Tom Pickett Ian Hazlewood Amy Yu Biology Honour Specialist Unit Plan Assignment (Part B): (EAQ2020-Y-Y-60) Biology, Grade 12 (University Preparation) SBI4U: Molecular Genetics Unit Prerequisite Knowledge and Skills (before starting unit): The following are samples of specific expectations from Ontario’s Grades 9 to 11 curriculum that relate to Unit 2. (See the Ontario Guidelines for full details.) Understanding Basic Concepts Identify and describe the structure and function of important biochemical compounds, including carbohydrates, proteins, lipids, and nucleic acids. Demonstrate an understanding of the process and importance of mitosis. Explain how the concepts of DNA, genes, chromosomes, and meiosis account for the transmission of hereditary characteristics from generation to generation. Describe and explain the process of discovery that led Mendel to formulate his laws of heredity. Explain the process of meiosis in terms of replication and movement of chromosomes. Describe genetic disorders in terms of the chromosomes affected, physical effects, and treatment. Compare and contrast the structure and function of different types of prokaryotic and eukaryotic cells. Compare the structure and properties of the genetic material of viruses and bacteria with those of eukaryotic cells. Describe the role of viruses and bacteria in genetic manipulation, using their knowledge of DNA. Describe cell division, including mitosis, as part of the cell cycle, including the roles of the nucleus, cell membrane, and organelles. Explain how the cell nucleus determines cellular processes and contains genetic material, and why DNA replication is important to organism survival. Key Inquiry and Communication Skills As students begin this unit, they should formulate scientific questions; communicate the procedures and results of investigations and research for specific purposes using data tables and laboratory reports; state scientific questions in a testable form, identifying the relationships among the variables; select and integrate information from various sources, including electronic and print resources, and personally collected data, to answer the questions chosen; gather, organize, and record qualitative and quantitative date using an appropriate format; analyze qualitative and quantitative data and explain how the evidence gathered supports or refutes an initial hypothesis; communicate scientific ideas, procedures, results, and conclusions using appropriate SI units, language and formats, and evaluate the processes used in planning, problem solving, decision making, and completing the task; defend orally a given position on an issue or problem based on their findings; plan ways to model and/or simulate an answer to the questions chosen; demonstrate the skills required to plan and conduct an inquiry; analyze data and information and evaluate evidence and sources of information, identifying flaws such as errors and bias; select and use appropriate vocabulary and numeric, symbolic, graphic, and linguistic modes of representation to communicate scientific ideas, plans, results, and conclusions; work independently or as part of a team. Key Technical and Safety Skills As students begin this unit, they should select appropriate instruments and use them effectively and accurately in collecting observations and data; demonstrate an understanding of safety practices consistent with Workplace Hazardous Materials Information System (WHMIS) legislation by selecting and applying appropriate techniques for handling, storing, and disposing of laboratory materials. Making Connections As students progress through this unit, they should explain the roles of evidence and theories in the development of scientific knowledge about genetics; describe, and explain the implications of, the principal elements of Canadian regulations on biotechnological products; identify, investigate, and describe science- and technology-based careers that require an understanding of molecular genetics; describe some of the theoretical issues surrounding scientific research into genetic continuity; describe the general impact and philosophical implications of the knowledge gained through molecular genetic research on society; provide and describe examples of industrial, medical, and agricultural applications of recombinant DNA technology in society and their impact. BACKGROUND INFORMATION Students should be familiar with the concepts presented in this section. As early as Grade 8, students have covered cell structure, with a possible review conducted in Grade 9. In addition, cell structure and function is revisited in detail during the Grade 11 Biology course. In Grade 9 Science and Grade 11 Biology, students have covered the topics of meiosis and mitosis extensively. The concept of deoxyribonucleic acid has also been introduced in both of these grades to various extents. Grade 11 Chemistry addresses the concept of covalent bonding. Finally some of the societal issues with respect to molecular genetics have been discussed in previous grades. The “Are You Ready” section provides an opportunity for the teacher to diagnose the level of students’ knowledge and understanding of concepts introduced in lower grades that relate to the molecular genetics unit. Teachers need to assess students’ knowledge and understanding and if necessary provide review material for students who require it. Finally, the last question of the section illustrates to the student the widespread societal impact of molecular genetics and its application. ( Nelson Biology 12 Teacher Resource Manual, 2005, pgs. 151-152) The Ontario Curriculum, Grades 11 and 12, Science (2008): Big Ideas: D. Molecular Genetics DNA contains all the genetic information for any living organism. Proteins control a wide variety of cellular processes. Genetic research and biotechnology have social, legal, and ethical implications. (The Ontario Curriculum, Grade 11 and 12 Science, 2008, p.74). OVERALL EXPECTATIONS: by the end of this course, students will: D1. analyse some of the social, ethical, and legal issues associated with genetic research and biotechnology; D2. investigate, through laboratory activities, the structures of cell components and their roles in processes that occur within the cell; D3. demonstrate an understanding of concepts of related to molecular genetics, and how genetic modification is applied in industry and agriculture. (The Ontario Curriculum, Grade 11 and 12 Science, 2008, p.82). Planning notes: Using the Nelson Grade 12 Biology textbook. Using the Nelson Grade 12 Biology Teachers Resource Manual. Each period is 75 minutes. Unit will take approximately 22 classes (approx. 4 weeks). Formulative assessments: on-line self quizzes from Nelson available for students to do at home after reading each chapter. Instructional videos available for download from subscription sites: www.discoveryeducation or www.360learning. Prep of labs before unit begins is strongly recommended. Book computer lab time for implementation of Gizmos, research time for poster, STSE assignment, and biotech presentations. DI strategies: visual: videos available on www.discoveryeducation.com or www.360learning.com. Gizmo computer simulations: www.explorelearning.com SMART board Presentations. visual models: large plastic DNA molecule, board magnetic DNA demonstration kit. Use Bloom's Taxonomy for planning lessons. Plan field trips or have guest speakers. Encourage webbing, brainstorming, and concept mapping. Promote peer mentorship and peer marking. variety of ways for evaluation: poster presentations, portfolios, puzzles (source: http://www.ualberta.ca/~jpdasddc/incl/difinst.htm) Accommodations for Special Needs Students: Instructional Accommodations: buddy/peer tutoring note-taking assistance duplicated notes assistive technology graphic organizers time-management aids extra time for assignments extra time for processing computer options repetition/review materials Environmental Accommodations: alternate work space strategic seating proximity to instructor study carrel Assessment Accommodations: extended time limits extended time for processing reduction in the number of tasks used to assess a concept or skill (source: http://www.edu.gov.on.ca/eng/general/elemsec/speced/iep/iep.html) Enriched Learning Suggestions: have them mentor students. have them research different genetic diseases (esp. rare ones). assign them projects conducive to their talents according to Multiple Intelligences (Gardner Theory). utilize The Enrichment Triad (Renzulli, 1977): General exploratory activities, Group training activities, and Individual or small-group investigations (source: Special Education in Ontario Schools (6ed.) (2008) pgs. 133-139) UNIT#2: Molecular Genetics: Planning Pathway TOPICS PERIOD LEARNING GOALS Chapter 4: DNA: Molecular Basis of Life (Chapter 4 Opener) 1 -understand advancements in DNA technology last 150 years; Human Genome Project DNA: The Hereditary Material (4.1) 2 Lab: Isolation and Quantification of DNA (Investigation 4.1.1) 3 -identify experiments by early researchers to determine structure and function of DNA -to be able to isolate and quantify extracted DNA DNA Structure (4.2) 4 - figure out chemical composition of DNA EXPECTATION CODES TEACHING/ LEARNING STRATEGIES -have students answer "reflect on your learning questions in groups on chart paper. -answer questions together via class discussion. -ask students to explain the possible consequences of genetic engineering. -implement Try This Activity-The Size of the Genome. -content lends itself to a jigsaw activity. ASSESSMENTS & EVALUATIONS -Exit cards are an excellent formative method at the end of each lecture --STSE assignment =summative --Scientist Poster (summative) D 3.7 A 2.2 A 1.3 -this lab allows students to understand the historical significance of DNA research. -use transparencies to allow students to understand 5' to 3' notion. -have students make paper models of DNA. -use plastic DNA model to explain -lab=summative assessment D 2.3 A 1.2 A 1.4 A 1.11 D 2.1 -homework questions. -on line quizzes. -diagnostic black