Biology 101 Fall, 2008 Week 1 – Introduction Seed Magic, Cells, Tissues, Leaves Mitosis, Meiosis Meet the TA’s for fall 2008 Beth Thomas Chandra Emani Xiangyu Shi Angelie Misra Lab Coordinator Tonna Harris Haller Computer Charlie Harris Office S BIOLOGY 101 ! GENERAL INFORMATION ! Fall 2007 TEXTBOOK- Stern, Introductory Plant Biology, (9th Ed) 2002; Website: http://www.idmb.tamu.edu/biology101/ Harris-Haller, Biology 101 Lab Manual, 1st ed. 2008, Hayden-McNeil Publishing Co. Primary local sources for the Textbook are Loupot’s (Northgate) and Traditions bookstores. If you purchase on line be sure to get the 9th edn - ISBN 0072909412 LECTURE- MWF 9:10 to 10:00 a.m. in Biol. Sciences Bldg. East (BSBE) Room 115. Lecture notes will be posted at: http://www.idmb.tamu.edu/biology101/ Approximately 25 POPQUIZZES, each typically worth 1 to3 points, will be held in class without prior notice! As they are totally BONUS points, the instructor has NO obligation to provide any prior announcement of these quizzes, and there here will be NO opportunities to make-up these quizzes. Attendance for the lectures IS NOT mandatory but absence means that the opportunity for extra credits from POPQUIZZES will be lost. LABORATORY- All lab sections meet in Heldenfels 305. Unlike lectures, attendance at the laboratories IS mandatory. There are no makeup labs. If you miss lab, you must notify your instructor within two class days and provide documentation of a university authorized absence within one week to be considered for a makeup assignment. See Lab Manual Appendix B for a 20 point bonus opportunity in lab: EXAMS - DO NOT FORGET YOUR STUDENT ID! Exams I, II and III will be from 9:10 to 10:00 a.m. in BSBE 115, except for students with disabilities. You may NOT take any back-pack, notes or headgear (e..g. caps) to your desk - leave them at the side or front of the room. Exam I, Monday Sept 24; Exam II Friday Oct 19; Exam III; Monday Nov12. NOTE: Exam IV will be from 8:00 to 10:00 (2 hr) on Monday, December 10. EXAM REVIEW SESSIONS - 7:30 to 9:00 p.m.: Thursday Sept 20; Tuesday Oct 16; Thursday Nov 8 (all in BSBE 115). The review for the Final Exam (December 3) will be in normal class time and place. MISSED EXAM If you know you will miss an exam for a university approved reason, please contact Dr. Hall as soon as possible and in any case no less than 2 working days prior to the exam. If you miss an exam, you must show written evidence within 1 week to substantiate the absence was for an accepted reason (section 7, Attendance, revised 2006 http://student-rules.tamu.edu/). The Lower Division Biology Program DOES NOT accept the Texas A&M University Explanatory Statement of Absence Form as an excused absence. MAKE-UP EXAMS will NOT be rescheduled without instructor permission and proof of an authorized absence. It is your responsibility to notify Dr. Hall of your absence, provide verification, and insure your name is on the sign-up list for the appropriate make-up exam. Make-up exams will only be offered on the following dates: (1) Thurs. Oct. 11; (2) Thurs. Nov. 1; (3) Thurs. Nov. 29. Make-up exams may consist of essay and short answer questions. All make up exams will be held at 7:00-8:00 p.m in Heldenfels 100. DETERMINE YOUR GRADE AS FOLLOWS: Note: Of the total possible points (600), 170 will be earned in the Laboratory. LECTURE 3 lecture examinations, 100 points each 1 final examination (comprehensive) Sub Total 300 130 430 LAB Lab Quizzes/writeups, 12 at 10 points each Two laboratory reports at 15 points each Lab participation points Sub Total 120 30 20 170 To determine your grade: Add points scored for Exams I through IV; add total lab