The genome carries genes (sections of DNA) that provide the blueprint for protein synthesis. Certain sections of the DNA are transcribed into RNA and then translated into a protein within the cell so that the specific function of the cell can occur. Veronica Parsons 2015 Why did the phospholipid scream? • …because it saw the cytoskeleton The Cell Theory pg 61 • All living things are composed of cells and/or their products • All cells come from preexisting cells. • The cell is the basic unit of life. Veronica Parsons 2015 Pg 82 STRUCTURE =FUNCTION Veronica Parsons 2015 Cell Ultrastructures‐ Structures Function • • • • • the role played by organelles in the export of proteins Ribosomes- Free (intracellular protein synthesis) Rough endoplasmic reticulum- Transport of extracellular proteins Golgi apparatus –packaging of extracellular proteins into vesicles Mitochondria-ATP for endocytosis, Active transport or exocytosis Absorptive Cell Kidney • Veronica Parsons 2014 Endocrine Pancreatic Cell End of Part 1 Enjoy a 10 minute break! the structure and function of the plasma membrane and the movement of substances across it: – the fluid‐mosaic model of a plasma membrane – the packaging, transport, import and export of biomacromolecules (specifically proteins) – the role played by organelles including ribosomes, endoplasmic reticulum, Golgi apparatus and associated vesicles in the export of proteins • Veronica Parsons 2014 Pg 89 Fluid Mosaic Model of Plasma Membrane Veronica Parsons 2014 VCAA 2006 EXAM VCAA 2012 Veronica Parsons 2013 VCAA 2012 Veronica Parsons 2013 VCAA 2011 (2 Marks) Veronica Parsons 2013 Answer Veronica Parsons 2013 FAQ’s • Diffusion, osmosis, active transport, facilitated diffusion, endocytosis and exocytosis are required in Unit 3. Although simple diffusion, active transport and facilitated diffusion are introduced in Unit 1, they are also relevant in Unit 3, in particular with respect to protein transport, movement of neurotransmitters across a synapse and the movement of other substances important in cellular processes such as photosynthesis and cellular respiration. Exocytosis and endocytosis are also important in both Units 3 and 4 as they are relevant to events including the release of signalling molecules, secretion of antibodies from plasma cells and the phagocyticity of macrophages and neutrophils. Veronica Parsons 2014 Movement Across Plasma Membrane • Diffusion • Osmosis • Facilitated Diffusion • Active Transport • Vesicular Transport Veronica Parsons 2014 Pg 92 Movement Across the Plasma Membrane Osmosis • Osmosis is the passive movement of water molecules from a regions of lower solute concentration to a region of higher solute concentration across a partially permeable membrane until equilibrium is reached. • Passive (does not require energy). Veronica Parsons 2014 Osmosis Pg 94 Osmosis in Animal and Plant Cells Veronica Parsons 2014 Porins Veronica Parsons 2014 Plasma Membrane Movement Across the Plasma Membrane Active Transport • DOES require energy • Movement of substances is AGAINST THE CONCENTRATION GRADIENT: from low high concentration • This type of transport will only occur in the presence of ATP • eg. Na+/K+ Pump Veronica Parsons 2014 Active Transport Movement Across the Plasma Membrane Vesicular Transport • Vesicular transport is transport of substances that requires the use of a vesicle • It requires ENERGY • Vesicles are used to transport substances both within the cell (intracellular) and out of the cell (extracellular) • Possible because: 1) Membrane has some fluidity 2) Small amounts can be added or removed without tearing the membrane (endo‐ & exo‐ cytosis) 3) Membranes of all organisms are the same Veronica Parsons 2014 Vesicular Transport Exam Question • How does a monosaccharide enter an epithelial cell? Acceptable Answers Facilitated Diffusion Active Transport Protein Channels Protein Carrier Molecules Veronica Parsons 2013 • the nature of biochemical processes within cells: – catabolic and anabolic reactions in terms of reactions that release or require energy – the role of enzymes as protein catalysts, their mode of action and the inhibition of the action of enzymes both naturally and by rational drug design – the role of ATP and ADP in energy transformation – requirements for photosynthesis – excluding differences between CAM, C3 and C4 plants – including: the structure and function of the chloroplast; the main inputs and outputs of the light dependent and light independent stages – requirements for aerobic and anaerobic cellular respiration: the location, and main inputs and outputs, of glycolysis; the structure of the mitochondrion and its function in aerobic cellular respiration including main inputs and outputs of the Krebs Cycle and the electron transport chain Veronica Parsons 2014 Book 2 Pg 3 CATS EX SPIRE • Catabolic Processes are Exergonic (breakdown) • Example Cellular Respiration • Hydrolysis reactions are also catabolic. Veronica Parsons 2015 Role of ATP & ADP in Energy Transformations Veronica Parsons 2015 Enzymes • • • • Enzymes are large protein molecules responsible for the thousands of metabolic processes that sustain life. They are highly selective catalysts, greatly accelerating both the rate and specificity of metabolic reactions, from the digestion of food to the synthesis of DNA Like all catalysts, enzymes work by lowering the activation energy for a reaction, thus dramatically increasing the rate of the reaction. As a result, products are formed faster and reactions reach their equilibrium state more rapidly. Enzymes are not consumed by the reactions they catalyze, nor do they alter the equilibrium of these reactions. However, enzymes do differ from most other catalysts in that they are highly specific for their substrates. Veronica Parsons 2015 Pg 5‐ Enzymes Lower Activation Energy Activation Energy Q9 p 16 MOVIE Pg 8 Competitive Inhibition • • • Similar shape to substrate so compete for the active site & prevent the formation of Enzyme-Substrate Complex They fit into the Active Site, but remain unreacted since they have a different structure to the substrate but less substrate molecules can bind to the enzymes so the reaction rate is decreased. Competitive Inhibition is usually temporary, and the Inhibitor eventually leaves the enzyme. Veronica Parsons 2014 Non Competitive Inhibition • Prevent formation of Enzyme-Product Complexes. So they prevent the substrate from reacting to form product. • Usually, Non-competitive Inhibitors bind to a site other than the Active Site, called an Allosteric Site. • Doing so distorts the 3D Tertiary structure of the enzyme, such that it can no longer catalyse a reaction. • Many Non-competitive Inhibitors are Veronica Parsons irreversible and2014 permanent, and denature the Rational Drug Design • A focussed approach using information about structure of a drug receptor or it’s ligand to identify or create candidate drugs. • *Ligand-substances that are able to bind to a biomolecule such as substrates, inhibitors, neurotransmitters Veronica Parsons 2015 Relenza Veronica Parsons 2015 End of Part 2 Enjoy a 20 minute break 2011 Question 2011 Answer The Chloroplast The chloroplast is enclosed by an envelope consisting of two membranes separated by a very narrow intermembrane space. Membranes also divide the interior of the chloroplast Thylakoid membranes into compartments: flattened sacs called thylakoids, which in places are stacked into structures called grana. Grana, are stacks of thylakoid membranes containing chlorophyll Stroma, the liquid interior of the chloroplast Inner membrane the stroma (fluid) outside the thylakoids. They contain DNA and also ribosomes, which are used to synthesize some of the proteins within the chloroplast. Veronica Parsons 2014 Thylakoid sac (disc) Outer membrane Light Dependant Phase • INPUTS: Light, ADP +Pi 12H2O (Water), NADP+, • OUTPUTS: NADPH, 6O2, ATP • Inputs=LAWN • Outputs= NOA • *NADP= nicotinamide adenine dinucleotide phosphate Veronica Parsons 2015 Light Independent Phase • INPUTS: CO2 • ATP • NADPH • OUTPUTS: 6H2O Water • ADP +Pi • NADP+ • Gucose • CAN WANG Veronica Parsons 2015 Biochemical Processes Photosynthesis Stage Light Dependent Site Eukaryote: Grana of Chloroplast Prokaryote: Free Floating Chlorophyll Inputs Light 12 H2O NADP+ ADP + Pi Outputs * 6O2 NADPH ATP Process Light Independent Eukaryote: Stroma of Chloroplast Prokaryote: Cytosol 6CO2 NADPH ATP C6H12O6 6 H2O NADP+ ADP +Pi Veronica Parsons 2015 Light energy absorbed by chlorophyll Water molecules split to form H+ ions + O2 gas O2 gas released via stomata Excited electrons flow through an electron transport chain to provide energy for ATP synthesis Unloaded electron acceptor molecules NADP+ accept H+ ions to form NADPH In the Calvin Cycle, 6CO2 + H+ ions (from NADPH) used to synthesise sugars. This is called carbon fixation. This is catalysed by tshe enzyme RuBisCO Energy provided by the ATP produced in LD reaction. GLYCOLYSIS (NAG NAP) • INPUTS: NAD+ • ADP +Pi • Glucose • OUTPUTS: 2NADH • 2ATP • 2Pyruvate Veronica Parsons 2015 Anaerobic Respiration Veronica Parsons 2015 Anaerobic Respiration Glycolysis Cytosol C6H12O6 2NAD+ 4ADP + Pi 2 Pyruvate 2NADH +H ions 2ATP Anaerobic (Fermentation) (Plants&Yeast) Cytosol Pyruvate is further broken down into ethanol & CO2 Anaerobic (Fermentation) (Animals) Cytosol Pyruvate is further broken down into Lactic acid & Water Veronica Parsons 2015 Glucose molecule is broken down to 2 pyruvate molecules Hydrogen ions are removed from glucose and used to form loaded acceptor molecules NADH. 2 molecules of ATP are also produced Aerobic Respiration Stage Glycolysis Kreb’s Cycle (Citric Acid Cycle) Site Cytosol Eukaryote: Matrix of Mitochondria Prokaryote: Cytosol Inputs