board questions. D 3.7 A 2.1 A 2.2 -understand step-by-step semi conservative replication DNA concepts. -review the significance of hydrogen bonding. -stress importance of proof reading DNA DNA Replication and Repair (4.3) 5 Chapter 4 Quiz 6 Chapter 5 Opener 7 -deciphering of DNA; introduction to biotechnology One Gene-One Polypeptide Hypothesis; Protein synthesis: An Overview (5.1) (5.2) 8 -understand one gene-one polypeptide hypothesis Transcription (5.3) 9 -state the central dogma of molecular genetics; be able to identify different types of RNA Translation (5.4) 10 -able to state the step-bystep process of translation; understand HIV as a reverse transcriptase virus Control Mechanisms: Lab Exercise: Synthesis of Insulin: A Simulation of Protein Synthesis (5.5) 11 -explain gene regulation via operons in prokaryotes Lab: Protein Synthesis an Inactivation of Antibiotic Mutations (5.6) (Investigation 5.4.1) 12 -understand the types and causes of genetic mutations -have students review concepts of mutations and that not all mutations are bad. Key Differences Between Prokaryotes and Eukaryotes: Gene Organization and Chromosome Structure; 13 -determine the differences between prokaryotes and eukaryotes with respect to protein synthesis and gene regulation -have students brainstorm difference/similarities between prokaryotes and eukaryotes. -answer Reflect on you Learning in groups again with chart paper. -use internet to show animations and research on micro array technology. -review enzymes. -use transparencies to show Beadle and Tatum's experiment. -have students work in pairs to decode DNA into proteins. -use videos to review concepts. -process of transcription is very abstract use text art image bank from CDROM. -show video animations to outline this process. -have students work in groups to produce charts summarizing the events of translation from DNA. -have students brainstorm ideas they have about genetic diseases. -use internet to outline various genetic diseases. D 3.1 -quiz=summative assessment -homework questions. -on line quizzes. -diagnostic black board questions. D 3.5 -homework questions. -on line quizzes. -diagnostic black board questions. D 3.3 -Genetic code Gizmo=formative assessment -Cell Component Gizmo D 3.2 -4 Corners Activity=formative assessment transcription/transla tion activity=formative D 3.2 -lab=summative assessment D 3.3 A 1.7 A 1.8 -Mutation Worksheet =summative -lab=summative assessment -homework questions. -on line quizzes. -diagnostic black board questions. D. 3.4 A 1.8 A.10 D 3.3 Chapter 5 Review (5.7) (5.8) -have students look up DNA sequences for genes and SINEs, LINEs in the Human Genome. -to illustrate the prevalence scan newspapers/magazines for articles to discuss with students. -if time permitting, use videos illustrating biotechnology. -concepts used are complex, use lots of visuals, and videos to demonstrate them. Chapter 5 Quiz Chapter 6 Opener 14 -understand the application of molecular genetics in biotechnology Biological Tools and Techniques (6.1) 15 -explain commonly used tools and techniques in molecular genetics Lab: Restriction Enzyme Digest of Bacteriophage DNA: Planned Maps (Investigation 6.1.1.) 16 -give demonstration of how to properly use electrophoresis. Lab: Restriction Enzyme Digest of Bacteriophage DNA; Genetic Engineering (6.2) (Investigation 6.1.1.) Culminating Task 17 -understand how bacteriophage lamba DNA is digested by restriction endonucleases and fragments separated using gel electrophoresis -state the significance of genetic engineering and discuss techniques used in the production of HGH -field trip Advanced Molecular Biological Techniques (6.3) (6.4) 19 Chapter 6 Review 20 -understand DNA extraction, electrophoresis, and DNA fingerprinting -discuss the PCR, RFLPs, and DNA sequencing -explain current applications of biotechnology in the fields of medicine, agriculture, and forensics -review all concepts taught in Chapter 6 to be included in Unit Test Unit 2 Review 21 Unit Test 22 18 -review all concepts taught in Unit 2 -review exons/introns. -if time permits, allow students to research HGH on the internet. -illustrate concepts in biotechnology using animations. -have students engage in an ethical debate surrounding biotechnology. -quiz=summative assessment D 3.6 -homework questions. -on line quizzes. -diagnostic black board questions. -lab=summative assessment D 3.6 D 2.4 A 1.1 A 1.12 A 1.13 -homework questions. -on line quizzes. -diagnostic black board questions. -summative assessment D 1.2 -formative assessment=biotech nology presentations D 3.5 -homework questions. -on line quizzes. -diagnostic black board questions. -homework questions. -on line quizzes. -diagnostic black board questions. -summative assessment D 2.4 SBI 4U Course Evaluation Plan 30% Final Evaluations Task Final Written Exam Lab Based Performance Task Achievement Chart Focus Weighting K/U, T/I, C, A T/I, C 20% 10% 70% course Work Unit : Molecular Genetics Summative Assessments: Unit Test Culminating Task* STSE Case Study DNA Labs* Quizzes Mutation