Bio100’15, Medina Chapter 3 The Molecules of Life Objectives: I will be able to: 1. Explain the significance of the carbon element in carbon-based life forms. 2. Sketch the carbon skeleton of a compound as a chain of single bonds, double bonds, and in ring formation. 3. Make a table to compare and contrast the monomers, functions, main components, & examples of the 4 molecules of life. 4. Compare and contrast the origin, function & shape of 4 complex carbohydrates: starch, glycogen, collagen, and chitin. 5. Make simple sketches of the 4 different lipids: fats, sterols, phospholipids, & waxes. 6. Sketch and label a DNA nucleotide. CONTENT I. Organic Compounds: carbon-based molecules A. Carbon Chemistry Hydrocarbons: simplest organic compounds Sketch examples of single carbon-carbon bond chemical structures (Methane, Ethane, & Propane) Sketch 2 examples of carbon-carbon double bonding: Sketch the chemical structure of a ring structure with and without double bonding; Functional groups are groups of atoms directly involved in chemical reactions. Examples of functional groups: hydroxyl –OH, carboxyl –COOH, methyl -CH3 Sketch methanol (methyl alcohol, simplest alcohol) B. Monomers form Polymers Draw a collar made out of beads. Label the Polymer and its Monomers Polymerization through dehydration (removal of water molecule) Break down of polymers by hydrolysis (adding water) II. Large Biological Molecules A. Carbohydrates: energy source; composition: C = H2O; water soluble; types: Sketch a glucose molecule: Monosaccharides (monomer)= simple sugars, ring shaped Quick-but-brief; Examples: Glucose, fructose, galactose, ribose, deoxyribose Disaccharides (monomer)= 2 simple sugars Examples: Maltose, lactose, sucrose Polysaccharides (polymer): many monomers, complex sugars, chains of glucose (i.e. 10,000 glucose units in cellulose), slow-but-persistent 1. Starch: main Energy storage in plants 2. Glycogen: primary short-term E storage in animals, released as glucose 3. Cellulose: structure to plants, major source of insoluble fiber for humans (whole grains & fresh fruit). Most abundant on Earth, 4. Chitin: shape & strength in external skeleton of arthropods, B. Lipids: composition: C, O, H, water insoluble? ____ Page 1 of 3 Bio100’15, Medina More Hydrogen, in relation to O, than in carbohydrates Major function: Energy storage, insulation, & hormone production. Fats (most common): Glycerol + fatty acids. 1. Mono, Di, or Triglycerides (90% lipid weight in food) 2. Head: glycerol (alcohol functional group) 3. Tail: Fatty acid chains of C (4-22) and H atoms with carboxyl functional group. Usually different fatty acids bind to the 3 “slots” or “docking” points in glycerol head. a. Types of fatty acids: Sketch a trans and cis fat configurations: Saturated: only single bonds (straight chain), tightly packed, solid at room temperature, ex:__________ Unsaturated (Mono/Poly): >1 double bond, disorderly packed, liquid at room temp., ex:______ Cis or Trans configuration, • Trans fats (created by hydrogenation of unsaturated fats): vegetable oils made industrially by partial hydrogenation for softness in baked goods & to extend shelf-life; natural source: vaccenic acid (meat and dairy prod.) Sketch a triglyceride Sketch a Saturated triglyceride fat Sketch an Unsaturated triglyceride fat Types of Fats and their effects: Saturated C-C Cis fats Unsaturated C=C Trans fats Plant oils Omega-3, Omega-6 Unhealthy, animal fat, full-fat dairies Hydrogenated processed Unhydrogenated, Healthy, some fish foods, solid at room usually liquid at room and plant oils, temperature temperature liquid at room temperature Lower HDL Lower HDL, increase Slightly lower HDL, no Increase HDL LDL change in LDL HDL (high-density lipoprotein) carries cholesterol from body liver, a lot is GOOD LDL (low-density lipoprotein) cholesterol from liver body (i.e. heart), a lot is BAD Homework: From your pantry or refrigerator, make a list of the good unsaturated fat foods that you can identify versus a list of bad saturated/trans fat foods. Look at the labels and write down the amount of saturated, unsaturated and trans fats. Sterols: cholesterol & steroid hormones, Sketch each lipid: o Composition: 4 interlocking rings, differ by type of side chains o Function: Reproduction and growth (estrogen and testosterone), fat break down (cholesterol), precursor of male and female hormones. Phospholipids: major component of the cell membrane, o Composition: Hydrophilic Head: glycerol attached to a phosphate (PO4-) group Hydrophobic Tail: Chains of 2 fatty acids o Function: protects, contains, controls flow of chemicals Wax: single fatty acid linked to a glycerol head, nonpolar; water impermeable C. Proteins (polymers): large folded chain of amino acids (monomers) Page 2 of 3 Bio100’15, Medina AKA polypeptides contain amino (-NH2) and carboxyl (-COOH) groups Composition: C, O, H , N, plus one of 20 different R groups Function: structure, protection, regulation, contraction, transport. Shape: twists, turns, and folds unique 3-D shape determines ________. Four levels of protein structure due to electrochemical bonding and repulsion forces. DEMO: use tube cleaners and beads to make: a. Primary structure: straight chain of amino acids b. Secondary structure: first fold c. Tertiary structure: second fold d. Quaternary structure: 2 tertiary structures joined together Denaturing proteins: unfolding structures by heat, pH, mechanical stress Examples: enzymes: initiate and speed up chemical reactions, highly specific, bind to a substrate to produce a product; lipoproteins (protein + lipid): HDL (lipid<protein), LDL (lipid>protein); glycoproteins (protein + carbohydrate chains) act as fingerprints to identify the type of cell. D. Nucleic Acids (polymers): C, O, H, N Function: store information Types: DNA (deoxyribonucleic acid) holds genetic information; RNA (ribonucleic acid) involved in protein synthesis, & ATP (adenosine triphosphate) cell’s usable form of energy. Composition: Sketch a DNA nucleotide (monomer) with its 3 basic components: a. Nitrogen-containing base (Adenine-Thymine, Guanine-Cytosine) b. deoxyribose sugar ring c. phosphate group Checking: Name the 4 molecules of life and provide their main function: ________________________, function:____________________ ________________________, 3 functions: ____________________, __________________& _________________ ________________________, 3 functions: _______________, __________________ & ______________________. ________________________ function: ______________________________ Answer Questions 1-10, and either 15 or 16 on page 53 of your textbook. Fill in the missing information: Biological Molecules Carbohydrates C, H2O Lipids C, O, H Proteins C, O, H, N, R-grp Nucleic acids C, O, H, N, sugar, phosphate Types 1. Simple sugars 2. Complex sugars 1. Fats: glycerol+1-3 fatty acid chains 2. Sterols: 4 joined rings 3. Phospholipids: Phosphate head + 2 chains 4. Waxes: glycerol+one chain 1. Enzymes 2. Lipoproteins: lipid+protein 3. Glycoproteins: carb.+protein 1. DNA 2. RNA 3. ATP Monomers Polar/Nonpolar --------------------------------------------------------------END-----------------------------------------------------------------Homework Chapter 4 1. Make a table to compare and contrast prokaryotic and eukaryotic cells for at least 4 characteristics. (1 pt) 2.On white paper, sketch, color, & label ALL the structures of an animal cell and a plant cell (p. 59). No black & white. Specifically, color mitochondria red, chloroplasts green, RER purple, & SER yellow (6 pts). Page 3 of 3