points. To this total add the total PopQuiz bonus points. Divide this total by 6 to get a % score. Normally, 90-100% = A; 80-89% = B; 70-79% = C and 60-69% = D. COMPUTER ACCESS INFORMATION- Please note that grade checks and exam challenges can only be made by computer application. Once you obtain a student ID with a universal identification number (UIN), then logon to http://gateway.tamu.edu/ to activate your Neo NetID. Grade information will be posted online on Vista/Blackboard. Use your NeoID to login at http://elearning.tamu.edu to access your grades. GRADE CHECKS & EXAM CHALLENGES - Requests for grade checks must be submitted via the Lower Division Biology Homepage at: http://www.bio.tamu.edu/ldi. You will be notified by email when a grade check is ready for pickup. Come to 315 Heldenfels and show your I.D. to pickup a grade check. Exam challenges are submitted via an Exam Challenge Form at: http://www.bio.tamu.edu/ldi. All exam challenge forms will be forwarded to Dr. Hall for review. ACADEMIC INTEGRITY: – “An Aggie does not lie, cheat or steal or tolerate those who do”. The Honors Council provides a means to report and appeal allegations of academic dishonesty. Please see the Rules and Procedures at http://www.tamu.edu/aggiehonor. Misconduct in research or scholarship includes fabrication, falsification, or plagiarism in proposing, performing, reviewing or reporting research. It does not include honest error or honest differences in interpretations or judgements of data. Texas A&M University students are responsible for authenticating all work submitted to an instructor. If asked, students must be able to produce proof that the item submitted is indeed the work of the student. Students must keep appropriate records at all times. The 1 BIOLOGY 101 ! LECTURE AND LAB SCHEDULE ! Fall 2007 BIOL 101 (3-3): MWF 9:10-10 a.m., BSBE 115 LAB: Heldenfels 305 INSTRUCTOR: Dr. Tim Hall tim@idmb.tamu.edu OFFICE HOURS: W 10:15 am; F 2:00 pm OFFICE LOCATION: BSBW 407 OFFICE PHONE: 845-7728 BOOKS & RESOURCES: TEXT: Stern, Introductory Plant Biology 9th ed; Website: http://www.idmb.tamu.edu/biology101/; LAB: Harris-Haller, Biology 101 Lab Manual, 1st ed. 2008, Hayden-McNeil Publishing Lecture Schedule and Subject ì Aug Sep Ù Ú Û Text Chapters (Pages) 27 M Introduction 29 W Seeds - Morphology, germination 31 F Seedlings -roots, stems, leaves, (Tissues) 3 M Roots and Soils 5 W Stems, Secondary growth 7 F Leaves 10 M Flowering plants; Flowers 12 W Fruits and Seeds 14 F Classification Systems; Evol. concepts 17 M Cell Cycle, Mitosis, Meiosis 19 W Biomolecules (DNA & RNA) Replication 20 R Exam Review - 7:30 to 9:00 p.m. 21 F Growth & Dev. Hormones, Tropisms Ü 24 M ** EXAM I ** (to Replication) 26 W Plant Metabolism: Carbohydrates, Lipids 28 F Membranes and membrane transport Oct 1 M Photosynthesis - Light & dark (C3, C4) 3 W Respiration aerobic & anaerobic 5 F Genetics Ý Þ ß à á Nov ìì ìí Lab Manual Exercis Week 1 notes on Website; 1 (1-11) 1. Investigating Botany; 8 (147-153); 3 (28-50) 2. Cells 4 (53-64) Seed germination setup 5 (65-85) 6 (86-108) 7 (109-129) 3. Flowering Plant Developm Turn in notes on germinati 23 (441-460) 8 (130-147) 15 (273-285); 16 (286-298) 4. Flowering Plant Anatomy Turn in notes on seedling d 12 (221-229) 11 (197-220) 5. Cell Division extra credit: appendix B. Field Botany/Campus Tou 10 (170-182) 6. Enzymes 2 (12-23); Website Website; 9 (154-159) 10 (170-182; 182-186) 10 (186-196) 13 (231; 240-252) 7. Photosynthesis 8 M Gene structure, Transcription 10 W Amino acids, Protein synthesis (translation) 12 F Gene Cloning/synthesis and detection - PCR Website; 13 (232-237) 8. Respiration 15 M Plant Tissue Culture 16 T