4.1 Week 4 The Nature of Biochemical Processes Area of Study 1 Molecules of life Key knowledge Enzymes and organic catalysts Energy requirements of cells Catabolic and anabolic reactions Key skills Investigate and inquire scientifically Apply biological understandings Communicate biological information and understanding Tasks this week relate to outcome 1. Analyse and evaluate evidence from practical investigation related to biochemical processes Relevant websites – see online biology course environment. Go to the Links section. Glossary terms for Week 4 can be found here: http://quizlet.com/_gtmr 4.2 Introduction Read carefully through this Week’s work before completing the tasks. Check for any practical exercises that may require you to obtain materials and equipment. This is Week 4. You will need to read sections from the text book – Biology VCE Units 3 and 4 by Thomson Nelson. The Objectives By the end of this week you should have completed the SAC (School Assessed Coursework) practical activity. You should be able to: Distinguish between anabolic and catabolic reactions Understand the importance of endergonic and exergonic reactions Define the term catalyst Describe the role of enzymes in a cell Define the term metabolism Understand how enzymes work Give factors that affect enzyme activities Apply you knowledge to new situations Investigate the use of the enzyme renin Complete the following SAC (School Assessed Coursework) practical activity Contact me as soon as possible if you are not able to complete this practical. Please note the following important instructions: Keep your SACs once returned, in case they are requested by VCAA. You should make and keep copies of your SACs when completed (particularly major ones) to protect against loss. Read carefully through the rules of completion on the following page before starting your SAC. 4.3 SAC Rules for Completion Please note the following conditions for the submission of School Assessed Coursework (SACs): SACs must be completed on time as indicated in the course book and SAC material SACs received in time will be graded SACs received after the due date will be assessed for satisfactory achievement of the associated outcome (or part thereof) – they will receive an NA for assessment, as the student has not fulfilled DECV assessment requirements. If an NA has been given the teacher will explain the consequence of the NA. Lost, stolen or damaged SAC work is governed by VCAA policy. If this happens, contact your teacher. A Declaration of Authenticity will be provided with SAC materials or in the course book. You must sign this to verify that the conditions set by the teacher have been followed. If the SAC is completed under supervision, your supervisor must sign the Supervisor’s Certificate, attesting that the work has been done under the correct conditions. SACs will not be assessed until the Declaration of Authenticity and Supervisor’s Declaration (if required) have been received by the DECV. When SACs are returned you must retain them until the results have been finalized. VCAA may request they be submitted for moderation or verification. Only completing SACs (Units 3 and 4) will not allow you to demonstrate achievement of the unit outcomes. This is achieved by satisfactorily submitting all the weekly work as specified in the course-book. If you have enrolled late or have received materials late please contact your teacher to establish a modified timetable. This timetable is to be followed subsequently in regards to SAC submission. A Modified SAC Timetable will then be forwarded to you. It ensures you know the extension arrangements and must abide by them. Once these extension arrangements are established they become your modified timetable. SACs will then be subject to the Rules for Completion based on your modified timetable. Students need to gain extensions prior to the SAC submission date. The SAC timetable and/or conditions may be varied through the processes of Special Provision. These processes are described in the “Student Guide to Distance VCE 2005’. Applications are the responsibility of the student or supervisor to formally apply to Year 12 Student Coordinator. All applications must be accompanied by appropriate and current documentation. Please note: You may not resubmit work for re-grading of a SAC in Units 3 and 4. You are only able to resubmit work in order to demonstrate the achievement of an outcome to receive a satisfactory result for the Unit. 4.4 OUTCOME 1 SAC PRACTICAL ACTIVITY After the theory and practical in week 3, you should be familiar with the properties of differentially (semi or partially) permeable membranes. Experiment 4A - Demonstrating Differential Permeability (dialysis) When making drawings make sure that: the outlines are clear they are fully labelled the scale of your diagrams is recorded. Instructions for