Chapter 10

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Physiological Chemistry

Introduction to Organic Chemistry

Organic Compounds

• Mostly covalent bonding

• Low melting point

• Most water insoluble

• Non-electrolytes

• Reactions usually slow

Carbon

• Forms four covalent bonds since carbon has 4 valence electrons

• Can be:

– Four single bonds

– 1 double bond and two single bonds

– 2 double bonds

– One triple bond and one single bond

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Hydrocarbons

• Contain only carbon and hydrogen atoms

• Derivatives ( Substituted hydrocarbons) are formed by adding other elements (O,

S, N, P, Cl, etc…) or functional groups

– Aliphatic hydrocarbons are non-aromatic hydrocarbons

– Saturated hydrocarbons (known as

“Alkanes”) possess all single bonds between carbons

• Names end in –ane (methane, ethane, propane, butane, pentane, hexane, etc…)

Hydrocarbons

• Unsaturated hydrocarbons possess one or more double (Alkenes) or triple

(Alkynes) bonds between carbon atoms

– Names end in –ene (propene, etc..) or –yne

(butyne, etc…)

• Can be cyclic (rings) or acyclic

– Aromatic hydrocarbons contain benzene rings (6 C ring structure with conjugated double bonds)

• Can be branched ( alkyl groups)

– Branch name ends in –yl (methyl, ethyl, etc…)

Hydrocarbons

• Cycloalkanes

– Saturated hydrocarbons, but the carbon atoms are in a ring structure

– Cyclopropane, Cyclobutane, etc…

• Cycloalkenes

– Unsaturated hydrocarbons, but the carbon atoms are in a ring structure

– Cyclopropene, Cyclobutene, etc…

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Structural Formulas

• Expanded:

– Shows all bonds and atoms

H

H C

H

H

Structural Formulas

• Condensed:

– Partially abbreviated formulas

– CH

3

-CH

3 or CH

3

CH

2

CH

3

• Skeletal :

– Show only C atoms and other atoms except H bonded to C atoms and bonds holding them

(assume everything bonded to carbon atoms are hydrogen atoms)

– C-C-C-C-C or C-C-C-C-C-C

C

Structural Formulas

• Line-Angle:

– All points and ends are carbon atoms unless other atom shown

– Very common

– Fill all available bonds with hydrogen atoms unless another atom is shown

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Line-Angle Formulae

OH

PENTANE

O

DIETHYL ETHER

ISOPROPYL ALCOHOL

Cycloalkanes

Division of the Family of Hydrocarbons

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Benzene

Classification of Carbon Atoms

• Carbons are classified as primary, secondary, tertiary, or quaternary based on the number of carbons bonded to it

– Primary = carbon atom bonded to one other carbon atom

– Secondary = carbon atom bonded to two other carbon atoms

– Tertiary = carbon atom bonded to three other carbon atoms

– Quarternary = carbon atom bonded to four other carbon atoms

Carbon Atoms

How many primary, secondary, tertiary, and quarternary carbons are there? Where?

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Isomers

• Chemicals that have the same molecular formula, but different arrangement of atoms

– Thus they are different substances

• Constitutional/Structural isomers: differ in arrangement of carbon atoms

– Methane, ethane and propane have no isomers

– Butane = C-C-C-C or isobutane C-C-C

C

* both have 4 carbons and 10 hydrogens

Isomers

• Cis-trans stereoisomers only for cyclicalkanes or alkenes (double bonded unsaturated)

– These isomers have the same structural formula, but differ in arrangement of atoms in space due to restricted rotation

• Cis = same substituent on same side

• Trans = same substituent on opposite side

– Stereoisomers are usually very different physiologically and have very different physical properties

Fatty

Acids

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Positional Isomers

• These chemicals have the same carbon structure, but differ in the position of same substituent, alkyl group, or functional group

– 1-Bromopropane, 2-Bromopropane

– 2-Bromopentane, 3-Bromopentane, 1-

Bromopentane

– 1,1-Dibromocyclohexane, 1,2-

Dibromocyclohexane, 1,3-Dibromocyclohexane,

1,4-Dibromocyclohexane

Br

Positional Isomers

Br

Br

Br

Br

Br

Br

Positional Isomers

Br Br Br

Br

Br

Br

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Functional Groups

• These are atoms or groups of atoms added to a hydrocarbon that gives a potential site of reaction for the compound

• The insertion of a functional group also changes the chemical and physical properties of the substance

• Functional groups form the various

Classes of Organic Compounds

Functional Groups

• In chemical reactions, one functional group is usually converted into another

• In organic chemistry, the symbol R is shorthand to designate hydrocarbon

• Thus, R-Cl is a shorthand way to express a halide and R-OH is short for an alcohol

Common Functional Groups

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Main Functional Groups

1.Alkene

2.Halide

3.Alcohol

4.Ether

5.Amine

6.Thiol

7.Disulfide

8.Aldehyde

9. Ketone

10. Carboxylic Acid

11. Ester

12. Amide

Functional Groups

Cl

OH

NH

2

O

SH

S

S

Functional Groups

O

O

H

O

O

OH

O

CH

3

NH

2

O

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