Exam Review - 7:30 to 9:00 p.m. 17 W Plant transformation, regeneration 19 F **EXAM II ** (to Photosynthesis) Protista-Algae Website; 14 (253-272) 22 M Transgenic Plants: Analysis 24 W Feeding the world - 2005 26 F Feeding the world - 2050 29 M Plant pathogens and ways to stop them 31 W Algae 2 F Bryophytes 5 M Seedless Vascular Plants 7 W Seed Plants: Gymnosperms 8 R Exam Review - 7:30 to 9:00 p.m. 9 F Plant nutrition 12 M **EXAM III ** (Biotech/Alga-Gymnos) 14 W Nutrient cycles 16 F Ecology 9. Genetics Website 24 (461-486) Website 10. Transgenic Plants week 1 Website; 13 (237-241) Website Website 10. Transgenic Plants week 2 GFP Demo 11. Protein Synthesis 20 (381-395) 21 (410-420; 405-410) 12. Plant Pathogens Website 13. Non-seed bearing plants 25 (487-507) 25 (508-518) BIOL 101 LABS WILL BE HELD THIS WEEK e.g. TODAY! 2 Several cultivars of common bean, Phaseolus vulgaris. A “cultivar” or “cultivated variety” is not the same thing as a species, but further changes could make it a species. Some seeds are boring Some seeds are interesting! Seed Magic. How does a seed know when to germinate? How do some parts grow up and some down? Mung 2 days Soy 3 Mung 3 days Mung 6 days Mung Soy Soy Soya 4 SEED GERMINATION primary growth from apical meristems of root (radicle) and shoot energy for growth from: endosperm cotyledons (storage proteins) Bean seed structure, germination and seedling Corn seed structure, germination and seedling 5 Mung seedling leaves at 6 days EMBRYO AND SEEDLING cotyledonary node epicotyl hypocotyl radicle 6 PLANT CELLS 1665 Robert Hooke - First to describe the concept of cells. He actually studied cork, which only has dead cells. 1809 Jean Baptiste de Lamarck - Recognized that animals and plants consisted of cells, often grouped into tissues. 1831 Robert Brown - Discovered the nucleus. Soon after, Matthaias Schleiden discovered the nucleolus and, together with Theodore Schwann, recognized the significance of cells and are credited with developing (1838-39) the cell theory. Robert Hooke 1635-1703 Lamarck 1744-1829 7 MEASUREMENT METER (m) Basic unit of scientific measurement CENTIMETER (cm) 0.01, 10-2 or 1/100th of a meter MILLIMETER (mm) 0.001, 10-3 or 1/1000th of a meter MICROMETER (μm) 10-6, one millionth of a meter NANOMETER (nm) 10-9, one thousand millionth of a meter MEASUREMENT MICROMETER (μm, micron) 10-6, one millionth, of a meter A frequently used dimension in biology Plant cell average size is 10 to 100 μm Plant cell nuclei average 10 μm Bacteria average 2 to 3 μm Viruses are about 0.01 μm Microtubule diameter is 0.02 μm PLANT CELLS 8 The Plant Cell Tonoplast Vacuole Nuclear Envelope Microtubules Chromatin Mitochondrion Nucleolus Ribosomes Rough ER Actin Filaments Smooth ER Chloroplast Peroxisome Plasmodesmata Cell Wall Plasma Membrane Golgi Apparatus Nucleus: contains chromosomes - DNA (deoxyribonucleic acid) and proteins Nucleolus Nucleoplasm Inner Membrane Nuclear Pores Nuclear Pore Outer Membrane Nuclear Envelope DNA is typically wrapped round histone proteins as chromatin.. Genes (DNA) are organized into chromosomes. Chromosomal structure is important in cell division and in controlling gene expression. Nuclear products such as messenger RNA (mRNA) are exported to the cytoplasm via the nuclear pores. Regulatory proteins and other materials produced in the cytoplasm are imported via nuclear pores. Nuclear structure Ribosomes, essential for protein synthesis, are produced in the nucleolus. 