completing SAC activities As this is part of your formal assessment it is to be done under supervision (so ensure that your supervisor is available) within 80 – l00 minutes of class time. A standard practical report (see page 0.6 at the start of this book) is to be completed by the next day and posted to the DECV by the date given on page 0.2 unless you do the SAC at the DECV – in which case you will have until the following Friday to post the work. late enrolling students need to contact me (your teacher) to arrange alternative dates extensions are available to students with extenuating circumstances however these can only be granted by me (your DECV teacher) the authentication declaration sheet must be completed and sent in with the completed practical report. Practical activity Do the practical activity on the following pages and write a standard practical report in accordance with the requirements as outlined above and on page 0.6. Practical work It is likely that you will have to find and prepare materials for some practical exercises. If you think you might have problems performing a particular practical exercise, contact your Biology teacher as soon as possible. Before beginning the prac make sure that you have completed the weekly work in Week 3. 4.5 OUTCOME 1 EXERCISE 4A DEMONSTRATING DIFFERENTIAL PERMEABILITY (DIALYSIS) Aim Observe and describe the effects of a differentially permeable membrane on the process of diffusion. Note/ The term ‘differentially permeable’ means semi or partially permeable Background information What is a control? The word ‘control’ is used as a short way of saying the control set up or control group. A control is a standard of comparison for checking inferences drawn from an experiment. The control part is used to verify the experimental part. Many experiments that are made to test an hypothesis involve the use of a control. The control establishes what is ‘normal’ or constant. Keep all things constant except for the factor that you are deliberately changing in the experimental set up – so that your tests are fair. The one factor being changed is called the variable and can be one of any number of things for example temperature, light, presence or absence of a substance etc. A fair scientific experiment is called a controlled experiment. Please note Starch (polysaccharide) is a polymer made up of many glucose (monosaccharide) monomers joined together. This is a clue as to the differences in size of each molecule. To test for starch, add several drops of brown iodine/potassium iodide solution to the test solution. Blue/black colour appears when starch is present. To test for glucose use testape or Clinstix strips Test tape turns green in sugar. Clinstix strip turns light purple / dark purple. – Any of the positive colour blocks indicate presence of glucose. Use the colour guide given below. Dark +++ Dark purple Hypothesis Medium ++ Light + Negative light purple Make an ‘educated guess’ about what outcomes you will expect in this experiment. Read through the practical exercise and the aim carefully to ensure that your hypothesis is relevant. Equipment 1. 2. 3. 4. 5. 6. 20 cm strip of dialysis (cellulose) tubing Test tube (needs to be wide enough to take the dialysis bag) Rubber/elastic band Two petri dishes (or clean saucers if you’re doing it at home) Test-tube rack 10 mL graduated pipette 4.6 7. 8. 9. 10. 11. Dropping pipette (eye dropper) 20 mL(approximately)of mixed glucose and starch solution in a l00mL beaker Iodine/potassium iodide solution in dropping bottle (or you may use Betadine if you are doing it at home. It may be obtained from your local chemist) Testape/ Clinistx Reagent Strips Supply of distilled water in 250 mL beaker. Please note/ the dialysis bag will probably be much larger than shown in the diagram above. Procedure 1. Moisten the piece of dialysis tubing and tie a very tight knot in one end. Open the other end with your fingers so that the end of a pipette can be inserted. 2. Collect approximately 60mL of glucose/starch solution in a 100mL beaker. Using the 10mL pipette, transfer enough of this solution to two-thirds fill the dialysis bag. Take care not to let any solution run down the outside of the bag. 3. Place the bag in the test tube and fasten with a rubber band as shown in the diagram. Rinse the bag thoroughly by carefully filling and emptying the test tube several times with water. Finally, fill the tube with distilled water to within 1 cm of the top and stand it in a rack for at least 20 min. 4. Place two or three drops of the distilled water into each of two clean petri dishes. a. To one petri dish add several drops of iodine/potassium iodide solution. Record your results in the table below. b. Dip one end of the testape into the water in the other petri dish. Record your results. Copy Table 1 below into your notes and record the results of your tests. 