Outputs C6H12O6 2NAD+ 4ADP + Pi 2 Pyruvate 2NADH +H ions 2ATP 2 Pyruvate 6NAD+ 2FAD 2ADP + Pi 4CO2 6NADH +H ions 2FADH2 2ATP Process Electron Transport Eukaryote: Cristae of Mitochondria Prokaryote: Cytosol Veronica Parsons 2015 Oxygen NADH +H ions FADH2 32(34) ADP + Pi 6 H2O NAD+ FAD 32(34)ATP Glucose molecule is broken down to 2 pyruvate molecules Hydrogen ions are removed from glucose and used to form loaded acceptor molecules NADH. 2 molecules of ATP are also produced Pyruvate is converted to acetyl CoA and 1 Co2 molecule is released Acetyl CoA enters Krebs Cycle and another 2 Co2 are released for each pyruvate. The hydrogen ions are released from cycle and used to form NADH & FADH2 2 molecules ATP produced. NADH & FADH2 come to cristae to transfer electrons from one cytochrome to another releasing ATP in the process. Oxygen is the final electron acceptor forming water Krebs Cycle • INPUTS: NAD+ • 2 ADP+Pi • Pyruvate • FAD • NAPS are FADS ? • OUTPUTS: 6CO2 • 2ATP • NADH • FADH2 Veronica Parsons 2015 Aerobic Respiration; Electron Transport • INPUTS: O2 • FADH2 • 32-34 ADP+Pi • NADH • OUTPUTS: FAD • 32-34 ATP • Water • NAD Veronica Parsons 2015 2010 Metabolism Answer VCAA 2006 EXAM Summary Experimental Design Year Topic Marks Command Terms 2006 Designer Drugs 3 Design 2007 Enzymes 3 Outline Experiment Explain Results 2008 Disease 5 State hypothesis Outline Experiment Describe Results 2009 Signalling Molecules 4 (Pheromones) Outline Experiment Describe Results 2010 Metabolism (Energy) 3 State hypothesis Outline Experiment Describe Results 2006 Experimental Design • Design an experiment, using mice, to test the effectiveness of the (anti‐ viral) drug you have designed. (3 Marks) Examiner Report‐ Common Errors • Selecting only two mice without referring to repetition of the experiment; • Not mentioning the similarity of the mice and/or environment; • Injecting mice with the virus and then waiting days or weeks before the drug was used; • Administering the drug first and then exposing the mice to the virus days or weeks later; • General statements about comparing the results, without any reference to what result would indicate effectiveness of the drug. • Some Guys Prefer IndiViduals That Really Rock pg 10‐14 Sample‐eg Two large groups of identical members of the sample kept in the same environmental conditions . State a specific number (of reasonable magnitude) in each group, instead of simply describing a ‘large’ group or replication of the experiment. Group_ Divide the sample into two groups of equal size‐One is the experimental Group and One is the Control Group.I • Independent Variable‐One of the groups then needed to receive no further treatment (the control group), the other group (the trial group) receives the drug under investigation • Time after a few days, each of the groups needs to Examined ‐the number of mice that have developed the viral disease in each group counted. • Results‐ If the number of mice in the trial group is significantly less than the number in the control group, the drug has been effective. • G Sample and Allocate to 2 Groups (Experimental group Control Group) Pretest‐ infection of both groups with the virus against which the drug has been designed. • S Repeat‐experiment a number of times Veronica Parsons 2015 P IV T Pretreatment State the Independe4nt Variable Time R Results R Repeat 2007 Experimental Design A student predicted that if a temperature graph was prepared for carrot catalase activity, the optimal temperature would be expected to be much lower than that shown by catalase from humans. WHY???? Describe (or outline) an experiment you would carry out with pieces of carrot to test the accuracy of the prediction. Hydrogen peroxide is available as a 3% in water solution. Explain fully what results would support or negate the student.s prediction. (3 marks) Veronica Parsons 2015 Examiner’s Report • The use of at least two groups of identical pieces of carrot, placed at various temperatures (for example, 16°C and 37°C) in the same concentration of hydrogen peroxide. A specific number of carrot pieces could have been given (for example, 10). Students who mentioned the variable and other factors which were controlled adequately demonstrated their understanding of the experimental design and were awarded the first mark. • For the second mark, students needed to discuss how catalase activity would have been measured. For example, collecting the gas to measure the production of oxygen gas, or observing the bubbles being produced. • The third mark was awarded for a discussion of the expected results and a conclusion based on the student’s prediction. For example, more oxygen gas produced at 16°C compared to 37°C would support the prediction Veronica Parsons 2015 2008 Experimental Design The human hormone vitamin D is found in high levels in some immunological tissues. A scientist