9 Cytoplasm entire contents of cell, except nucleus cytosol cytoskeleton – network of filaments Cytoskeleton Filaments Microtubules: hollow tubules, α- and β- tubulin, bound as dimers MICROTUBULE 25 nm α- and β- tubulin Cytoskeleton Filaments Actin filaments: two intertwined actin strands ACTIN FILAMENT 7 nm Actin molecules 10 Cytoskeleton Filaments Intermediate filaments: various fibrous proteins INTERMEDIATE FILAMENT 10 nm Cytoskeleton MICROTUBULE ACTIN FILAMENT Cell Wall middle lamella - holds cells together; mostly pectins primary cell wall - thin, flexible; hemicellulose, pectin and glycoproteins <25% cellulose secondary cell wall - rigid, provides structure; 40 to 80% cellulose, up to 25% lignin 11 Cell Wall Primary Cell Wall Layers of Secondary Cell Wall Middle Lamella Plasmodesmata From: Lucas et al. (2001) Nature Reviews Mol. Cell Biol. 2: 849-857 12 Plasma Membrane surrounds cytoplasm typically in contact with cell wall differentially permeable plasmodesmata desmotubule Plasma Membrane made of phospholipids and proteins Endoplasmic Reticulum (ER) Rough ER has ribosomes attached ribosomes are composed of RNA and protein synthesized in the nucleolus are the machinery for protein synthesis Smooth ER does not have ribosomes attached 13 Endoplasmic Reticulum (ER) Golgi Bodies (Dictyosomes) stacks of vesicles receive material from ER processed material exported to plasma membrane and cell wall (exocytosis) Chloroplast Outer Membrane Thylakoid Inner Granum Stroma Membrane Membrane 14 Chloroplasts green organelles surrounded by two membranes photosynthesis - light energy harvested and converted into chemical energy (sugars) by fixation of atmospheric CO2 Mitochondria two membranes; inner folded to form cristae Cristae Inner Membrane respiration – chemical energy (e.g. sugars) is converted into ATP (adenosine triphosphate) and the ATP used for cellular work; CO2 released Outer Membrane Vacuoles surrounded by single membrane, the tonoplast plant turgidity reservoir for cellular metabolites 15 MICROBODIES small organelles (0.5 - 1.5 μm diameter) single membrane Peroxisomes mainly in leaves metabolize H2O2 (hydrogen peroxide) via catalase contain oxidases that produce H2O2 Glyoxysomes - convert lipids to carbohydrates (rare in animals) The Plant Cell Tonoplast Vacuole Nuclear Envelope Microtubules Chromatin Mitochondrion Nucleolus Ribosomes Rough ER Actin Filaments Smooth ER Chloroplast Peroxisome Plasmodesmata Cell Wall Plasma Membrane Golgi Apparatus Plant Tissues A useful link is: University of Arkansas at Little Rock http://www.ualr.edu/botany/ 16 Fundamental Types of Plant Cells • Parenchyma – thin, primary cell walls; undifferentiated, living Parenchyma chlorenchyma photosynthesis aerenchyma gas exchange transfer cells short-distance solute transport storage parenchyma Fundamental Types of Plant Cells Collenchyma – unevenly thickened, stretchable, primary cell walls; living 17 Fundamental Types of Plant Cells • Sclerenchyma – thick, non-stretchable secondary cell walls; dead Sclerenchyma Sclereids : short, variously shaped in all parts of the plant Fibers: long, slender cells often associated with vascular bundles 18 Primary Types of Plant Tissues MERISTEMS Apical Axillary buds Intercalary DERMAL TISSUES Epidermis GROUND TISSUES Parenchyma Collenchyma Sclerenchyma VASCULAR TISSUES Xylem Phloem LEAVES EXTERNAL STRUCTURE Simple leaves flat, undivided blade midvein Compound leaves blades divided into leaflets Both types supported by a petiole (leaves with no petiole are sessile) and sometimes subtended by bracts 19 Components of a typical leaf cuticle upper epidermal cell palisade mesophyll air space spongy mesophyll bundle sheath cell vascular bundle lower epidermis stoma guard cell cuticle petiole blade LEAF STRUCTURE Epidermis usually not photosynthetic – except for guard cells stomata usually more on abaxial