Worksheet Scientist Poster Formative Assessments Genetic Code Gizmo* Cell Components Gizmo 4 Corners Activity* Transcription/Translation Activity Exit Cards Home work questions Online Nelson Quizzes Diagnostic Review Questions on board before class for students to answer Biotech Presentations* 13% of the entire course Weighting in Achievement Chart Focus Category? K/U, T/I, C 23% (3% of total) K/U, T/I, C, A 23% (3% of total) C, A 15% (2% of total) T/I, C 15% (2% of total) K/U, C 8% (1% of total) K/U, T/I, C, A 8% (1% of total) K/U, C, A 8% (1% of total) Achievement Chart Focus K/U, T/I, A K/U, T/I, A K/U, C, A K/U, C K/U K/U, C K/U – Knowledge and Understanding; T/I – Thinking and Investigation; C – Communication; A Application *opportunities to monitor learning skills Appendix table of contents summative assignments: I. Unit Test II. Culminating Task III. STSE Case Study IV. DNA Labs – Taken from Nelson 12 V. Quizzes VI. Mutation Worksheet VII. Scientists Poster formative assessments: VIII. Genetic Code Gizmo IX. Cell Components Gizmo X. 4 Corners Activity XI. Transcription/Translation Activity XII. Exit Cards XIII. Biotech Presentations I. Unit Test II. Culminating Task III. STSE Case Study IV. DNA Labs – Taken from Nelson 12 V. Quizzes VI. Mutation Worksheet K ____ I _____ C _____ A _____ Name: ________________________ Date: _______________________ SBI4U – Molecular Genetics Unit Mutations Worksheet Part A Transcribe and translate the following DNA sequence into the appropriate Protein chain. GCCTTACCCTTCTGTAGGGCGAAATCTCCAAACCCGTACTAGGC Part B For each of the following sequences, highlight the section of the DNA sequence that has been mutated. Name the group of mutations to which this type of mutation belongs. Transcribe and translate each DNA sequence to identify the resultant effect on the protein produced. GCCTTACCCTTCTATGGGGCGAAATCTCCAAACCCGTACTAGGC GCCTTACCCTTCTATGGGGCGAAATTCCAAACCCGTACTAGGC VII. Scientists Poster K _____ C _____ A ______ Name: _________________________ Date: _______________________ SBI4U – Molecular Genetics Unit Scientists Poster Students will choose a scientist or pair of scientists from the list below. Students will research the scientist(s) of their choice and create a poster outlining reasons as to why their scientist(s) is important to the study of genetics. The poster should include: A picture of the scientist(s) the scientist’s contribution to molecular genetics attempts to sell their scientist(s) as the most important (as though making the scientist(s) case in front of a panel selecting Nobel prize winners) Frederick Griffith Erwin Chargaff Reiji Okazaki Marshall Nirenberg & J.H. Matthaei Oswald T. Avery Francis Crick & James Watson George Beadle & Edward Tatum Fredieric Sanger VIII. Genetic Code Gizmo DNA replication – explorelearning.com IX. Cell Components Gizmo RNA and Protein Synthesis – explorelearning.com Alfred Hershey & Martha Chase Matthew Meselson & Franklin Stahl Howard Temin & David Baltimore X. 4 Corners Activity (Assuming a class of 30) Divide the class into 5 groups of six. There needs to be at least 6 members in each group. (It is possible to have fewer groups with larger numbers of students) Similar to a four corners activity, set up 6 (or more) stations around the room at which one (1) member from each group will go to. Each station will look at a specific enzyme involved in DNA replication (teacher created short document) and: determine its role in replication when it acts in replication (what enzyme acts before it, after it) After 5 – 10 minutes have the original groups reform. Students will now piece together a stepwise action to figure out how a strand of DNA is replicated, taking turns explaining to the rest of their group what their enzyme does and how it affects DNA. Teacher walks around the classroom observing groups and asking leading questions to help groups through the process. It’s also a good opportunity to observe learning skills in the classroom. Helicase Exonuclease RNA primase DNA ligase DNA Polymerase Nucleases DNA Polymerase Okazaki fragments XI. Transcription/Translation Activity Divide class in half. One half of the class will be the Transcribers. They will be responsible for summarizing the process of Transcription. They take a section of DNA and transcribe that section into a piece of tRNA. Each student will transcribe their own section of DNA, which upon completion of their section, they will pass to a partner on the translation side of the classroom. The Translators will take the section of tRNA from one of the transcribers and translate XII. Exit Cards After any lecture type lesson (or other lessons) have students answer single question exit cards to allow for a formative assessment of what they have gained XIII. Biotech Presentations Students will be given a list of Biotech topics that they will choose from in partners. The goal of the project is for the students to present their researched technological invention to the class, making sure to include where and when it was first used and what its function is.