Honors Biology 1A Lab: Identification of Organic Polymers, Dimers and Monomers Introduction: As with the relevant ions that determine pH, the constituent chemical units that give organic polymers (i.e carbohydrates, proteins, lipids, etc.) their unique physical and chemical properties cannot be assessed visually. However, some substances have intensive chemical properties that allow them to undergo observable qualitative changes when they react with the functional groups or linkages of the organic compounds. This class of specific reactive substances is known as organic indicators. As with acid/base indicators like phenolthalien (PTH) and Brom-Thymol Blue (BTB), organic indicators are highly specific for the unique functional groups/linkages of proteins v. carbohydrates v. lipids. Therefore, they may be used to identify the general class to which an unknown organic compound belongs. MATERIALS PER LAB STATION: Bunsen burner Four test tubes test tube holder eyedropper 10 ml graduated cylinder 400 ml beaker Benedict's solution Lugol's solution Biuret's solution gelatin 1% glucose solution 1% starch solution test tube rack test tube brushes GENERAL STOCKING PROCEDURE: 1. Into four test tubes, place 3 ml of appropriate solutions, as indicated in the VISUAL SUMMARY below. Place 1% glucose in the first, 1% starch in the second, 1% gelatin (protein) in the third, and distilled water in the last test tube. Place all of the test tubes in a rack. PART 1: BENEDICT’S TEST 2. Select the Benedict's bottle and record the color of this solution in the Data Table 1 under Initial Color. 3. Place five drops of Benedict's solution in each of the four test tubes. Gently agitate all of the tubes. Place the four test tubes in a boiling water bath together. After two minutes have elapsed, observe the colors of each test tube and record those colors in Data Table 1 under Final Color. 4. Remove the test tubes from the water bath. Clean thoroughly and dry them for use in the next step. 5. Once again, set up the four test tubes as indicated in the VISUAL SUMMARY. PART 2: LUGOL’S TEST 6. Select the Lugol's bottle, put a drop in a spot plate, and record the color of the Lugol’s solution in Data Table 2 under Initial Color. 7. Place five drops of Lugol's solution into each of the four test tubes. Gently agitate all of the tubes. Record the colors of the solutions after the addition of Lugol's solution and record the colors in Data Table 2 under Final Color. NOTE: YOU DO NOT NEED TO HEAT THE LUGOL’S TEST 8. Clean thoroughly and dry the test tubes. Once again, set up the four test tubes as indicated in the VISUAL SUMMARY. PART 3: BIURET TEST 9. Select the Biuret's bottle and record the color of the solution in Data Table 3 under Initial Color. 10. Place five drops of Biuret's solution into each of the four test tubes. Gently agitate the tubes. Record the colors of the solutions after the addition of Biuret's solution and record the colors in Data Table 3 under Final Color. NOTE: YOU DO NOT NEED TO HEAT THE BIURET TEST . However, you may need to hold the test tubes against a white background to assess changes. PART 4: SUDAN IV TEST 9. Select the Sudan IV bottle and record the color of the solution in Data Table 3 under Initial Color. 10. Place five drops of Sudan IV solution into each of the four test tubes. Gently agitate the tubes. Record the colors of the solutions after the addition of Sudan IV solution and record the colors in Data Table 34 under Final Color. NOTE: YOU DO NOT NEED TO HEAT THE SUDAN IV TEST . However, you may need to hold the test tubes against a white background to assess changes. PART 5: IDENTIFICATION OF UNKNOWNS There are three unknowns that your group will be asked to assess. Your task is to identify which organic compounds are present in each of the three unknown mixtures by using a logical sequence of test employing the use of the organic indicators 11. Obtain an unknown solution from your instructor. Into each of the four clean test tubes, place 3 ml of the unknown solution. 12. In the Initial Color column of Data Table 4, record the initial colors of all the "indicators" you will be using (e.g. Benedict's, etc.) 13. Add five drops of Benedict's solution to the first, five drops of Lugol's solution to the second, five drops of Biuret's solution to the third, and five drops of Sudan IV to the fourth test tube. Gently agitate all of the tubes. 14. Place the first test tube (with unknown and Benedict's solution) into the boiling water bath for two minutes. Observe the contents of the tube, and record the results in Data Table 4. 15. Observe the reactions that may have occurred in the three other test tubes (water control, Benedict’s and Biuret reagents) and record those color results as well. 16. Clean and dry all of the test tubes thoroughly. Repeat steps 11 through 15 for unknowns B and C. Clean and return all materials to their proper places. DATA TABLES: Record the initial and final colors of each of the tested indicators in a proper data table in your lab notebook. TABLE 1 Benedict's Solution Test Tube Content 1 Initial Indicator Color Final Color TABLE 2 Lugol's Solution Test Tube Content glucose 1 glucose 2 starch 2 starch 3 protein 3 protein 4 water 4 water TABLE 3 Biuret Solutions Test Tube Content Initial Indicator Color Final Color Initial Indicator Color Final Color Table 4 Sudan IV Test Tube Content Initial Final Color Indicator Color 1 glucose 1 glucose 2 starch 2 starch 3 protein 3 protein 4 water 4 water TABLE 5 Identification of Unknowns Unknown Code Contains starch Contains Glucose Contains Proteins Contains Lipids ANALYSIS QUESTIONS: Answer the following questions in complete sentences in your lab notebook. 1. Why would water serve as a control group in this experiment? 2. Which reagent - Benedict's, Lugol's, Biuret's or Sudan IV- is used to test for the presence of monosaccharides? What qualitative change indicates a positive test for these monomers? 3. Which reagent - Benedict's, Lugol's, Biuret's or Sudan IV - is used to test for the presence of the polysaccharide starch? What qualitative change indicates a positive? 4. Which reagent - Benedict's, Lugol's, Biuret's or Sudan IV - is used to test for the presence of protein? What qualitative change indicates a positive test for protein? 5. Which reagent - Benedict's, Lugol's, Biuret's or Sudan IV - is used to test for the presence of lipids? What qualitative change indicates a positive test for protein? 5. Lugol’s solution will not indicate for the polysaccharides cellulose or glycogen. Explain why Lugol’s will not indicate for these polymers but will respond to another carbohydrate polymer from your experiment. Be explicit re: the difference in terms of functional groups or linkages. 6. Which indicator would you use to assess the following reactions? Explain why you would use each of the organic indicators you chose: 6a) Hydrolysis of a polypeptide into amino acids 6b) Synthesis of a polysaccharide from monosaccharide monomers 6c) Hydrolysis of table sugar into monosaccharides 6d) Synthesis of a lipid from fatty acids and glycerol 7. Why would leaving the %1 starch + benedict’s solution in the hot water for 3+ minutes ultimately produce the same results as the %1 glucose + Benedict’s test 8. By comparison, if a protein solution were heated up it would shift from positive to negative. Based on this information, to what must the indicator for protein be sensitive? 9. An unknown compound is determined to be a polymer containing carbon. Why are the tests we used in this lab essentially “incomplete” as a means for testing the true identify of this unknown organic compound? 10. Are the changes you observed in this lab more indicative of intensive or extensive properties? Explain your answers.