than adaxial surface 20 LEAVES: primary site of photosynthesis in most plants Leaf design: sunlight CO2 water sugars (photosynthate) INTERNAL STRUCTURE Vascular tissues veins surrounded by bundle sheath INTERNAL STRUCTURE Horizontal leaves chlorenchyma cells palisade mesophyll aerenchyma cells spongy mesophyll Vertical leaves uniform mesophyll 21 LEAF ABSCISSION Deciduous plants shed leaves in fall fall colors Evergreen plants leaves live 3-5 years shed year-round stem LEAF ABSCISSION : shedding of leaves hormone controlled short day length drought abscission zone petiole base little sclerenchyma suberization (suberin) suberized leaf scar 22 Palmately compound (Buckeye) Pinnately compound (Black walnut) Alternate (Tulip tree) Opposite (Dogwood) Palmately veined (Maple) Globe-shaped (String-of pearls) Pinnately veined (Oak) Parallel-veined (Grass) Whorled (Bedstraw) Linear (Yew) Fan-shaped (Ginkgo) MODIFIED LEAVES LEAF TENDRILS e.g. garden peas STIPULES protect buds (oak) may become tendrils (Smilax) or spines (Euphorbia) MODIFIED LEAVES BUD SCALES WINDOW LEAVES e.g. Fenestraria 23 MODIFIED LEAVES Flower pot leaves e.g. Dischidia An epiphyte. Some leaves develop into pouches. Ants carry soil into the pouches and moisture makes a good growing medium. developing roots MODIFIED LEAVES sundew (Drosera) droplets of digestive enzymes trap insects pitcher plant (Sarracenia) nectar glands attract insects, they fall into pitcher bladderwort (Utrichularia) insects are sucked into bladders; trapdoor closes in 1/100 sec Copyright © McGraw-Hill Companies MODIFIED LEAVES INSECT TRAPPING LEAVES e.g. Venus flytrap, Dionaea STORAGE e.g. onion, Allium 24 MODIFIED LEAVES COTYLEDONS REPRODUCTIVE asexual e.g., Kalanchoë MODIFIED LEAVES SPINES e.g. cacti BRACTS at base of flower or peduncle e.g., bougainvillea Spines Barbary (Berberis) spines are modified leaves 25 Thorns Thorns are modified stems produced in leaf axils Prickles Rose (Rosa) prickles are outgrowths of the stem epidermis or cortex LEAF DEFENSE SYSTEMS Poisons e.g. epidermal hairs with toxins 26 LEAF DEFENSE SYSTEMS Protease inhibitors in tomato – insect damage to leaves induces their production Hormones Bugleweed (Ajuga remota) produces ecdysone-like compounds that cause insects to develop multiple head capsules ECONOMIC IMPORTANCE OF LEAVES Food, spices, drinks ECONOMIC IMPORTANCE OF LEAVES Dyes e.g. henna, indigo Fibers Drugs 27 ECONOMIC IMPORTANCE OF LEAVES Drugs ECONOMIC IMPORTANCE OF LEAVES Waxes, soaps Fuel coal EXTERNAL SECRETORY STRUCTURES Nectaries Hydathodes guttation 28 EXTERNAL SECRETORY STRUCTURES Digestive glands trichomes Salt glands INTERNAL SECRETORY STRUCTURES Secretory cells chemical deterrents sources of oils peanut cotyledons safflower seeds palm fruits secondary phloem (bark) of Cinnamomum sp. INTERNAL SECRETORY STRUCTURES Ducts pine resin deters grazing animals seals wounds Laticifers latex 29 MODIFIED LEAVES sundew (Drosera) droplets of digestive enzymes trap insects pitcher plant (Sarracenia) nectar glands attract insects, they fall into pitcher bladderwort (Utrichularia) insects are sucked into bladders; trapdoor closes in 1/100 sec Copyright © McGraw-Hill Companies Video gallery - cyclosis in Canadian pondweed by Dave Walker, UK Elodea 30 The Cell Cycle Mitosis and Meiosis The Cell Cycle Cell Growth Interphase G1 S G2 Cell Division Mitosis Cytokinesis Telomere 31 http://highered.mcgraw-hill.com/sites/0073031216/student_view0/exercise13/mitosis_movie.html INTERPHASE period between cell divisions most metabolic activities are conducted in this phase 90% of all cells are in this phase chromosomes elongated as diffuse (eu)chromatin INTERPHASE G1 phase