5. Rinse the two petri dishes and put them to one side for later use. 6. After leaving the test tube for at least 20 minutes repeat step 4 but use samples of water collected from near the bottom of the test tube around the dialysis bag. Use the dropping pipette to collect the samples. Take care not to break the bag with the tip of the pipette. Table 1 Results of tests. Distilled water Clinistix test Results Interpretation Iodine test (or Betadine) Water in test tube at end of experiment (after 20 minutes) Clinistix Iodine test test (or Betadine) 4.7 7. Clean up all your equipment and put it away. 8. Dispose of any waste material. Discussion a. Of the two substances (starch and glucose) in the solution in the dialysis bag, which was able to pass into the surrounding liquid? By which process did that substance move through the dialysis bag and into the surrounding liquid, osmosis OR diffusion? b. Suggest what differences between the glucose and starch molecules may have enabled this to happen? c. Which step of the procedure represents the control? d. Why is it necessary to test for starch and sugar at the beginning? e. What do the results suggest about the structure of the dialysis tubing? f. Write down a definition of diffusion and osmosis. What are the differences between osmosis and diffusion? Use reference books if necessary. Conclusion Summarise the results of your experiment, relating them to the aim and hypothesis of the experiment along with what you have learned and any errors or improvements you found. Report Write a standard practical report of the above activity. See page 0.6 at the start of this book for guidance. SAC Assessment Criteria Sheet Attach the SAC Assessment Criteria Sheet provided to your standard prac report. Use it as a guide and reference as to what you need to cover in your report. Front Cover & the Authentication Declaration Form Complete the declaration form on the front cover for this week and make sure you attach this to the front of your SAC for this week. 4.8 Name: ……………………………………… Student Id: ………………………. Week 4 SAC Assessment Sheet VCE Biology Assessment Task: Unit 3 Outcome 1 Ex 4A Demonstrating Differential Permeability Outcome Descriptors/Key Knowledge & Skills Very High High Medium Low Very Low Comprehensive Understanding, detailed and accurate Thorough understanding, detailed and accurate Mostly accurate Some relevant discussion, understanding. Some accuracy Some reference, little understanding. Some parts incomplete and inaccurate Understanding of the theory of plasma membranes. Q (a), (b), (e) & (f) Complex understanding Thorough understanding Mostly accurate Some relevant discussion Understanding of aims and method. Hypothesis, Q (c) & (d) & Conclusion Hypothesized relationship between the variables and the predicted results is clear and reasonable based on what has been studied. Procedures are listed in clear steps. Each step is numbered and is a complete sentence. Professional looking and accurate representation of the data in tables and/or graphs. Graphs and tables are labelled and titled. Hypothesized relationship between the variables and the predicted results is reasonable based on general knowledge and observations. Procedures are not listed in a logical order, steps are not numbered and not in complete sentences. Accurate representation of the data in written form, but no graphs or tables are presented. Hypothesized relationship between the variables and the predicted results has been stated, but appears to be based on flawed logic. Procedures are listed but are not in a logical order or are difficult to follow. Collection and presentation of results. Results Some knowledge and understanding of the results. Some accuracy. Results identified but incomplete and inaccurate. Evaluation of procedures and results Conclusion & Q (a), (c), (d) & (e) Application of theory to specified conditions Conclusion & Q (b) & (f) Comprehensive interpretation and evaluation. Hypothesized relationship between the variables and the predicted results is reasonable based on general knowledge and observations. Procedures are listed in a logical order, steps are numbered but not in complete sentences. Accurate representation of the data in tables and/or graphs. Graphs and tables are labelled and titled. Well developed evaluation and interpretation. Relevant evaluation and interpretation. Some evaluation and interpretation. Poor evaluation and interpretation. Very detailed and relevant Mostly detailed and related indirectly. Some knowledge of terms, concepts and relationships Knowledge unclear and irrelevant Very High High Medium Low Very Low Not shown 21-25 16-20 11-15 6-10 1-5 0 Comprehensive, detailed and directly relevant Overall SAC Grade: Some reference to but little or no discussion Hypothesis has been stated but not relevant. Procedures do not accurately list the steps of the experiment. Not Shown 4.9 Authentication Declaration for Outcome 1 This document must be posted or, if being sent by E-mail, scanned with your actual signature on it. Student Declaration of Authentication of Coursework Name of student:----------------------------------------DECV Student No.