predicted that a defi ciency of vitamin D may play a role in the development of rheumatoid arthritis and hence treatment with vitamin D tablets may reduce development of the disease. The scientist decided to test this idea by using a strain of laboratory mice that normally developed rheumatoid arthritis. Design an experiment to test the scientist’s prediction. In your answer you should state the hypothesis that you are testing outline the experimental procedure that you follow describe results that would support your hypothesis. (5 Marks) Veronica Parsons 2015 Examiner’s Report Hypothesis That treatment with Vitamin D reduces the chance of mice developing rheumatoid arthritis Experimental Design Use two large groups (for example, 20) of similar mice which normally develop rheumatoid arthritis. Treat the experimental group with Vitamin D. The other group, the Control group, are given a placebo and do not receive Vitamin D. Keep all other factors constant, such as diet, space, water and temperature. Results For the hypothesis to be supported, fewer mice that are given Vitamin D should develop rheumatoid arthritis than those in the Control group. Veronica Parsons 2015 2009 Experimental Design The beet caterpillar is an insect pest of the tomato plant. When a beet caterpillar starts to eat a tomato plant, the plant responds by producing a chemical known as jasmonic acid. Jasmonic acid and its derivatives have a variety of odours. Some scientists have suggested that these odours attract wasps to the caterpillar‐affected plants. i. Outline an experiment you would carry out to test this hypothesis. ii. Describe the results that would support the hypothesis. (4 marks) Veronica Parsons 2015 Examiner’s Report • Take two groups of tomato plants that are the same age type and state of health. One group is affected with beet caterpillars, the other is unaffected. • Both groups are kept in the same environment (for example, the same temperature and water availability). • Wasps are released and their activity is observed. • Large numbers of plants are used or the experiment is repeated many times. Veronica Parsons 2015 2010 Experimental Design A pet food company has made two different types of food pellets, one hard and the other soft. Each kind of pellet has the same energy content. The company intends to test the pellets on a group of adult mice. You are provided with • many adult mice. Each mouse is genetically identical and of the same weight • two types of pellets, one hard and one soft. Outline an experiment that would allow you to determine if the hardness of the food pellets affects the balance between energy intake and energy expenditure. In your answer you should • state the hypothesis that you are testing • outline the experimental procedure • describe the results that would support or negate your hypothesis. (3 Marks) Veronica Parsons 2015 Examiner’s Report • Hypothesis: That the mice fed hard pellets will weigh more than mice that are fed soft pellets • Experimental procedure: Two groups of mice: one group fed hard pellets and the other soft, and all other variables controlled • Results: Mice fed hard pellets weighed more than mice fed soft pellets • Students did not need to state the features of the mice as these were given in the stem of the question; however, they needed to identify a factor which should have been controlled, for example, water availability. • The results needed to relate directly to the hypothesis. Measuring weight was by far the most feasible method; however, measuring the activity of each group was also considered a suitable measure in this case. Veronica Parsons 2015 Look for Patterns and Make Acronyms • • • • • • • • • • • • • • • STARR (Sample-Treatment-All Factors Same-Results-Repeat) RUDD(Rapid Burial-Undisturbed-Decomposer Free-Downward Pressure) BADFEW(Biochemistry-Anatomy-Distribution-Fossils-Embryology-Witness) IPMAT (Stages of Mitosis) UGA UAA UAG (Stop Codons) COD (Cross with homozygous Recessive-Observe Offspring-Decision) VSSI (Variation-Struggle-Survival of Fittest-Inheritance) VSSI with a B (Barrier) GIFTS (Gene-Insert-From-Transform-Select) Crocs Are Never Fine- (CO2-ATP-NADH-FADH2) SHIP- (Storage-Hormones-Insulation-Protection-Structure) HITSME ( Hormone-Structure-Immunity-Transport-Movement-Enzymes) CATSEXSPIRE (Catabolic-Exergonic=Respiration) PRIMATES COAL (Complement Proteins-Chemotaxis, oponise, Agglutinate, Lysis) Psychic Predictions • Signal Transduction of Lipid Based (Hydrophobic)vs Protein Based (Hydrophillic) • Explain Active Transport • Cell Mediated-T Cellsdraw one • Explain how T Cells protect against pathogens or T cells vaccination • Transcription • Autosomal Dominant Pedigree Veronica Parsons 2015 • Dihybrid test cross linked vs unlinked • Describe PCR • Speciation • GMO Mosquitos • Tassie Devils-Founder Effects • Out of Africa vs Multiregional.