cellular growth and biosynthesis proteins and enzymes produced organelles multiply nucleotides made cytoskeletal microtubules reassemble 32 INTERPHASE S phase DNA is synthesized (replicated) G2 phase cell prepares for mitosis microtubule synthesis proteins made for processing chromosomes and lysis of the nuclear envelope MITOSIS The nucleus divides to give two daughter nuclei genetically identical to the parental nucleus The original ploidy (haploid - n or diploid - 2n) of the parental nucleus is maintained MITOSIS Prophase Chromatin condenses. Chromosomes become visible and easily stainable – two chromatids can be discerned. Nuclear envelope dissolves. Nucleolus gradually disintegrates. 33 MITOSIS Metaphase The spindle apparatus, composed of microtubules, forms Additional microtubules attach to kinetochores on either side of centromere to complete the spindle apparatus Chromosomes align with their centromeres on a single equatorial plane: the metaphase plate MITOSIS Anaphase Centromeres split Chromatids become chromosomes as they are pulled (and/or pushed) apart MITOSIS Telophase The nuclear envelopes surround new chromosomes, forming daughter nuclei The chromosomes decondense into diffuse euchromatin 34 Cytokinesis - Division of the Cytoplasm Phragmoplast system of microtubules on the plane of the former preprophase band and cell equator Cytokinesis dictyosome vesicles cell-wall ......precursors Vesicles trapped by the phragmoplast cell plate becomes the new cell wall Cell Plate Daughter Cells desmotubules (ER) penetrate plate; form plasmodesmata MITOSIS Mitotic Stages in the Endosperm of Haemanthus katherinae, Photographed with an Interference Contrast Microscope A. BAJER, Eugene/Oregon b-online@botanik.uni-hamburg.de 35 MEIOSIS 2 nuclear divisions Meiosis I (1 → 2 cells) Meiosis II (2 → 4 cells) four haploid (1n) nuclei from one diploid (2n) nucleus genetic information is reassorted, yielding genetic variation in daughter nuclei Meiosis I : Reduction Division (2n → n ) PROPHASE I chromosomes condense homologous chromosomes pair (synapsis) DNA is exchanged between non-sister chromatids at chiasmata Meiotic Stages in Anthers of Ramsons (Allium ursinum; 2n = 14) Staining with acetic acid carmine, phase contrast microscopy photography by W. KASPRIK © Peter v. Sengbusch - b-online@botanik.uni-hamburg.de Meiosis I : Reduction Division (2n → n ) PROPHASE I crossing-over and gene exchange occur No Chiasmata Synapsis - synaptonemal complex; bivalents chiasmata form exchange of genetic information Chiasmata 36 Meiosis I METAPHASE I homologous chromosome alignment centromeres lie on either side of the cell equator microtubules attach to one side of each centromere in bivalent Meiosis I ANAPHASE I Chromosome separation (2n → n) 37 Meiosis I TELOPHASE I may be omitted in meiosis cytokinesis may occur Meiosis II: Gamete or Spore Formation PROPHASE II chromosome condensation omitted, if Telophase I was omitted Meiosis II: Gamete or Spore Formation METAPHASE II chromosomal alignment Cell equator– usually oriented 90o to first division 38 Meiosis II ANAPHASE II centromeres split chromatids separate, becoming chromosomes Meiosis II TELOPHASE II nuclear envelopes reform chromosomes decondense Comparison of mitosis and meiosis 39 Fig. 12.2f2 MEIOSIS Produces four haploid (gametophyte) nuclei from one diploid (sporophyte) nucleus The number of chromosomes is halved (2n Fertilization will restore the diploid state. n). During the process, genetic information is reassorted Depending upon chromosomal arrangement during metaphase I, two of the daughter nuclei can have the majority of their genetic information from the female grandparent 40