------------Return the signed Declaration to: Name of Teacher: ---------------------------------------- AUTHENTICATION OF SCHOOL ASSESSED COURSE WORK The VCAA requires that the student sign a declaration at the time of submitting the completed common assessment task stating that all unacknowledged work is the student's own. The student must acknowledge all resources used. This will include text and source material used and the name(s) and status of the person(s) who provided assistance, and the type of assistance received. Accordingly, students must sign and return the declaration below when they submit the common assessment task to their teacher at the Distance Education Centre, Victoria. Without this completed declaration their work cannot be assessed. STUDENT DECLARATION OF AUTHENTICITY NAME OF STUDY:------------------------------------------------NAME OF STUDENT: --------------------------------------------- OUTCOME ONE EXERCISE 4A Demonstrating Differential Permeability. I declare that all unacknowledged work on Outcome 1 above is my own and that I have completed this Outcome 1 practical in a period of not more than 100 minutes for the practical activity itself. The formal write up of the practical was completed by the next day. Student's signature --------------------------------------- Date:----------- TEACHER/PARENT DECLARATION OF AUTHENTICITY I declare to the best of my knowledge the unacknowledged work signed for above is the work of the student identified. OR I cannot attest to the authenticity of the student’s work. *Teacher's/Parent’s signature: -----------------------------------------------(* delete as appropriate) Date ------- 4.10 1. Read through pages 70 to 81 of your text book and complete the tasks for week 4 online at http://www.decvonline.vic.edu.au. You will find a button in the course saying Online Tasks, click on this and answer the questions for week 4. Use your DECV number as the username and your date of birth in reverse order as your password (YYYYMMDD). 2. Take a screen shot or print your results and send them in 3. View the Enzymes interactive found under the Animations button. Key Summary Points Metabolism is the overall chemical activity of cells, including synthesis of organic molecules, energy transforming and recycling processes, and breakdown of unwanted substances. These reactions involve hundreds of enzymes working in ‘chains’. Enzymes are proteins that act as biological catalysts to control the metabolism of the cell. Catalysts make a reaction take place more easily. They do not change the direction of a reaction, are needed in small amounts and remain unchanged at the end of the reaction. Each enzyme usually catalyses only one type of reaction. This specificity is related to the three-dimensional structure of the molecules. Activation energy is the energy required to get a reaction started, even if the reaction eventually releases energy. Enzymes act by reducing the amount of activation energy required for a reaction to occur. The affinity of an enzyme for a substrate can be regulated to alter the rate of a reaction. Factors affecting enzyme action include temperature, pH, other chemicals, amount of reactants and products, and the presence of coenzymes and cofactors. Enzymes are important in both traditional modern medicine. Enzymes play critical roles in metabolic pathways in living organisms. Lack of a particular enzyme can result in disease. Anabolism is the building of larger molecules from smaller molecules. It requires energy to construct the new bonds and often involves dehydration. Catabolism is the breakdown of macromolecules into smaller molecules. The breaking of bonds releases energy and often involves hydrolysis. 4.11 Challenging Activity: Mnemonic Activity Choose one or more terms from the list given on page 96 of your textbook and create a memory aid to help you remember the definition of that term. You may use drawings, poetry, song, sound, whatever works for you! For an example see the Enzymes animation found under the Animations button in the DECV online Biology course environment. Log on to the www.decvonline.vic.edu.au check out the back of your DECV book for your login details if you have forgotten. Click on the link to the Unit 3 Biology course. Click on the button “Discussion Room” Place your Mnemonic as a comment to the Discussion post titled Mnemonics Week 4. Make sure you check out the other Mnemonics left by your classmates and leave them a comment. Challenging Activity: Personal Reflection Log on to the VCE Biology Course. Place your Personal Reflection in the Biology Blog as outlined on 0.7 in the introduction of this book. Checklist This week you should have submitted the following work to me. Please tick the items you have sent, and keep this as your record. Responses to Questions 1-18 online / screen shot or printed SAC Practical activity 4A Demonstrating differential permeability At least one mnemonic of a biological term online Your online Personal Reflection for week 4 The front cover for this week signed by your supervisor Exam Practice Exercise Past Exam Questions 4.12 Each week you will get a least one question that relates to the weeks work, that comes from a past VCE exam paper. The purpose of this task is to familiarize yourself with the type of questions you will encounter during the exam and the timing you should devote to each. Timing You should allow 1 minute and ten seconds per mark assigned to the question. Each of the following multiple choice questions is worth one mark. Question 3 (2000 Exam paper – 1 mark) Enzymes are: A. carbohydrates that have the ability to catalyse reactions. B. proteins that speed up chemical reactions. C. carbohydrates that are denatured at very high temperatures. D. proteins that are used up in chemical reactions. Question 25 (2002 Exam paper– 1 mark) The rate of reaction of a typical human enzyme was compared with the rate of reaction of a typical enzyme taken from bacteria that live in hot springs. The rates of reaction were measured over the same range of temperatures. The data obtained is shown in the following figure. It is reasonable to conclude that A. typical human enzymes fail to act at temperatures above 50ºC. B. the optimal temperature for enzymes for both organisms is about 37ºC. C. a denatured bacterial enzyme would resume activity if reincubated at 40ºC. D. enzymes from bacteria that live in hot springs withstand temperatures up to 100ºC. Question 17 (2003 Exam paper– 1 mark) The following graph illustrates the effect of different concentrations of a substrate on the rate of a cellular reaction. 4.13 In this series of experiments, the amount of enzyme, the pH and the temperature remain constant. The limiting factor at point X is the A. pH. B. temperature. C. amount of enzyme. D. substrate concentration. Don’t forget to drink plenty of water! ONLINE DISCUSIIONS Get to know your fellow students! Go to our Ning at http://vcebiology.ning.com/ to access our online community. Start a Forum post of your own or add to one that is already there called Introductions. Feedback What, if anything needs to be improved, corrected, cleared up or presented better from the materials presented in this week? Your honesty is appreciated. Write your comments on the back of the cover sheet. END OF WEEK 4 Answers to Past Exam Questions Question 3 B is the correct answer. Question 25 A is the correct answer. Question 17 C is the correct answer. Point X on the graph shows that as the substrate concentration increases the rate of the reaction remains constant. A limiting factor is one that prevents the rate of reaction from increasing. The substrate concentration is increasing and the amount of enzyme is constant so the limiting factor is the amount of enzyme. 4.14 315 Clarendon Street, Thornbury 3071 Telephone (03) 8480 0000 FAX (03) 9416 8371 (Despatch) Toll free (1800) 133 511 Fix your student barcode label over this space. SCHOOL NO. 64804 [64804] STUDENT NUMBER ___________________ SCHOOL NAME _______________________ STUDENT NAME ______________________ SUBJECT Biology Unit 3 YEAR/LEVEL TEACHER 12 WEEK 4 ________________________ [ZX] PLEASE ATTACH WORK TO BE SENT. NOTE: Please write your number on each page of your work which is attached to this page. SEND Please check that you have attached: SAC Practical activity 4A Demonstrating Differential Permeability This Coversheet and the declaration and authentication I declare that, except where indicated, the attached SAC is solely the work of the student has been completed according to the following requirements: named above, and Within 80 – l00 minutes of class time It was completed under the supervision of the Supervisor named below. Student's signature: ___________________________________ Date: ______________ Supervisor's signature: ________________________________ Date: ______________ Name of Supervisor: _______________________________________ Relationship to Student: ____________________________________ (Teacher, Employer, Parent, etc.) 4.15 YOUR QUESTIONS AND COMMENTS Please provide the following information: Were you able to complete the tasks in the time frame allocated? ____________________ Roughly how long did it take for you to complete this week of work? _____________ Use this space for any queries or comments you have, (or maybe errors you’ve found). DISTANCE EDUCATION CENTRE TEACHER’S COMMENTS DISTANCE EDUCATION CENTRE TEACHER